Wall clock time and date at job start Mon Mar 30 2020 02:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 119.99924 * 2 1 4 4 H 1.48501 * 109.47354 * 270.00513 * 3 2 1 5 5 H 1.48502 * 109.46796 * 30.00293 * 3 2 1 6 6 H 1.48493 * 109.47035 * 150.00182 * 3 2 1 7 7 C 1.37870 * 120.00368 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00672 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99935 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.46908 * 59.99530 * 9 7 2 11 11 C 1.53031 * 109.48004 * 299.98677 * 9 7 2 12 12 C 1.52123 * 108.72745 * 188.77277 * 11 9 7 13 13 N 1.32520 * 124.20164 * 197.58121 * 12 11 9 14 14 C 1.28669 * 117.87952 * 179.97438 * 13 12 11 15 15 S 1.70912 * 110.14069 * 359.76131 * 14 13 12 16 16 C 1.34621 * 122.63957 * 17.54189 * 12 11 9 17 17 C 1.50996 * 125.22603 * 0.04311 * 16 12 11 18 18 H 1.09002 * 109.61671 * 135.96507 * 17 16 12 19 19 O 1.42896 * 109.61646 * 256.32019 * 17 16 12 20 20 C 1.53147 * 109.47496 * 180.02562 * 9 7 2 21 21 H 0.97008 * 120.00252 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.58902 * 308.54228 * 11 9 7 23 23 H 1.08999 * 109.59364 * 68.84105 * 11 9 7 24 24 H 1.07999 * 124.92937 * 179.97438 * 14 13 12 25 25 H 0.96696 * 114.00183 * 300.00033 * 19 17 16 26 26 H 1.08992 * 109.54538 * 70.52779 * 20 9 7 27 27 H 1.09002 * 109.54698 * 310.23180 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6240 -2.5566 -0.8902 11 6 0.3719 -2.5809 1.2494 12 6 -0.2095 -3.9832 1.3467 13 7 -1.2547 -4.3060 2.0948 14 6 -1.6455 -5.5319 2.0856 15 16 -0.6545 -6.4578 1.0455 16 6 0.2990 -5.0288 0.6680 17 6 1.4868 -4.9687 -0.2622 18 1 2.1416 -5.8198 -0.0752 19 8 1.0364 -4.9989 -1.6180 20 6 2.2463 -3.6632 -0.0005 21 1 -0.4851 0.8401 0.0004 22 1 0.9740 -2.3726 2.1339 23 1 -0.4353 -1.8521 1.1768 24 1 -2.4808 -5.9189 2.6503 25 1 0.5351 -5.7931 -1.8484 26 1 2.7435 -3.7179 0.9678 27 1 2.9875 -3.5093 -0.7847 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075596764.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:48 Heat of formation + Delta-G solvation = -38.073753 kcal Electronic energy + Delta-G solvation = -13512.386373 eV Core-core repulsion = 11167.564325 eV Total energy + Delta-G solvation = -2344.822048 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.09835 -38.49673 -36.38895 -33.94416 -30.76263 -30.31103 -27.04578 -25.52484 -23.81176 -21.93729 -19.75001 -19.20025 -18.27516 -17.65684 -16.62940 -16.14183 -15.68236 -15.36890 -15.07525 -14.63580 -14.31267 -13.87118 -13.34468 -12.92947 -12.86477 -12.52512 -12.29366 -12.01497 -11.64163 -11.61891 -10.99634 -10.84019 -10.51537 -10.39759 -10.22084 -9.53327 -8.09728 -6.24722 -0.20605 0.47594 0.77090 1.43080 1.43324 1.54129 1.87227 2.43948 3.14901 3.38071 3.48206 3.84906 4.01458 4.29308 4.35803 4.68172 4.80507 4.86958 5.00350 5.12299 5.24908 5.43401 5.60764 5.93361 6.01915 6.31830 6.82178 6.84773 6.92994 7.44466 8.95846 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.043294 B = 0.008777 C = 0.007738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.587886 B = 3189.258130 C = 3617.707242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.011 3.989 3 Si 0.959 3.041 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.263 1.263 7 C -0.535 4.535 8 H 0.061 0.939 9 C 0.056 3.944 10 H -0.004 1.004 11 C -0.026 4.026 12 C 0.069 3.931 13 N -0.517 5.517 14 C 0.024 3.976 15 S 0.168 5.832 16 C -0.284 4.284 17 C 0.192 3.808 18 H 0.095 0.905 19 O -0.565 6.565 20 C -0.099 4.099 21 H 0.260 0.740 22 H 0.049 0.951 23 H 0.067 0.933 24 H 0.236 0.764 25 H 0.386 0.614 26 H 0.075 0.925 27 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.243 -14.396 2.119 14.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.188 4.188 3 Si 0.784 3.216 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.573 4.573 8 H 0.080 0.920 9 C 0.037 3.963 10 H 0.015 0.985 11 C -0.066 4.066 12 C -0.061 4.061 13 N -0.231 5.231 14 C -0.274 4.274 15 S 0.422 5.578 16 C -0.404 4.404 17 C 0.130 3.870 18 H 0.113 0.887 19 O -0.372 6.372 20 C -0.138 4.138 21 H 0.069 0.931 22 H 0.067 0.933 23 H 0.086 0.914 24 H 0.252 0.748 25 H 0.234 0.766 26 H 0.093 0.907 27 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.413 -14.419 2.169 14.587 hybrid contribution -0.044 1.589 0.101 1.593 sum -0.458 -12.830 2.270 13.037 Atomic orbital electron populations 1.70061 1.07475 1.27239 1.51195 1.25836 0.95622 1.02772 0.94578 0.85546 0.78809 0.79042 0.78214 1.20190 1.21106 1.18737 1.21568 0.93331 0.91625 1.50778 0.92033 1.18514 0.92713 0.92934 0.92139 0.98550 1.20420 0.99126 0.88028 0.99021 1.21595 0.91854 0.98373 0.94328 1.65941 1.14634 1.19561 1.22970 1.28903 1.04940 0.91050 1.02521 1.83027 1.23323 1.10742 1.40665 1.27032 1.07554 0.96605 1.09252 1.20304 0.88823 0.99244 0.78587 0.88719 1.86669 1.75792 1.47790 1.26982 1.21700 0.97958 0.92764 1.01372 0.93056 0.93302 0.91423 0.74841 0.76561 0.90653 0.91390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.49 11.44 21.44 0.25 -55.25 15 2 C 0.01 0.60 5.30 84.65 0.45 1.05 15 3 Si 0.96 44.45 29.54 68.60 2.03 46.48 15 4 H -0.28 -12.52 7.11 99.48 0.71 -11.82 15 5 H -0.29 -13.06 7.11 99.48 0.71 -12.35 15 6 H -0.26 -11.64 7.11 99.48 0.71 -10.93 15 7 C -0.54 -30.10 8.53 25.60 0.22 -29.88 15 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 15 9 C 0.06 2.93 2.03 -11.48 -0.02 2.91 15 10 H 0.00 -0.22 7.76 -2.39 -0.02 -0.24 15 11 C -0.03 -1.32 5.21 30.32 0.16 -1.17 15 12 C 0.07 3.00 6.78 42.08 0.29 3.28 15 13 N -0.52 -20.55 10.51 -189.23 -1.99 -22.54 15 14 C 0.02 0.66 12.22 130.71 1.60 2.26 15 15 S 0.17 4.09 23.21 -56.49 -1.31 2.78 15 16 C -0.28 -10.11 6.00 24.95 0.15 -9.96 15 17 C 0.19 6.57 3.90 30.04 0.12 6.69 15 18 H 0.10 2.52 8.14 -2.39 -0.02 2.50 15 19 O -0.57 -19.63 12.93 -148.98 -1.93 -21.55 15 20 C -0.10 -4.14 4.88 30.74 0.15 -3.99 15 21 H 0.26 14.95 8.31 -92.70 -0.77 14.18 15 22 H 0.05 2.53 8.12 -2.39 -0.02 2.51 15 23 H 0.07 4.00 6.37 -2.39 -0.02 3.99 15 24 H 0.24 4.17 8.06 -2.91 -0.02 4.14 15 25 H 0.39 9.30 9.08 -74.06 -0.67 8.63 15 26 H 0.07 2.95 8.11 -2.39 -0.02 2.93 15 27 H 0.07 2.81 8.11 -2.39 -0.02 2.79 15 Total: -1.00 -69.93 243.60 0.67 -69.26 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: 0.52 Total: 9.64 kcal Atomic # 6 Polarization: -31.92 SS G_CDS: 3.10 Total: -28.82 kcal Atomic # 7 Polarization: -76.05 SS G_CDS: -1.74 Total: -77.79 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -1.93 Total: -21.55 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Atomic # 16 Polarization: 4.09 SS G_CDS: -1.31 Total: 2.78 kcal Total: -69.93 0.67 -69.26 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075596764.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.190 kcal (2) G-P(sol) polarization free energy of solvation -69.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds