Wall clock time and date at job start Mon Mar 30 2020 03:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36936 * 119.99865 * 2 1 4 4 H 1.08006 * 119.99922 * 189.54304 * 3 2 1 5 5 C 1.38811 * 120.00249 * 9.53464 * 3 2 1 6 6 N 1.31622 * 119.99646 * 9.87423 * 5 3 2 7 7 Si 1.86795 * 120.00222 * 189.87103 * 5 3 2 8 8 H 1.48500 * 109.47238 * 60.00527 * 7 5 3 9 9 H 1.48508 * 109.46857 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47096 * 299.99932 * 7 5 3 11 11 S 1.65602 * 120.00220 * 180.02562 * 2 1 3 12 12 O 1.42103 * 103.00083 * 174.68696 * 11 2 1 13 13 C 1.76198 * 102.99951 * 281.56266 * 11 2 1 14 14 C 1.38236 * 119.99995 * 337.77718 * 13 11 2 15 15 C 1.38234 * 119.99901 * 179.76863 * 14 13 11 16 16 C 1.38234 * 119.99919 * 0.50600 * 15 14 13 17 17 C 1.38234 * 120.00242 * 359.75234 * 16 15 14 18 18 C 1.38231 * 120.00102 * 158.05829 * 13 11 2 19 19 H 1.09005 * 109.46867 * 174.64161 * 1 2 3 20 20 H 1.09000 * 109.47130 * 294.63114 * 1 2 3 21 21 H 1.08996 * 109.47496 * 54.63975 * 1 2 3 22 22 H 0.96996 * 120.00255 * 179.97438 * 6 5 3 23 23 H 1.08004 * 119.99658 * 0.02562 * 14 13 11 24 24 H 1.08000 * 120.00190 * 180.23468 * 15 14 13 25 25 H 1.08000 * 120.00183 * 179.71945 * 16 15 14 26 26 H 1.07993 * 120.00436 * 179.97438 * 17 16 15 27 27 H 1.08010 * 119.99943 * 359.97438 * 18 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.2185 1.1924 -0.1551 5 6 1.4700 2.3798 0.1991 6 7 0.2100 2.3642 0.5793 7 14 2.3436 4.0084 -0.0724 8 1 2.8096 4.0915 -1.4799 9 1 1.4055 5.1256 0.2057 10 1 3.5100 4.1029 0.8418 11 16 2.2931 -1.4341 -0.0006 12 8 3.6468 -1.0215 -0.1287 13 6 2.1932 -1.9502 1.6811 14 6 1.9550 -1.0208 2.6763 15 6 1.8719 -1.4264 3.9952 16 6 2.0375 -2.7598 4.3200 17 6 2.2810 -3.6884 3.3254 18 6 2.3589 -3.2835 2.0060 19 1 -0.3633 -1.0232 -0.0960 20 1 -0.3633 0.4283 0.9341 21 1 -0.3634 0.5947 -0.8380 22 1 -0.2649 3.1983 0.7188 23 1 1.8297 0.0216 2.4229 24 1 1.6820 -0.7009 4.7724 25 1 1.9771 -3.0760 5.3509 26 1 2.4108 -4.7301 3.5791 27 1 2.5492 -4.0091 1.2288 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080686063.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:46 Heat of formation + Delta-G solvation = -15.453000 kcal Electronic energy + Delta-G solvation = -13441.371749 eV Core-core repulsion = 11097.530611 eV Total energy + Delta-G solvation = -2343.841139 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.65475 -37.17372 -36.42746 -32.90354 -31.76079 -31.63772 -28.07618 -24.90873 -23.51436 -23.32951 -19.61063 -18.71713 -18.09878 -17.14547 -16.32142 -16.12094 -15.66365 -15.14761 -15.10430 -14.29519 -14.05001 -13.83319 -13.34808 -13.23736 -12.83667 -12.69691 -12.35651 -12.23792 -12.02147 -11.91305 -11.23601 -10.98453 -10.02633 -9.79426 -9.76912 -9.16352 -7.93518 -5.64718 0.30447 0.55401 1.34382 1.36184 1.43215 1.72388 2.10662 2.51912 2.82565 3.18029 3.54092 4.07802 4.18329 4.28340 4.60939 4.65350 4.75015 5.03873 5.19598 5.32388 5.48037 5.52186 5.59071 5.61933 5.63566 6.07396 6.19211 6.75796 7.13937 7.60884 8.92231 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.035944 B = 0.009962 C = 0.009164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.809882 B = 2809.945285 C = 3054.810697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.150 3.850 2 N -0.760 5.760 3 C -0.307 4.307 4 H 0.066 0.934 5 C -0.014 4.014 6 N -0.910 5.910 7 Si 0.962 3.038 8 H -0.275 1.275 9 H -0.276 1.276 10 H -0.288 1.288 11 S 1.579 4.421 12 O -0.958 6.958 13 C -0.507 4.507 14 C -0.078 4.078 15 C -0.158 4.158 16 C -0.102 4.102 17 C -0.140 4.140 18 C -0.063 4.063 19 H 0.069 0.931 20 H 0.042 0.958 21 H 0.029 0.971 22 H 0.257 0.743 23 H 0.089 0.911 24 H 0.120 0.880 25 H 0.151 0.849 26 H 0.162 0.838 27 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.478 -12.802 2.529 13.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 N -0.584 5.584 3 C -0.441 4.441 4 H 0.084 0.916 5 C -0.214 4.214 6 N -0.554 5.554 7 Si 0.789 3.211 8 H -0.200 1.200 9 H -0.200 1.200 10 H -0.215 1.215 11 S 1.679 4.321 12 O -0.945 6.945 13 C -0.599 4.599 14 C -0.098 4.098 15 C -0.177 4.177 16 C -0.120 4.120 17 C -0.158 4.158 18 C -0.082 4.082 19 H 0.087 0.913 20 H 0.061 0.939 21 H 0.048 0.952 22 H 0.067 0.933 23 H 0.107 0.893 24 H 0.138 0.862 25 H 0.168 0.832 26 H 0.179 0.821 27 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -2.152 -13.044 1.820 13.345 hybrid contribution 1.215 2.905 1.682 3.570 sum -0.937 -10.139 3.501 10.767 Atomic orbital electron populations 1.21110 0.79081 0.97857 1.01595 1.50733 1.11400 1.14799 1.81459 1.19346 0.92934 0.85698 1.46095 0.91647 1.25693 0.96826 1.00876 0.98021 1.70261 1.09936 1.26525 1.48716 0.85478 0.77690 0.79583 0.78393 1.20027 1.20043 1.21492 1.66900 0.84397 0.92450 0.88372 1.92858 1.36848 1.80721 1.84048 1.29661 1.07392 1.00189 1.22690 1.21127 0.95896 0.98606 0.94150 1.21436 1.02622 0.97803 0.95875 1.21568 0.97212 0.92240 1.00941 1.21677 1.00420 1.00998 0.92706 1.21231 0.95363 0.93439 0.98184 0.91294 0.93920 0.95235 0.93318 0.89259 0.86229 0.83154 0.82066 0.82192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 6.67 9.02 127.77 1.15 7.82 15 2 N -0.76 -37.48 2.13 -364.90 -0.78 -38.26 15 3 C -0.31 -17.87 8.93 84.03 0.75 -17.12 15 4 H 0.07 4.18 6.73 -2.91 -0.02 4.16 15 5 C -0.01 -0.78 5.35 84.86 0.45 -0.33 15 6 N -0.91 -51.13 9.80 21.65 0.21 -50.92 15 7 Si 0.96 46.46 29.56 68.60 2.03 48.48 15 8 H -0.27 -13.00 7.11 99.48 0.71 -12.29 15 9 H -0.28 -12.67 7.11 99.48 0.71 -11.96 15 10 H -0.29 -14.21 7.11 99.48 0.71 -13.51 15 11 S 1.58 63.69 14.01 -56.49 -0.79 62.90 15 12 O -0.96 -51.68 15.97 -148.98 -2.38 -54.05 15 13 C -0.51 -19.76 5.78 22.27 0.13 -19.63 15 14 C -0.08 -3.44 9.43 22.27 0.21 -3.23 15 15 C -0.16 -5.73 10.05 22.27 0.22 -5.51 15 16 C -0.10 -2.85 10.05 22.27 0.22 -2.63 15 17 C -0.14 -3.56 10.05 22.27 0.22 -3.34 15 18 C -0.06 -1.84 9.75 22.27 0.22 -1.63 15 19 H 0.07 2.26 7.87 -2.38 -0.02 2.24 15 20 H 0.04 2.13 6.56 -2.39 -0.02 2.12 15 21 H 0.03 1.38 7.64 -2.39 -0.02 1.36 15 22 H 0.26 13.90 8.31 -92.71 -0.77 13.13 15 23 H 0.09 4.75 6.74 -2.91 -0.02 4.73 15 24 H 0.12 3.99 8.06 -2.91 -0.02 3.97 15 25 H 0.15 3.06 8.06 -2.91 -0.02 3.03 15 26 H 0.16 2.68 8.06 -2.91 -0.02 2.66 15 27 H 0.16 3.28 8.06 -2.91 -0.02 3.26 15 Total: -1.00 -77.59 247.29 3.04 -74.55 By element: Atomic # 1 Polarization: 1.73 SS G_CDS: 1.16 Total: 2.89 kcal Atomic # 6 Polarization: -49.17 SS G_CDS: 3.58 Total: -45.59 kcal Atomic # 7 Polarization: -88.61 SS G_CDS: -0.57 Total: -89.18 kcal Atomic # 8 Polarization: -51.68 SS G_CDS: -2.38 Total: -54.05 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.48 kcal Atomic # 16 Polarization: 63.69 SS G_CDS: -0.79 Total: 62.90 kcal Total: -77.59 3.04 -74.55 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080686063.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.094 kcal (2) G-P(sol) polarization free energy of solvation -77.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds