Wall clock time and date at job start Mon Mar 30 2020 02:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 119.99739 * 2 1 4 4 H 1.48504 * 109.47380 * 269.72157 * 3 2 1 5 5 H 1.48498 * 109.47508 * 29.72241 * 3 2 1 6 6 H 1.48502 * 109.47172 * 149.72615 * 3 2 1 7 7 C 1.37871 * 119.99866 * 179.72257 * 2 1 3 8 8 H 1.08008 * 119.99821 * 173.63838 * 7 2 1 9 9 C 1.50699 * 120.00152 * 353.63924 * 7 2 1 10 10 H 1.09000 * 109.47427 * 328.30186 * 9 7 2 11 11 C 1.53023 * 109.47752 * 88.31735 * 9 7 2 12 12 C 1.52132 * 108.73073 * 171.21582 * 11 9 7 13 13 N 1.32521 * 124.20012 * 162.44181 * 12 11 9 14 14 C 1.28662 * 117.87954 * 180.02562 * 13 12 11 15 15 S 1.70917 * 110.13996 * 359.97438 * 14 13 12 16 16 C 1.34607 * 122.64126 * 342.46059 * 12 11 9 17 17 C 1.50996 * 125.22357 * 359.92012 * 16 12 11 18 18 H 1.09004 * 109.61664 * 224.02460 * 17 16 12 19 19 O 1.42896 * 109.62218 * 103.66801 * 17 16 12 20 20 C 1.53147 * 109.47416 * 208.29629 * 9 7 2 21 21 H 0.96999 * 119.99695 * 174.56350 * 1 2 3 22 22 H 1.09003 * 109.59487 * 290.98818 * 11 9 7 23 23 H 1.09003 * 109.59448 * 51.28905 * 11 9 7 24 24 H 1.07995 * 124.93509 * 179.97438 * 14 13 12 25 25 H 0.96703 * 113.99982 * 59.99631 * 19 17 16 26 26 H 1.09007 * 109.55070 * 289.48097 * 20 9 7 27 27 H 1.08997 * 109.55175 * 49.76708 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5025 2.0431 -1.4001 5 1 1.4436 2.6544 0.6941 6 1 3.5438 1.4419 0.7058 7 6 2.0045 -1.1940 0.0058 8 1 3.0796 -1.1974 -0.0978 9 6 1.2580 -2.4944 0.1567 10 1 0.3749 -2.3367 0.7759 11 6 0.8303 -3.0002 -1.2228 12 6 0.2756 -4.4092 -1.0760 13 7 -0.4778 -5.0115 -1.9848 14 6 -0.8823 -6.2069 -1.7345 15 16 -0.3014 -6.7177 -0.2104 16 6 0.5088 -5.1720 0.0082 17 6 1.3322 -4.7573 1.2041 18 1 1.9894 -5.5759 1.4975 19 8 0.4661 -4.4244 2.2908 20 6 2.1683 -3.5317 0.8205 21 1 -0.4850 -0.8363 -0.0796 22 1 0.0603 -2.3448 -1.6299 23 1 1.6913 -3.0116 -1.8910 24 1 -1.4992 -6.8014 -2.3920 25 1 -0.1037 -5.1516 2.5766 26 1 2.9517 -3.8289 0.1232 27 1 2.6185 -3.1023 1.7155 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075596765.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:51 Heat of formation + Delta-G solvation = -20.335272 kcal Electronic energy + Delta-G solvation = -13516.824520 eV Core-core repulsion = 11172.771670 eV Total energy + Delta-G solvation = -2344.052850 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.80009 -37.16907 -34.85266 -32.12949 -29.03861 -28.92040 -24.79049 -24.18984 -22.23177 -20.54625 -18.40336 -17.97778 -16.83964 -16.16286 -15.00940 -14.44067 -14.12176 -13.97550 -13.68499 -13.12646 -12.96343 -11.99643 -11.60485 -11.50112 -11.32515 -10.75225 -10.39479 -10.29968 -10.08810 -9.95520 -9.43572 -9.20155 -9.02873 -8.47317 -8.43403 -8.24073 -6.33853 -4.06709 0.96831 1.60086 1.95441 3.15247 3.45666 3.49298 3.65070 4.45142 4.55646 4.70738 5.12431 5.26567 5.37338 5.51165 5.72139 6.05638 6.27552 6.41642 6.47246 6.67102 6.80982 6.94266 7.39178 7.60308 7.90751 8.05922 8.22324 8.46633 8.88163 9.66788 11.04384 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.045152 B = 0.008503 C = 0.007718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.974292 B = 3292.125535 C = 3626.943703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.023 3.977 3 Si 1.068 2.932 4 H -0.289 1.289 5 H -0.284 1.284 6 H -0.288 1.288 7 C -0.595 4.595 8 H 0.051 0.949 9 C 0.035 3.965 10 H 0.047 0.953 11 C -0.037 4.037 12 C 0.096 3.904 13 N -0.471 5.471 14 C 0.026 3.974 15 S 0.065 5.935 16 C -0.259 4.259 17 C 0.186 3.814 18 H 0.057 0.943 19 O -0.544 6.544 20 C -0.094 4.094 21 H 0.272 0.728 22 H 0.074 0.926 23 H 0.072 0.928 24 H 0.195 0.805 25 H 0.365 0.635 26 H 0.064 0.936 27 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.442 -12.928 0.408 12.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.182 4.182 3 Si 0.896 3.104 4 H -0.215 1.215 5 H -0.210 1.210 6 H -0.214 1.214 7 C -0.633 4.633 8 H 0.069 0.931 9 C 0.016 3.984 10 H 0.065 0.935 11 C -0.078 4.078 12 C -0.034 4.034 13 N -0.184 5.184 14 C -0.274 4.274 15 S 0.319 5.681 16 C -0.379 4.379 17 C 0.124 3.876 18 H 0.074 0.926 19 O -0.348 6.348 20 C -0.133 4.133 21 H 0.083 0.917 22 H 0.093 0.907 23 H 0.090 0.910 24 H 0.211 0.789 25 H 0.211 0.789 26 H 0.082 0.918 27 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.241 -11.411 0.462 11.422 hybrid contribution 0.001 -1.715 -0.420 1.765 sum 0.241 -13.125 0.042 13.127 Atomic orbital electron populations 1.70743 1.06958 1.31131 1.45448 1.25833 0.96455 1.02630 0.93320 0.83572 0.74824 0.75303 0.76667 1.21548 1.20951 1.21431 1.21888 0.94612 0.91375 1.55464 0.93050 1.18889 0.96037 0.93229 0.90243 0.93503 1.21101 0.99215 0.85001 1.02458 1.21925 0.94350 0.99103 0.87973 1.66014 1.11971 1.08052 1.32394 1.28140 1.04745 0.95716 0.98764 1.83543 1.47373 1.17716 1.19514 1.26878 1.10408 0.96117 1.04513 1.20415 0.88411 0.97993 0.80787 0.92568 1.86735 1.55912 1.41531 1.50626 1.21753 0.97250 0.93261 1.01038 0.91678 0.90732 0.90986 0.78860 0.78927 0.91764 0.90690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.46 13.55 55.43 0.75 -26.71 15 2 C 0.02 0.64 5.45 -17.82 -0.10 0.55 15 3 Si 1.07 25.04 29.91 -169.99 -5.08 19.95 15 4 H -0.29 -6.53 7.11 56.52 0.40 -6.13 15 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 6 H -0.29 -6.42 7.11 56.52 0.40 -6.02 15 7 C -0.60 -16.36 8.27 -34.44 -0.28 -16.65 15 8 H 0.05 1.39 7.82 -52.48 -0.41 0.98 15 9 C 0.04 0.88 1.66 -91.68 -0.15 0.72 15 10 H 0.05 1.31 6.60 -51.93 -0.34 0.97 15 11 C -0.04 -0.87 5.51 -27.16 -0.15 -1.02 15 12 C 0.10 2.00 6.78 -82.87 -0.56 1.44 15 13 N -0.47 -9.07 10.51 -11.16 -0.12 -9.19 15 14 C 0.03 0.38 12.22 51.43 0.63 1.01 15 15 S 0.07 0.90 23.21 -107.50 -2.50 -1.59 15 16 C -0.26 -4.71 6.00 -35.45 -0.21 -4.92 15 17 C 0.19 3.33 3.90 -27.61 -0.11 3.23 15 18 H 0.06 0.86 8.14 -51.93 -0.42 0.44 15 19 O -0.54 -9.93 12.92 -35.23 -0.46 -10.38 15 20 C -0.09 -1.97 4.92 -26.53 -0.13 -2.10 15 21 H 0.27 8.27 6.32 -40.82 -0.26 8.02 15 22 H 0.07 1.90 7.60 -51.93 -0.39 1.50 15 23 H 0.07 1.65 8.12 -51.93 -0.42 1.23 15 24 H 0.19 2.03 8.06 -52.49 -0.42 1.61 15 25 H 0.37 4.92 9.08 45.56 0.41 5.33 15 26 H 0.06 1.26 8.11 -51.92 -0.42 0.84 15 27 H 0.07 1.60 8.11 -51.93 -0.42 1.18 15 LS Contribution 244.08 15.07 3.68 3.68 Total: -1.00 -31.65 244.08 -6.69 -38.34 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -1.90 Total: 3.67 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: -1.07 Total: -17.75 kcal Atomic # 7 Polarization: -36.54 SS G_CDS: 0.63 Total: -35.90 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: -0.46 Total: -10.38 kcal Atomic # 14 Polarization: 25.04 SS G_CDS: -5.08 Total: 19.95 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -2.50 Total: -1.59 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -31.65 -6.69 -38.34 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075596765.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.000 kcal (2) G-P(sol) polarization free energy of solvation -31.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds