Wall clock time and date at job start Mon Mar 30 2020 03:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36934 * 120.00410 * 2 1 4 4 H 1.07995 * 120.00320 * 153.14607 * 3 2 1 5 5 C 1.38817 * 119.99842 * 333.15031 * 3 2 1 6 6 N 1.31622 * 119.99963 * 350.61438 * 5 3 2 7 7 Si 1.86802 * 120.00115 * 170.62221 * 5 3 2 8 8 H 1.48497 * 109.46917 * 359.97438 * 7 5 3 9 9 H 1.48495 * 109.47342 * 119.99541 * 7 5 3 10 10 H 1.48501 * 109.46968 * 239.99880 * 7 5 3 11 11 S 1.65606 * 119.99879 * 180.02562 * 2 1 3 12 12 O 1.42099 * 102.99931 * 114.07814 * 11 2 1 13 13 C 1.76200 * 102.99838 * 7.20328 * 11 2 1 14 14 C 1.38226 * 119.99994 * 229.61761 * 13 11 2 15 15 C 1.38240 * 120.00057 * 180.02562 * 14 13 11 16 16 C 1.38234 * 120.00031 * 359.95319 * 15 14 13 17 17 C 1.38241 * 119.99783 * 0.28154 * 16 15 14 18 18 C 1.38231 * 119.99759 * 359.50982 * 17 16 15 19 19 H 1.08997 * 109.47198 * 204.50467 * 1 2 3 20 20 H 1.09004 * 109.47204 * 324.50002 * 1 2 3 21 21 H 1.08994 * 109.47397 * 84.49765 * 1 2 3 22 22 H 0.97003 * 120.00161 * 179.97438 * 6 5 3 23 23 H 1.07997 * 120.00476 * 359.97438 * 14 13 11 24 24 H 1.08003 * 120.00031 * 179.97438 * 15 14 13 25 25 H 1.07995 * 120.00109 * 180.02562 * 16 15 14 26 26 H 1.07999 * 119.99662 * 179.72661 * 17 16 15 27 27 H 1.08006 * 120.00034 * 180.26068 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1423 1.2363 0.4225 5 6 1.5679 2.3232 -0.5430 6 7 0.4433 2.2279 -1.2202 7 14 2.3812 3.9891 -0.3127 8 1 3.6258 3.8268 0.4808 9 1 2.7118 4.5663 -1.6403 10 1 1.4521 4.8985 0.4050 11 16 2.2930 -1.4342 -0.0006 12 8 2.9420 -1.4280 -1.2647 13 6 1.0160 -2.6289 -0.2165 14 6 0.9438 -3.7231 0.6251 15 6 -0.0577 -4.6607 0.4555 16 6 -0.9876 -4.5036 -0.5552 17 6 -0.9125 -3.4119 -1.3999 18 6 0.0864 -2.4721 -1.2275 19 1 -0.3633 -0.9351 0.4262 20 1 -0.3634 0.8367 0.5968 21 1 -0.3634 0.0985 -1.0229 22 1 0.0366 3.0227 -1.5993 23 1 1.6703 -3.8459 1.4147 24 1 -0.1139 -5.5158 1.1128 25 1 -1.7703 -5.2359 -0.6874 26 1 -1.6364 -3.2915 -2.1923 27 1 0.1426 -1.6169 -1.8848 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080686065.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:49 Heat of formation + Delta-G solvation = 8.467702 kcal Electronic energy + Delta-G solvation = -13398.851029 eV Core-core repulsion = 11056.047169 eV Total energy + Delta-G solvation = -2342.803859 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.55787 -35.03686 -34.26974 -31.20872 -30.57281 -30.29965 -26.01894 -22.90435 -22.27415 -22.16696 -18.01210 -16.81140 -16.14213 -15.53640 -14.82963 -14.61334 -13.98305 -13.67188 -13.25368 -12.81519 -12.59012 -12.37357 -11.62693 -11.26494 -11.16724 -10.99503 -10.73371 -10.57707 -10.27667 -10.23164 -9.26274 -8.93355 -8.62490 -8.42373 -7.94529 -6.97632 -5.93060 -3.60435 1.50127 1.77936 3.12519 3.32748 3.37206 3.40446 3.79781 4.17722 4.50921 5.16607 5.22769 5.26440 5.37002 5.44011 5.76737 5.94283 6.20529 6.38342 6.50505 6.68209 6.79330 6.85061 7.11800 7.34452 7.41784 7.61366 7.87625 8.71608 9.28385 9.72983 11.05087 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.051181 B = 0.008750 C = 0.008052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.945803 B = 3199.140442 C = 3476.767319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.138 3.862 2 N -0.755 5.755 3 C -0.275 4.275 4 H 0.084 0.916 5 C 0.027 3.973 6 N -0.886 5.886 7 Si 0.912 3.088 8 H -0.271 1.271 9 H -0.286 1.286 10 H -0.284 1.284 11 S 1.499 4.501 12 O -0.919 6.919 13 C -0.464 4.464 14 C -0.055 4.055 15 C -0.148 4.148 16 C -0.102 4.102 17 C -0.145 4.145 18 C -0.038 4.038 19 H 0.019 0.981 20 H 0.049 0.951 21 H 0.039 0.961 22 H 0.259 0.741 23 H 0.128 0.872 24 H 0.118 0.882 25 H 0.115 0.885 26 H 0.116 0.884 27 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.687 -9.896 7.009 12.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.010 4.010 2 N -0.584 5.584 3 C -0.410 4.410 4 H 0.102 0.898 5 C -0.178 4.178 6 N -0.527 5.527 7 Si 0.740 3.260 8 H -0.195 1.195 9 H -0.213 1.213 10 H -0.211 1.211 11 S 1.603 4.397 12 O -0.902 6.902 13 C -0.556 4.556 14 C -0.074 4.074 15 C -0.167 4.167 16 C -0.120 4.120 17 C -0.164 4.164 18 C -0.057 4.057 19 H 0.038 0.962 20 H 0.068 0.932 21 H 0.058 0.942 22 H 0.069 0.931 23 H 0.145 0.855 24 H 0.136 0.864 25 H 0.133 0.867 26 H 0.134 0.866 27 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.834 -9.984 6.920 12.177 hybrid contribution -1.161 1.100 -2.029 2.583 sum -1.996 -8.884 4.891 10.336 Atomic orbital electron populations 1.21221 0.82386 0.96925 1.00422 1.50387 1.09426 1.13692 1.84938 1.19108 1.01636 0.85336 1.34962 0.89848 1.25404 0.97044 0.99708 0.95607 1.70054 1.19087 1.28710 1.34896 0.86095 0.79105 0.83019 0.77750 1.19537 1.21282 1.21054 1.69856 0.82680 0.79315 1.07821 1.92924 1.69308 1.82639 1.45329 1.29053 1.14623 1.11516 1.00391 1.20796 0.96968 0.92649 0.96996 1.21152 0.96531 0.99816 0.99191 1.21143 0.98317 0.97273 0.95289 1.21242 0.99533 0.95524 1.00143 1.21310 0.92246 0.97185 0.94996 0.96241 0.93207 0.94248 0.93124 0.85454 0.86355 0.86686 0.86591 0.85700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 3.34 7.13 59.85 0.43 3.77 15 2 N -0.75 -18.91 3.27 -66.69 -0.22 -19.13 15 3 C -0.27 -7.49 9.55 -15.06 -0.14 -7.64 15 4 H 0.08 2.14 7.85 -52.49 -0.41 1.73 15 5 C 0.03 0.75 5.17 -17.43 -0.09 0.66 15 6 N -0.89 -25.75 10.75 55.49 0.60 -25.15 15 7 Si 0.91 21.33 29.56 -169.99 -5.03 16.30 15 8 H -0.27 -6.06 7.11 56.52 0.40 -5.65 15 9 H -0.29 -6.85 7.11 56.52 0.40 -6.45 15 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 11 S 1.50 31.33 14.08 -107.50 -1.51 29.81 15 12 O -0.92 -25.50 17.61 -35.23 -0.62 -26.12 15 13 C -0.46 -8.85 4.31 -39.59 -0.17 -9.02 15 14 C -0.05 -0.82 9.75 -39.59 -0.39 -1.21 15 15 C -0.15 -2.03 10.05 -39.58 -0.40 -2.43 15 16 C -0.10 -1.47 10.05 -39.58 -0.40 -1.87 15 17 C -0.15 -2.46 10.05 -39.58 -0.40 -2.86 15 18 C -0.04 -0.78 7.28 -39.58 -0.29 -1.07 15 19 H 0.02 0.41 5.67 -51.93 -0.29 0.11 15 20 H 0.05 1.25 7.53 -51.93 -0.39 0.86 15 21 H 0.04 1.05 6.22 -51.93 -0.32 0.73 15 22 H 0.26 7.17 8.31 -40.82 -0.34 6.83 15 23 H 0.13 1.39 8.06 -52.49 -0.42 0.97 15 24 H 0.12 1.23 8.06 -52.48 -0.42 0.81 15 25 H 0.12 1.30 8.06 -52.49 -0.42 0.88 15 26 H 0.12 1.73 8.06 -52.49 -0.42 1.31 15 27 H 0.13 2.94 6.67 -52.48 -0.35 2.59 15 LS Contribution 244.42 15.07 3.68 3.68 Total: -1.00 -36.14 244.42 -7.54 -43.68 By element: Atomic # 1 Polarization: 1.17 SS G_CDS: -2.60 Total: -1.43 kcal Atomic # 6 Polarization: -19.82 SS G_CDS: -1.85 Total: -21.67 kcal Atomic # 7 Polarization: -44.65 SS G_CDS: 0.38 Total: -44.28 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: -0.62 Total: -26.12 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.30 kcal Atomic # 16 Polarization: 31.33 SS G_CDS: -1.51 Total: 29.81 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -36.14 -7.54 -43.68 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080686065.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.148 kcal (2) G-P(sol) polarization free energy of solvation -36.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds