Wall clock time and date at job start Mon Mar 30 2020 03:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30644 * 1 3 3 Si 1.86794 * 120.00543 * 2 1 4 4 H 1.48491 * 109.47447 * 240.00204 * 3 2 1 5 5 H 1.48504 * 109.46883 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47066 * 119.99908 * 3 2 1 7 7 C 1.40292 * 119.99516 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99594 * 179.97438 * 7 2 1 9 9 C 1.40060 * 119.99809 * 0.27894 * 7 2 1 10 10 N 1.33456 * 127.92268 * 179.72173 * 9 7 2 11 11 C 1.30532 * 116.67112 * 180.02562 * 10 9 7 12 12 N 1.39074 * 120.44058 * 180.02562 * 11 10 9 13 13 C 1.48534 * 110.99602 * 62.60120 * 12 11 10 14 14 C 1.54940 * 103.22522 * 159.72243 * 13 12 11 15 15 C 1.54598 * 102.91959 * 322.58988 * 14 13 12 16 16 C 1.47895 * 111.00175 * 179.97438 * 12 11 10 17 17 N 1.31566 * 119.12353 * 359.97438 * 11 10 9 18 18 S 1.70058 * 105.91336 * 359.72792 * 17 11 10 19 19 H 0.97005 * 119.99573 * 359.97438 * 1 2 3 20 20 H 1.08993 * 110.67255 * 278.15659 * 13 12 11 21 21 H 1.09005 * 110.66807 * 41.29000 * 13 12 11 22 22 H 1.09000 * 110.72369 * 204.23239 * 14 13 12 23 23 H 1.08995 * 110.87687 * 81.01290 * 14 13 12 24 24 H 1.09003 * 110.30603 * 263.04014 * 15 14 13 25 25 H 1.09002 * 110.31190 * 140.87429 * 15 14 13 26 26 H 1.09003 * 109.92040 * 333.51097 * 16 12 11 27 27 H 1.09001 * 109.91499 * 94.80194 * 16 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2406 1.6176 0.0000 4 1 3.0943 1.6963 -1.2124 5 1 1.2756 2.7464 0.0006 6 1 3.0943 1.6962 1.2125 7 6 2.0078 -1.2150 0.0005 8 1 3.0878 -1.2150 0.0001 9 6 1.3074 -2.4279 -0.0048 10 7 1.8088 -3.6646 -0.0103 11 6 0.9481 -4.6459 -0.0151 12 7 1.3848 -5.9663 -0.0205 13 6 2.1568 -6.2765 1.2100 14 6 2.0939 -7.8226 1.2876 15 6 0.6618 -8.1354 0.7962 16 6 0.2404 -6.9031 -0.0247 17 7 -0.3382 -4.3694 -0.0139 18 16 -0.4503 -2.6725 0.0021 19 1 -0.4850 0.8401 0.0004 20 1 3.1882 -5.9379 1.1126 21 1 1.6844 -5.8279 2.0839 22 1 2.2327 -8.1633 2.3136 23 1 2.8351 -8.2751 0.6288 24 1 -0.0081 -8.2713 1.6452 25 1 0.6634 -9.0263 0.1682 26 1 -0.6282 -6.4305 0.4340 27 1 0.0077 -7.2004 -1.0473 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082387167.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:39 Heat of formation + Delta-G solvation = 40.047646 kcal Electronic energy + Delta-G solvation = -13156.193171 eV Core-core repulsion = 10847.051472 eV Total energy + Delta-G solvation = -2309.141699 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.063 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.20502 -36.64994 -34.40598 -31.35977 -29.53275 -28.46183 -27.27088 -23.11824 -21.24219 -20.31636 -18.70220 -17.62573 -16.43498 -15.47463 -15.31524 -15.17595 -13.93633 -13.54111 -13.18592 -12.53516 -12.18091 -11.95742 -11.69979 -11.60002 -11.44566 -11.02734 -10.81333 -10.71271 -10.32343 -10.05899 -9.91087 -9.28853 -8.64222 -8.41197 -7.71890 -7.28588 -6.99552 -5.16918 2.35193 2.82033 2.87474 2.95275 3.38089 3.53058 3.70535 4.01122 4.65571 4.88273 5.03472 5.12352 5.30066 5.72893 5.82596 6.02492 6.09298 6.21814 6.32774 6.39477 6.54728 6.59801 6.67454 7.05527 7.54214 7.67525 7.87665 8.09823 8.26512 9.54581 9.71522 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.060909 B = 0.007442 C = 0.006787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.589297 B = 3761.657790 C = 4124.472899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.748 5.748 2 C 0.055 3.945 3 Si 0.948 3.052 4 H -0.256 1.256 5 H -0.271 1.271 6 H -0.257 1.257 7 C -0.342 4.342 8 H 0.110 0.890 9 C 0.230 3.770 10 N -0.637 5.637 11 C 0.448 3.552 12 N -0.441 5.441 13 C 0.059 3.941 14 C -0.124 4.124 15 C -0.130 4.130 16 C 0.044 3.956 17 N -0.643 5.643 18 S 0.095 5.905 19 H 0.304 0.696 20 H 0.088 0.912 21 H 0.043 0.957 22 H 0.069 0.931 23 H 0.074 0.926 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.253 -3.344 2.380 4.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.375 5.375 2 C -0.172 4.172 3 Si 0.770 3.230 4 H -0.180 1.180 5 H -0.195 1.195 6 H -0.181 1.181 7 C -0.386 4.386 8 H 0.128 0.872 9 C -0.024 4.024 10 N -0.375 5.375 11 C 0.072 3.928 12 N -0.165 5.165 13 C -0.069 4.069 14 C -0.162 4.162 15 C -0.169 4.169 16 C -0.085 4.085 17 N -0.487 5.487 18 S 0.235 5.765 19 H 0.116 0.884 20 H 0.106 0.894 21 H 0.062 0.938 22 H 0.088 0.912 23 H 0.092 0.908 24 H 0.083 0.917 25 H 0.087 0.913 26 H 0.094 0.906 27 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.054 -3.551 1.906 4.166 hybrid contribution 0.621 0.640 0.490 1.018 sum 1.675 -2.911 2.397 4.126 Atomic orbital electron populations 1.69121 1.07981 1.31861 1.28531 1.26378 0.95283 1.03074 0.92473 0.85658 0.79576 0.77025 0.80732 1.18037 1.19531 1.18071 1.19036 0.96005 0.86857 1.36738 0.87194 1.24982 0.92456 0.92930 0.91987 1.67594 1.33986 0.97309 1.38575 1.21388 0.85617 0.90937 0.94872 1.61561 1.19565 0.99380 1.36037 1.23039 0.99352 0.94407 0.90082 1.22515 0.97124 0.95610 1.00956 1.22427 0.96675 0.98190 0.99581 1.22769 0.93729 0.91301 1.00698 1.77370 1.17737 1.09395 1.44150 1.85683 1.14157 0.99205 1.77473 0.88354 0.89399 0.93834 0.91198 0.90768 0.91718 0.91286 0.90585 0.90896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -17.46 10.96 55.57 0.61 -16.85 15 2 C 0.06 1.24 5.50 -17.28 -0.10 1.15 15 3 Si 0.95 16.29 29.56 -169.99 -5.03 11.27 15 4 H -0.26 -4.36 7.11 56.52 0.40 -3.96 15 5 H -0.27 -4.47 7.11 56.52 0.40 -4.07 15 6 H -0.26 -4.34 7.11 56.52 0.40 -3.94 15 7 C -0.34 -8.55 9.46 -38.13 -0.36 -8.91 15 8 H 0.11 2.58 7.85 -52.49 -0.41 2.17 15 9 C 0.23 6.39 7.46 -16.16 -0.12 6.27 15 10 N -0.64 -17.84 10.51 -14.47 -0.15 -18.00 15 11 C 0.45 11.97 6.85 -325.50 -2.23 9.74 15 12 N -0.44 -9.95 5.37 -174.37 -0.94 -10.88 15 13 C 0.06 1.13 6.35 -1.90 -0.01 1.12 15 14 C -0.12 -1.77 7.06 -24.87 -0.18 -1.95 15 15 C -0.13 -1.90 6.93 -25.39 -0.18 -2.08 15 16 C 0.04 0.84 6.36 -2.78 -0.02 0.83 15 17 N -0.64 -17.66 10.09 27.88 0.28 -17.38 15 18 S 0.09 2.60 21.37 -107.50 -2.30 0.30 15 19 H 0.30 6.24 8.29 -40.82 -0.34 5.90 15 20 H 0.09 1.67 8.14 -51.93 -0.42 1.24 15 21 H 0.04 0.88 8.00 -51.93 -0.42 0.46 15 22 H 0.07 0.84 8.14 -51.93 -0.42 0.42 15 23 H 0.07 0.99 8.14 -51.93 -0.42 0.56 15 24 H 0.06 0.87 8.14 -51.93 -0.42 0.45 15 25 H 0.07 0.86 8.14 -51.93 -0.42 0.44 15 26 H 0.08 1.64 6.54 -51.93 -0.34 1.30 15 27 H 0.07 1.37 8.14 -51.93 -0.42 0.95 15 LS Contribution 244.69 15.07 3.69 3.69 Total: -1.00 -29.90 244.69 -9.86 -39.76 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -2.84 Total: 1.93 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: -3.19 Total: 6.16 kcal Atomic # 7 Polarization: -62.91 SS G_CDS: -0.20 Total: -63.10 kcal Atomic # 14 Polarization: 16.29 SS G_CDS: -5.03 Total: 11.27 kcal Atomic # 16 Polarization: 2.60 SS G_CDS: -2.30 Total: 0.30 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -29.90 -9.86 -39.76 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082387167.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.804 kcal (2) G-P(sol) polarization free energy of solvation -29.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds