Wall clock time and date at job start Mon Mar 30 2020 03:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30857 * 1 3 3 Si 1.86802 * 119.99757 * 2 1 4 4 H 1.48497 * 109.46974 * 239.99052 * 3 2 1 5 5 H 1.48495 * 109.47427 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47047 * 119.99789 * 3 2 1 7 7 C 1.39864 * 120.00180 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00320 * 180.02562 * 7 2 1 9 9 C 1.41157 * 120.00035 * 0.02562 * 7 2 1 10 10 N 1.32213 * 120.83240 * 0.02706 * 9 7 2 11 11 S 1.70020 * 105.77926 * 179.97438 * 10 9 7 12 12 C 1.77369 * 94.35449 * 359.97438 * 11 10 9 13 13 N 1.37996 * 127.69540 * 179.97438 * 12 11 10 14 14 C 1.48534 * 111.00231 * 242.63131 * 13 12 11 15 15 C 1.54930 * 103.22802 * 159.72189 * 14 13 12 16 16 C 1.54593 * 102.92614 * 322.58714 * 15 14 13 17 17 C 1.47902 * 111.00270 * 0.02691 * 13 12 11 18 18 N 1.31351 * 104.60345 * 0.02562 * 12 11 10 19 19 H 0.97008 * 120.00110 * 0.02562 * 1 2 3 20 20 H 1.09001 * 110.66238 * 278.16161 * 14 13 12 21 21 H 1.09002 * 110.66548 * 41.28224 * 14 13 12 22 22 H 1.08999 * 110.72639 * 204.22694 * 15 14 13 23 23 H 1.09000 * 110.87640 * 81.01833 * 15 14 13 24 24 H 1.09005 * 110.30701 * 263.04411 * 16 15 14 25 25 H 1.08998 * 110.31344 * 140.87447 * 16 15 14 26 26 H 1.08998 * 109.91741 * 333.51218 * 17 13 12 27 27 H 1.09002 * 109.91496 * 94.80038 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 3.0964 1.6964 -1.2124 5 1 1.2776 2.7465 -0.0006 6 1 3.0963 1.6965 1.2126 7 6 2.0079 -1.2112 0.0005 8 1 3.0879 -1.2113 0.0010 9 6 1.3022 -2.4337 0.0005 10 7 -0.0198 -2.4530 -0.0005 11 16 -0.4583 -4.0957 -0.0008 12 6 1.2158 -4.6819 -0.0003 13 7 1.6513 -5.9913 0.0002 14 6 2.4239 -6.2949 1.2319 15 6 2.3635 -7.8407 1.3163 16 6 0.9320 -8.1581 0.8266 17 6 0.5083 -6.9301 -0.0004 18 7 1.9484 -3.5917 0.0007 19 1 -0.4851 0.8401 -0.0004 20 1 3.4548 -5.9549 1.1329 21 1 1.9509 -5.8431 2.1039 22 1 2.5030 -8.1767 2.3438 23 1 3.1054 -8.2949 0.6595 24 1 0.2623 -8.2913 1.6763 25 1 0.9350 -9.0518 0.2026 26 1 -0.3611 -6.4569 0.4560 27 1 0.2765 -7.2322 -1.0217 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082387165.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:36 Heat of formation + Delta-G solvation = 32.844985 kcal Electronic energy + Delta-G solvation = -13126.427156 eV Core-core repulsion = 10816.973126 eV Total energy + Delta-G solvation = -2309.454030 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.063 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.74612 -39.38959 -35.50595 -33.40084 -30.84935 -30.04145 -29.06004 -25.02457 -22.79886 -22.09408 -20.89833 -19.04871 -18.68833 -17.50499 -16.90246 -16.63974 -15.74285 -15.09169 -14.92580 -14.18126 -13.74664 -13.61056 -13.40755 -13.17054 -12.87606 -12.48074 -12.22869 -12.18107 -11.92341 -11.69536 -11.41879 -11.25790 -10.87656 -10.19730 -9.98763 -9.27729 -8.58454 -6.83571 0.13774 0.62254 1.38216 1.40917 1.54353 1.80638 2.16429 2.19333 2.54439 3.27315 3.53471 3.73891 4.00640 4.18652 4.26765 4.47417 4.65086 4.82072 4.88633 4.95716 5.08690 5.12880 5.19932 5.43467 5.61008 5.70754 6.00804 6.46195 6.57968 7.49594 8.33124 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.059147 B = 0.007410 C = 0.006736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.279656 B = 3777.946155 C = 4156.041339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.017 3.983 3 Si 1.011 2.989 4 H -0.255 1.255 5 H -0.265 1.265 6 H -0.254 1.254 7 C -0.432 4.432 8 H 0.097 0.903 9 C 0.330 3.670 10 N -0.517 5.517 11 S -0.058 6.058 12 C 0.291 3.709 13 N -0.427 5.427 14 C 0.041 3.959 15 C -0.109 4.109 16 C -0.118 4.118 17 C 0.022 3.978 18 N -0.558 5.558 19 H 0.286 0.714 20 H 0.088 0.912 21 H 0.043 0.957 22 H 0.105 0.895 23 H 0.092 0.908 24 H 0.087 0.913 25 H 0.105 0.895 26 H 0.054 0.946 27 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.282 -12.077 2.947 12.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.203 4.203 3 Si 0.829 3.171 4 H -0.179 1.179 5 H -0.190 1.190 6 H -0.177 1.177 7 C -0.477 4.477 8 H 0.115 0.885 9 C 0.072 3.928 10 N -0.354 5.354 11 S 0.071 5.929 12 C -0.092 4.092 13 N -0.150 5.150 14 C -0.086 4.086 15 C -0.147 4.147 16 C -0.156 4.156 17 C -0.105 4.105 18 N -0.285 5.285 19 H 0.097 0.903 20 H 0.106 0.894 21 H 0.061 0.939 22 H 0.124 0.876 23 H 0.111 0.889 24 H 0.106 0.894 25 H 0.124 0.876 26 H 0.072 0.928 27 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.234 -11.618 2.476 12.087 hybrid contribution 0.393 1.103 0.341 1.220 sum 2.627 -10.514 2.817 11.198 Atomic orbital electron populations 1.70053 1.09184 1.30126 1.30993 1.27100 0.95851 1.05067 0.92259 0.84838 0.78180 0.73673 0.80429 1.17919 1.18963 1.17747 1.19276 0.94866 0.87646 1.45902 0.88505 1.20536 0.87011 0.91672 0.93570 1.79342 1.12623 0.98001 1.45463 1.85163 1.18881 1.09463 1.79434 1.28000 0.92416 0.93772 0.95059 1.61013 1.20602 0.96121 1.37229 1.23480 0.98477 0.99106 0.87508 1.22554 0.97583 0.90635 1.03917 1.22440 0.96793 0.96327 1.00021 1.23445 0.90237 0.93147 1.03645 1.67741 1.37329 0.97684 1.25724 0.90286 0.89404 0.93855 0.87647 0.88939 0.89401 0.87634 0.92803 0.88289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -44.72 11.55 21.81 0.25 -44.47 15 2 C 0.02 0.94 5.49 85.23 0.47 1.40 15 3 Si 1.01 39.65 29.56 68.60 2.03 41.68 15 4 H -0.26 -9.59 7.11 99.48 0.71 -8.88 15 5 H -0.27 -9.79 7.11 99.48 0.71 -9.08 15 6 H -0.25 -9.45 7.11 99.48 0.71 -8.74 15 7 C -0.43 -25.24 9.39 23.38 0.22 -25.02 15 8 H 0.10 5.33 7.84 -2.91 -0.02 5.31 15 9 C 0.33 20.14 7.22 135.68 0.98 21.12 15 10 N -0.52 -32.05 9.84 -62.18 -0.61 -32.66 15 11 S -0.06 -2.92 21.86 -56.49 -1.23 -4.16 15 12 C 0.29 13.80 7.05 179.05 1.26 15.06 15 13 N -0.43 -15.39 5.35 -688.96 -3.68 -19.07 15 14 C 0.04 1.21 6.49 86.65 0.56 1.77 15 15 C -0.11 -1.94 7.06 31.80 0.22 -1.72 15 16 C -0.12 -2.05 6.93 31.47 0.22 -1.84 15 17 C 0.02 0.62 6.36 86.45 0.55 1.17 15 18 N -0.56 -30.90 10.59 -198.52 -2.10 -33.00 15 19 H 0.29 14.80 8.30 -92.70 -0.77 14.03 15 20 H 0.09 2.66 8.14 -2.39 -0.02 2.64 15 21 H 0.04 1.38 7.99 -2.39 -0.02 1.36 15 22 H 0.11 1.37 8.14 -2.39 -0.02 1.35 15 23 H 0.09 1.45 8.14 -2.39 -0.02 1.43 15 24 H 0.09 1.32 8.14 -2.38 -0.02 1.30 15 25 H 0.11 1.32 8.14 -2.39 -0.02 1.30 15 26 H 0.05 1.67 6.16 -2.39 -0.01 1.65 15 27 H 0.10 2.52 8.14 -2.39 -0.02 2.50 15 Total: -1.00 -73.86 245.21 0.31 -73.55 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: 1.18 Total: 6.18 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: 4.48 Total: 11.96 kcal Atomic # 7 Polarization: -123.06 SS G_CDS: -6.15 Total: -129.21 kcal Atomic # 14 Polarization: 39.65 SS G_CDS: 2.03 Total: 41.68 kcal Atomic # 16 Polarization: -2.92 SS G_CDS: -1.23 Total: -4.16 kcal Total: -73.86 0.31 -73.55 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082387165.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.391 kcal (2) G-P(sol) polarization free energy of solvation -73.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds