Wall clock time and date at job start Mon Mar 30 2020 03:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36936 * 119.99865 * 2 1 4 4 H 1.08006 * 119.99922 * 189.54304 * 3 2 1 5 5 C 1.38811 * 120.00249 * 9.53464 * 3 2 1 6 6 N 1.31622 * 119.99646 * 9.87423 * 5 3 2 7 7 Si 1.86795 * 120.00222 * 189.87103 * 5 3 2 8 8 H 1.48500 * 109.47238 * 60.00527 * 7 5 3 9 9 H 1.48508 * 109.46857 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47096 * 299.99932 * 7 5 3 11 11 S 1.65602 * 120.00220 * 180.02562 * 2 1 3 12 12 O 1.42103 * 103.00083 * 174.68696 * 11 2 1 13 13 C 1.76198 * 102.99951 * 281.56266 * 11 2 1 14 14 C 1.38236 * 119.99995 * 337.77718 * 13 11 2 15 15 C 1.38234 * 119.99901 * 179.76863 * 14 13 11 16 16 C 1.38234 * 119.99919 * 0.50600 * 15 14 13 17 17 C 1.38234 * 120.00242 * 359.75234 * 16 15 14 18 18 C 1.38231 * 120.00102 * 158.05829 * 13 11 2 19 19 H 1.09005 * 109.46867 * 174.64161 * 1 2 3 20 20 H 1.09000 * 109.47130 * 294.63114 * 1 2 3 21 21 H 1.08996 * 109.47496 * 54.63975 * 1 2 3 22 22 H 0.96996 * 120.00255 * 179.97438 * 6 5 3 23 23 H 1.08004 * 119.99658 * 0.02562 * 14 13 11 24 24 H 1.08000 * 120.00190 * 180.23468 * 15 14 13 25 25 H 1.08000 * 120.00183 * 179.71945 * 16 15 14 26 26 H 1.07993 * 120.00436 * 179.97438 * 17 16 15 27 27 H 1.08010 * 119.99943 * 359.97438 * 18 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.2185 1.1924 -0.1551 5 6 1.4700 2.3798 0.1991 6 7 0.2100 2.3642 0.5793 7 14 2.3436 4.0084 -0.0724 8 1 2.8096 4.0915 -1.4799 9 1 1.4055 5.1256 0.2057 10 1 3.5100 4.1029 0.8418 11 16 2.2931 -1.4341 -0.0006 12 8 3.6468 -1.0215 -0.1287 13 6 2.1932 -1.9502 1.6811 14 6 1.9550 -1.0208 2.6763 15 6 1.8719 -1.4264 3.9952 16 6 2.0375 -2.7598 4.3200 17 6 2.2810 -3.6884 3.3254 18 6 2.3589 -3.2835 2.0060 19 1 -0.3633 -1.0232 -0.0960 20 1 -0.3633 0.4283 0.9341 21 1 -0.3634 0.5947 -0.8380 22 1 -0.2649 3.1983 0.7188 23 1 1.8297 0.0216 2.4229 24 1 1.6820 -0.7009 4.7724 25 1 1.9771 -3.0760 5.3509 26 1 2.4108 -4.7301 3.5791 27 1 2.5492 -4.0091 1.2288 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080686063.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:47 Heat of formation + Delta-G solvation = 7.691283 kcal Electronic energy + Delta-G solvation = -13440.368138 eV Core-core repulsion = 11097.530611 eV Total energy + Delta-G solvation = -2342.837527 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.25810 -35.26304 -34.46168 -30.92512 -30.36251 -30.18646 -26.14258 -23.00479 -22.06909 -21.89084 -17.78182 -17.05785 -16.26262 -15.45249 -14.77527 -14.42652 -13.87370 -13.63117 -13.26071 -12.85416 -12.43106 -12.14442 -11.53984 -11.44908 -11.10247 -10.87008 -10.58898 -10.50255 -10.36334 -9.92650 -9.41048 -8.98212 -8.47869 -8.36138 -7.90546 -7.36906 -5.90939 -3.55279 1.74043 1.96024 3.21220 3.34692 3.35019 3.48891 3.80628 4.26518 4.49694 5.24208 5.31054 5.32968 5.42080 5.55383 5.92698 6.16445 6.35757 6.41935 6.60297 6.85006 7.01846 7.08950 7.17263 7.35123 7.58602 7.75135 7.91164 8.80346 9.19157 9.65409 10.99357 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.035944 B = 0.009962 C = 0.009164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.809882 B = 2809.945285 C = 3054.810697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.141 3.859 2 N -0.733 5.733 3 C -0.287 4.287 4 H 0.099 0.901 5 C 0.025 3.975 6 N -0.897 5.897 7 Si 0.913 3.087 8 H -0.278 1.278 9 H -0.287 1.287 10 H -0.280 1.280 11 S 1.490 4.510 12 O -0.896 6.896 13 C -0.482 4.482 14 C -0.044 4.044 15 C -0.143 4.143 16 C -0.112 4.112 17 C -0.149 4.149 18 C -0.066 4.066 19 H 0.016 0.984 20 H 0.071 0.929 21 H 0.049 0.951 22 H 0.258 0.742 23 H 0.137 0.863 24 H 0.112 0.888 25 H 0.111 0.889 26 H 0.113 0.887 27 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.307 -9.921 1.513 10.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.006 4.006 2 N -0.558 5.558 3 C -0.422 4.422 4 H 0.116 0.884 5 C -0.177 4.177 6 N -0.541 5.541 7 Si 0.742 3.258 8 H -0.204 1.204 9 H -0.213 1.213 10 H -0.206 1.206 11 S 1.587 4.413 12 O -0.881 6.881 13 C -0.571 4.571 14 C -0.063 4.063 15 C -0.162 4.162 16 C -0.130 4.130 17 C -0.168 4.168 18 C -0.085 4.085 19 H 0.035 0.965 20 H 0.089 0.911 21 H 0.067 0.933 22 H 0.069 0.931 23 H 0.154 0.846 24 H 0.131 0.869 25 H 0.129 0.871 26 H 0.131 0.869 27 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.960 -10.206 0.839 10.427 hybrid contribution 1.139 2.263 1.855 3.140 sum -0.822 -7.944 2.694 8.428 Atomic orbital electron populations 1.21283 0.80120 0.95255 1.03967 1.50862 1.10568 1.15015 1.79331 1.19607 0.94161 0.83510 1.44898 0.88377 1.25151 0.96024 0.98702 0.97852 1.70114 1.09458 1.26330 1.48202 0.86208 0.78732 0.82142 0.78747 1.20379 1.21274 1.20552 1.68113 0.87903 0.95286 0.89956 1.92988 1.32933 1.79790 1.82425 1.30145 1.04227 0.98341 1.24398 1.21359 0.92713 1.00390 0.91857 1.21274 1.02049 0.95773 0.97093 1.21078 0.99768 0.93678 0.98522 1.21103 1.03086 0.98776 0.93794 1.20704 0.97370 0.94590 0.95866 0.96524 0.91051 0.93281 0.93113 0.84553 0.86945 0.87080 0.86858 0.86426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 3.07 9.02 59.85 0.54 3.61 15 2 N -0.73 -17.54 2.13 -66.69 -0.14 -17.68 15 3 C -0.29 -7.96 8.93 -15.06 -0.13 -8.10 15 4 H 0.10 2.95 6.73 -52.48 -0.35 2.60 15 5 C 0.03 0.69 5.35 -17.43 -0.09 0.60 15 6 N -0.90 -24.30 9.80 55.49 0.54 -23.75 15 7 Si 0.91 21.90 29.56 -169.99 -5.03 16.87 15 8 H -0.28 -6.63 7.11 56.52 0.40 -6.22 15 9 H -0.29 -6.75 7.11 56.52 0.40 -6.35 15 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 15 11 S 1.49 30.17 14.01 -107.50 -1.51 28.66 15 12 O -0.90 -23.69 15.97 -35.23 -0.56 -24.25 15 13 C -0.48 -9.70 5.78 -39.58 -0.23 -9.93 15 14 C -0.04 -0.96 9.43 -39.58 -0.37 -1.33 15 15 C -0.14 -2.68 10.05 -39.58 -0.40 -3.07 15 16 C -0.11 -1.82 10.05 -39.58 -0.40 -2.22 15 17 C -0.15 -2.32 10.05 -39.58 -0.40 -2.72 15 18 C -0.07 -1.10 9.75 -39.58 -0.39 -1.49 15 19 H 0.02 0.28 7.87 -51.93 -0.41 -0.13 15 20 H 0.07 1.73 6.56 -51.93 -0.34 1.39 15 21 H 0.05 1.13 7.64 -51.93 -0.40 0.73 15 22 H 0.26 6.79 8.31 -40.82 -0.34 6.45 15 23 H 0.14 3.41 6.74 -52.48 -0.35 3.05 15 24 H 0.11 1.90 8.06 -52.49 -0.42 1.48 15 25 H 0.11 1.46 8.06 -52.49 -0.42 1.04 15 26 H 0.11 1.39 8.06 -52.49 -0.42 0.97 15 27 H 0.12 1.55 8.06 -52.48 -0.42 1.12 15 LS Contribution 247.29 15.07 3.73 3.73 Total: -1.00 -33.87 247.29 -7.52 -41.38 By element: Atomic # 1 Polarization: 2.38 SS G_CDS: -2.68 Total: -0.29 kcal Atomic # 6 Polarization: -22.79 SS G_CDS: -1.87 Total: -24.66 kcal Atomic # 7 Polarization: -41.84 SS G_CDS: 0.40 Total: -41.44 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -0.56 Total: -24.25 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.87 kcal Atomic # 16 Polarization: 30.17 SS G_CDS: -1.51 Total: 28.66 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -33.87 -7.52 -41.38 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080686063.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.075 kcal (2) G-P(sol) polarization free energy of solvation -33.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds