Wall clock time and date at job start Mon Mar 30 2020 03:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30857 * 1 3 3 Si 1.86802 * 119.99757 * 2 1 4 4 H 1.48497 * 109.46974 * 239.99052 * 3 2 1 5 5 H 1.48495 * 109.47427 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47047 * 119.99789 * 3 2 1 7 7 C 1.39864 * 120.00180 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00320 * 180.02562 * 7 2 1 9 9 C 1.41157 * 120.00035 * 0.02562 * 7 2 1 10 10 N 1.32213 * 120.83240 * 0.02706 * 9 7 2 11 11 S 1.70020 * 105.77926 * 179.97438 * 10 9 7 12 12 C 1.77369 * 94.35449 * 359.97438 * 11 10 9 13 13 N 1.37996 * 127.69540 * 179.97438 * 12 11 10 14 14 C 1.48534 * 111.00231 * 242.63131 * 13 12 11 15 15 C 1.54930 * 103.22802 * 159.72189 * 14 13 12 16 16 C 1.54593 * 102.92614 * 322.58714 * 15 14 13 17 17 C 1.47902 * 111.00270 * 0.02691 * 13 12 11 18 18 N 1.31351 * 104.60345 * 0.02562 * 12 11 10 19 19 H 0.97008 * 120.00110 * 0.02562 * 1 2 3 20 20 H 1.09001 * 110.66238 * 278.16161 * 14 13 12 21 21 H 1.09002 * 110.66548 * 41.28224 * 14 13 12 22 22 H 1.08999 * 110.72639 * 204.22694 * 15 14 13 23 23 H 1.09000 * 110.87640 * 81.01833 * 15 14 13 24 24 H 1.09005 * 110.30701 * 263.04411 * 16 15 14 25 25 H 1.08998 * 110.31344 * 140.87447 * 16 15 14 26 26 H 1.08998 * 109.91741 * 333.51218 * 17 13 12 27 27 H 1.09002 * 109.91496 * 94.80038 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 3.0964 1.6964 -1.2124 5 1 1.2776 2.7465 -0.0006 6 1 3.0963 1.6965 1.2126 7 6 2.0079 -1.2112 0.0005 8 1 3.0879 -1.2113 0.0010 9 6 1.3022 -2.4337 0.0005 10 7 -0.0198 -2.4530 -0.0005 11 16 -0.4583 -4.0957 -0.0008 12 6 1.2158 -4.6819 -0.0003 13 7 1.6513 -5.9913 0.0002 14 6 2.4239 -6.2949 1.2319 15 6 2.3635 -7.8407 1.3163 16 6 0.9320 -8.1581 0.8266 17 6 0.5083 -6.9301 -0.0004 18 7 1.9484 -3.5917 0.0007 19 1 -0.4851 0.8401 -0.0004 20 1 3.4548 -5.9549 1.1329 21 1 1.9509 -5.8431 2.1039 22 1 2.5030 -8.1767 2.3438 23 1 3.1054 -8.2949 0.6595 24 1 0.2623 -8.2913 1.6763 25 1 0.9350 -9.0518 0.2026 26 1 -0.3611 -6.4569 0.4560 27 1 0.2765 -7.2322 -1.0217 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082387165.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:36 Heat of formation + Delta-G solvation = 55.595496 kcal Electronic energy + Delta-G solvation = -13125.440620 eV Core-core repulsion = 10816.973126 eV Total energy + Delta-G solvation = -2308.467493 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.063 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.21928 -37.59789 -33.56095 -31.91335 -29.08535 -28.80383 -26.96523 -23.35282 -21.28682 -20.96737 -19.12877 -17.21640 -16.62683 -15.89983 -15.68528 -14.75254 -14.19153 -13.55576 -13.28107 -12.84893 -12.39567 -12.30796 -11.53149 -11.40151 -11.22826 -11.19277 -11.16053 -10.61605 -10.47314 -10.07235 -9.81016 -9.36588 -8.94736 -8.21121 -8.03576 -7.38995 -6.60247 -4.70111 2.04458 2.54025 3.05699 3.09169 3.12499 3.66668 3.91390 4.14344 4.27337 4.63212 4.75725 4.96833 5.35255 5.37166 5.49183 5.75860 5.76720 5.83246 5.96454 6.06327 6.07194 6.25541 6.74185 7.13438 7.29568 7.67162 8.08134 8.50046 8.65218 9.54768 10.28784 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.059147 B = 0.007410 C = 0.006736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.279656 B = 3777.946155 C = 4156.041339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.737 5.737 2 C 0.062 3.938 3 Si 0.925 3.075 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.398 4.398 8 H 0.093 0.907 9 C 0.350 3.650 10 N -0.461 5.461 11 S -0.065 6.065 12 C 0.266 3.734 13 N -0.423 5.423 14 C 0.049 3.951 15 C -0.123 4.123 16 C -0.128 4.128 17 C 0.032 3.968 18 N -0.522 5.522 19 H 0.278 0.722 20 H 0.094 0.906 21 H 0.055 0.945 22 H 0.076 0.924 23 H 0.077 0.923 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.068 0.932 27 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.293 -10.760 2.550 11.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.364 5.364 2 C -0.162 4.162 3 Si 0.749 3.251 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.444 4.444 8 H 0.111 0.889 9 C 0.092 3.908 10 N -0.297 5.297 11 S 0.063 5.937 12 C -0.118 4.118 13 N -0.145 5.145 14 C -0.079 4.079 15 C -0.162 4.162 16 C -0.167 4.167 17 C -0.096 4.096 18 N -0.247 5.247 19 H 0.090 0.910 20 H 0.112 0.888 21 H 0.073 0.927 22 H 0.095 0.905 23 H 0.096 0.904 24 H 0.090 0.910 25 H 0.094 0.906 26 H 0.086 0.914 27 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.256 -10.242 2.073 10.524 hybrid contribution 0.705 0.918 0.484 1.254 sum 1.961 -9.324 2.557 9.865 Atomic orbital electron populations 1.69933 1.07149 1.28548 1.30772 1.25951 0.95025 1.01294 0.93905 0.86085 0.79640 0.79420 0.79929 1.18827 1.20252 1.18860 1.18819 0.94370 0.86609 1.44563 0.88886 1.20110 0.86636 0.90429 0.93630 1.79494 1.12002 0.94636 1.43565 1.85509 1.18129 1.11241 1.78813 1.27507 0.93593 0.92375 0.98336 1.60845 1.19195 0.98335 1.36132 1.23293 0.99619 0.95348 0.89634 1.22528 0.97089 0.94902 1.01647 1.22401 0.96904 0.97649 0.99700 1.23193 0.91952 0.92388 1.02062 1.67711 1.37038 0.97328 1.22625 0.91025 0.88813 0.92655 0.90548 0.90381 0.90981 0.90555 0.91416 0.89270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -20.70 11.55 55.54 0.64 -20.06 15 2 C 0.06 1.65 5.49 -17.36 -0.10 1.55 15 3 Si 0.93 19.35 29.56 -169.99 -5.02 14.32 15 4 H -0.26 -5.41 7.11 56.52 0.40 -5.00 15 5 H -0.28 -5.62 7.11 56.52 0.40 -5.22 15 6 H -0.26 -5.38 7.11 56.52 0.40 -4.98 15 7 C -0.40 -11.28 9.39 -37.87 -0.36 -11.64 15 8 H 0.09 2.49 7.84 -52.49 -0.41 2.08 15 9 C 0.35 10.30 7.22 -160.30 -1.16 9.14 15 10 N -0.46 -13.75 9.84 28.99 0.29 -13.46 15 11 S -0.06 -1.60 21.86 -107.50 -2.35 -3.95 15 12 C 0.27 6.23 7.05 -86.90 -0.61 5.62 15 13 N -0.42 -7.83 5.35 -169.12 -0.90 -8.74 15 14 C 0.05 0.75 6.49 -1.90 -0.01 0.74 15 15 C -0.12 -1.35 7.06 -24.88 -0.18 -1.52 15 16 C -0.13 -1.38 6.93 -25.38 -0.18 -1.56 15 17 C 0.03 0.48 6.36 -2.75 -0.02 0.46 15 18 N -0.52 -14.04 10.59 -14.10 -0.15 -14.19 15 19 H 0.28 7.07 8.30 -40.82 -0.34 6.74 15 20 H 0.09 1.46 8.14 -51.93 -0.42 1.04 15 21 H 0.06 0.90 7.99 -51.93 -0.42 0.49 15 22 H 0.08 0.68 8.14 -51.93 -0.42 0.26 15 23 H 0.08 0.79 8.14 -51.93 -0.42 0.37 15 24 H 0.07 0.70 8.14 -51.93 -0.42 0.28 15 25 H 0.08 0.68 8.14 -51.93 -0.42 0.26 15 26 H 0.07 1.09 6.16 -51.92 -0.32 0.77 15 27 H 0.09 1.23 8.14 -51.93 -0.42 0.81 15 LS Contribution 245.21 15.07 3.70 3.70 Total: -1.00 -32.51 245.21 -9.23 -41.74 By element: Atomic # 1 Polarization: 0.68 SS G_CDS: -2.82 Total: -2.13 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: -2.60 Total: 2.79 kcal Atomic # 7 Polarization: -56.33 SS G_CDS: -0.13 Total: -56.45 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.02 Total: 14.32 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.35 Total: -3.95 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -32.51 -9.23 -41.74 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082387165.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.332 kcal (2) G-P(sol) polarization free energy of solvation -32.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds