Wall clock time and date at job start Mon Mar 30 2020 02:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 119.99739 * 2 1 4 4 H 1.48504 * 109.47380 * 269.72157 * 3 2 1 5 5 H 1.48498 * 109.47508 * 29.72241 * 3 2 1 6 6 H 1.48502 * 109.47172 * 149.72615 * 3 2 1 7 7 C 1.37871 * 119.99866 * 179.72257 * 2 1 3 8 8 H 1.08008 * 119.99821 * 173.63838 * 7 2 1 9 9 C 1.50699 * 120.00152 * 353.63924 * 7 2 1 10 10 H 1.09000 * 109.47427 * 328.30186 * 9 7 2 11 11 C 1.53023 * 109.47752 * 88.31735 * 9 7 2 12 12 C 1.52132 * 108.73073 * 171.21582 * 11 9 7 13 13 N 1.32521 * 124.20012 * 162.44181 * 12 11 9 14 14 C 1.28662 * 117.87954 * 180.02562 * 13 12 11 15 15 S 1.70917 * 110.13996 * 359.97438 * 14 13 12 16 16 C 1.34607 * 122.64126 * 342.46059 * 12 11 9 17 17 C 1.50996 * 125.22357 * 359.92012 * 16 12 11 18 18 H 1.09004 * 109.61664 * 224.02460 * 17 16 12 19 19 O 1.42896 * 109.62218 * 103.66801 * 17 16 12 20 20 C 1.53147 * 109.47416 * 208.29629 * 9 7 2 21 21 H 0.96999 * 119.99695 * 174.56350 * 1 2 3 22 22 H 1.09003 * 109.59487 * 290.98818 * 11 9 7 23 23 H 1.09003 * 109.59448 * 51.28905 * 11 9 7 24 24 H 1.07995 * 124.93509 * 179.97438 * 14 13 12 25 25 H 0.96703 * 113.99982 * 59.99631 * 19 17 16 26 26 H 1.09007 * 109.55070 * 289.48097 * 20 9 7 27 27 H 1.08997 * 109.55175 * 49.76708 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5025 2.0431 -1.4001 5 1 1.4436 2.6544 0.6941 6 1 3.5438 1.4419 0.7058 7 6 2.0045 -1.1940 0.0058 8 1 3.0796 -1.1974 -0.0978 9 6 1.2580 -2.4944 0.1567 10 1 0.3749 -2.3367 0.7759 11 6 0.8303 -3.0002 -1.2228 12 6 0.2756 -4.4092 -1.0760 13 7 -0.4778 -5.0115 -1.9848 14 6 -0.8823 -6.2069 -1.7345 15 16 -0.3014 -6.7177 -0.2104 16 6 0.5088 -5.1720 0.0082 17 6 1.3322 -4.7573 1.2041 18 1 1.9894 -5.5759 1.4975 19 8 0.4661 -4.4244 2.2908 20 6 2.1683 -3.5317 0.8205 21 1 -0.4850 -0.8363 -0.0796 22 1 0.0603 -2.3448 -1.6299 23 1 1.6913 -3.0116 -1.8910 24 1 -1.4992 -6.8014 -2.3920 25 1 -0.1037 -5.1516 2.5766 26 1 2.9517 -3.8289 0.1232 27 1 2.6185 -3.1023 1.7155 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075596765.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:50 Heat of formation + Delta-G solvation = -44.253063 kcal Electronic energy + Delta-G solvation = -13517.861673 eV Core-core repulsion = 11172.771670 eV Total energy + Delta-G solvation = -2345.090003 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.24046 -38.62772 -36.63458 -34.02969 -30.68448 -30.50615 -26.70570 -25.66191 -23.89060 -22.26297 -19.90977 -19.45049 -18.56708 -17.76466 -16.37754 -16.16203 -15.63913 -15.58035 -15.40925 -14.65483 -14.48312 -13.82069 -13.38808 -13.31084 -12.89846 -12.57108 -11.97085 -11.93163 -11.90022 -11.66517 -11.14349 -10.61961 -10.52139 -10.42023 -10.31791 -9.66224 -8.60356 -6.32660 -0.30864 0.37358 0.68163 1.54251 1.63013 1.74328 1.80639 2.59303 3.10178 3.32992 3.38494 3.71813 3.88602 4.13316 4.23750 4.51196 4.55452 4.71724 4.80357 4.93136 5.03945 5.21104 5.48100 5.63737 6.08247 6.24681 6.62083 6.74641 6.78203 7.49695 8.77710 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.045152 B = 0.008503 C = 0.007718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.974292 B = 3292.125535 C = 3626.943703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.032 4.032 3 Si 1.115 2.885 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.605 4.605 8 H 0.053 0.947 9 C 0.036 3.964 10 H 0.006 0.994 11 C -0.026 4.026 12 C 0.064 3.936 13 N -0.516 5.516 14 C 0.025 3.975 15 S 0.179 5.821 16 C -0.281 4.281 17 C 0.190 3.810 18 H 0.097 0.903 19 O -0.566 6.566 20 C -0.093 4.093 21 H 0.256 0.744 22 H 0.035 0.965 23 H 0.064 0.936 24 H 0.238 0.762 25 H 0.387 0.613 26 H 0.075 0.925 27 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.916 -15.461 0.784 15.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.230 4.230 3 Si 0.937 3.063 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.643 4.643 8 H 0.071 0.929 9 C 0.017 3.983 10 H 0.024 0.976 11 C -0.067 4.067 12 C -0.066 4.066 13 N -0.230 5.230 14 C -0.273 4.273 15 S 0.434 5.566 16 C -0.402 4.402 17 C 0.129 3.871 18 H 0.115 0.885 19 O -0.374 6.374 20 C -0.132 4.132 21 H 0.066 0.934 22 H 0.054 0.946 23 H 0.083 0.917 24 H 0.254 0.746 25 H 0.235 0.765 26 H 0.094 0.906 27 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.718 -13.994 0.848 14.038 hybrid contribution -0.205 -1.113 -0.517 1.244 sum 0.513 -15.108 0.331 15.120 Atomic orbital electron populations 1.70869 1.08106 1.30168 1.48368 1.27309 0.96471 1.06590 0.92629 0.82973 0.74372 0.71361 0.77580 1.20049 1.21151 1.19204 1.22325 0.94883 0.92915 1.54174 0.92913 1.18754 0.94962 0.93842 0.90735 0.97578 1.20591 0.97939 0.87258 1.00867 1.21392 0.96794 0.98317 0.90127 1.65936 1.13513 1.10256 1.33294 1.28928 1.03525 0.94567 1.00230 1.83105 1.44065 1.12513 1.16930 1.27017 1.10618 0.99054 1.03477 1.20328 0.88632 0.97326 0.80861 0.88534 1.86692 1.56631 1.43415 1.50630 1.21625 0.97293 0.93895 1.00418 0.93422 0.94626 0.91737 0.74592 0.76458 0.90613 0.91680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.54 13.55 21.45 0.29 -59.25 15 2 C -0.03 -1.87 5.45 84.65 0.46 -1.41 15 3 Si 1.12 51.19 29.91 68.60 2.05 53.24 15 4 H -0.27 -11.90 7.11 99.48 0.71 -11.20 15 5 H -0.29 -13.12 7.11 99.48 0.71 -12.42 15 6 H -0.27 -11.25 7.11 99.48 0.71 -10.54 15 7 C -0.61 -34.44 8.27 25.60 0.21 -34.22 15 8 H 0.05 2.91 7.82 -2.91 -0.02 2.89 15 9 C 0.04 1.89 1.66 -11.48 -0.02 1.87 15 10 H 0.01 0.36 6.60 -2.39 -0.02 0.34 15 11 C -0.03 -1.29 5.51 30.32 0.17 -1.12 15 12 C 0.06 2.68 6.78 42.08 0.29 2.96 15 13 N -0.52 -19.44 10.51 -189.23 -1.99 -21.42 15 14 C 0.03 0.66 12.22 130.71 1.60 2.26 15 15 S 0.18 4.14 23.21 -56.49 -1.31 2.83 15 16 C -0.28 -9.68 6.00 24.95 0.15 -9.54 15 17 C 0.19 6.47 3.90 30.03 0.12 6.58 15 18 H 0.10 2.55 8.14 -2.39 -0.02 2.53 15 19 O -0.57 -19.91 12.92 -148.98 -1.92 -21.83 15 20 C -0.09 -3.93 4.92 30.73 0.15 -3.78 15 21 H 0.26 16.66 6.32 -92.71 -0.59 16.07 15 22 H 0.04 1.96 7.60 -2.39 -0.02 1.94 15 23 H 0.06 3.13 8.12 -2.39 -0.02 3.11 15 24 H 0.24 3.81 8.06 -2.91 -0.02 3.79 15 25 H 0.39 9.39 9.08 -74.06 -0.67 8.72 15 26 H 0.08 2.95 8.11 -2.38 -0.02 2.93 15 27 H 0.06 2.80 8.11 -2.39 -0.02 2.78 15 Total: -1.00 -72.82 244.08 0.94 -71.88 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: 0.71 Total: 10.95 kcal Atomic # 6 Polarization: -39.52 SS G_CDS: 3.12 Total: -36.39 kcal Atomic # 7 Polarization: -78.98 SS G_CDS: -1.70 Total: -80.68 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -1.92 Total: -21.83 kcal Atomic # 14 Polarization: 51.19 SS G_CDS: 2.05 Total: 53.24 kcal Atomic # 16 Polarization: 4.14 SS G_CDS: -1.31 Total: 2.83 kcal Total: -72.82 0.94 -71.88 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075596765.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.627 kcal (2) G-P(sol) polarization free energy of solvation -72.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds