Wall clock time and date at job start Mon Mar 30 2020 03:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30644 * 1 3 3 Si 1.86794 * 120.00543 * 2 1 4 4 H 1.48491 * 109.47447 * 240.00204 * 3 2 1 5 5 H 1.48504 * 109.46883 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47066 * 119.99908 * 3 2 1 7 7 C 1.40292 * 119.99516 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99594 * 179.97438 * 7 2 1 9 9 C 1.40060 * 119.99809 * 0.27894 * 7 2 1 10 10 N 1.33456 * 127.92268 * 179.72173 * 9 7 2 11 11 C 1.30532 * 116.67112 * 180.02562 * 10 9 7 12 12 N 1.39074 * 120.44058 * 180.02562 * 11 10 9 13 13 C 1.48534 * 110.99602 * 62.60120 * 12 11 10 14 14 C 1.54940 * 103.22522 * 159.72243 * 13 12 11 15 15 C 1.54598 * 102.91959 * 322.58988 * 14 13 12 16 16 C 1.47895 * 111.00175 * 179.97438 * 12 11 10 17 17 N 1.31566 * 119.12353 * 359.97438 * 11 10 9 18 18 S 1.70058 * 105.91336 * 359.72792 * 17 11 10 19 19 H 0.97005 * 119.99573 * 359.97438 * 1 2 3 20 20 H 1.08993 * 110.67255 * 278.15659 * 13 12 11 21 21 H 1.09005 * 110.66807 * 41.29000 * 13 12 11 22 22 H 1.09000 * 110.72369 * 204.23239 * 14 13 12 23 23 H 1.08995 * 110.87687 * 81.01290 * 14 13 12 24 24 H 1.09003 * 110.30603 * 263.04014 * 15 14 13 25 25 H 1.09002 * 110.31190 * 140.87429 * 15 14 13 26 26 H 1.09003 * 109.92040 * 333.51097 * 16 12 11 27 27 H 1.09001 * 109.91499 * 94.80194 * 16 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2406 1.6176 0.0000 4 1 3.0943 1.6963 -1.2124 5 1 1.2756 2.7464 0.0006 6 1 3.0943 1.6962 1.2125 7 6 2.0078 -1.2150 0.0005 8 1 3.0878 -1.2150 0.0001 9 6 1.3074 -2.4279 -0.0048 10 7 1.8088 -3.6646 -0.0103 11 6 0.9481 -4.6459 -0.0151 12 7 1.3848 -5.9663 -0.0205 13 6 2.1568 -6.2765 1.2100 14 6 2.0939 -7.8226 1.2876 15 6 0.6618 -8.1354 0.7962 16 6 0.2404 -6.9031 -0.0247 17 7 -0.3382 -4.3694 -0.0139 18 16 -0.4503 -2.6725 0.0021 19 1 -0.4850 0.8401 0.0004 20 1 3.1882 -5.9379 1.1126 21 1 1.6844 -5.8279 2.0839 22 1 2.2327 -8.1633 2.3136 23 1 2.8351 -8.2751 0.6288 24 1 -0.0081 -8.2713 1.6452 25 1 0.6634 -9.0263 0.1682 26 1 -0.6282 -6.4305 0.4340 27 1 0.0077 -7.2004 -1.0473 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082387167.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:38 Heat of formation + Delta-G solvation = 20.613280 kcal Electronic energy + Delta-G solvation = -13157.035908 eV Core-core repulsion = 10847.051472 eV Total energy + Delta-G solvation = -2309.984436 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.063 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.95143 -38.39531 -36.25809 -33.07186 -31.26047 -30.07081 -29.11967 -24.90954 -22.87191 -21.67536 -20.51998 -19.62644 -18.30873 -17.15899 -17.02341 -16.72334 -15.67200 -15.16605 -14.74848 -14.02009 -13.85121 -13.60077 -13.51776 -13.16226 -12.96276 -12.33070 -12.20970 -12.06115 -11.98522 -11.58227 -11.52489 -11.22987 -10.62627 -10.29887 -9.78891 -9.09025 -8.97605 -7.19697 0.43178 1.34063 1.38615 1.51281 1.59737 1.75519 2.10405 2.16641 2.88451 3.03673 3.66446 3.80452 4.06960 4.29754 4.48667 4.55197 4.73042 4.83215 4.86735 4.93265 5.04652 5.10918 5.22151 5.40109 5.65111 5.81748 5.97557 6.18859 6.32854 7.67033 7.82395 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.060909 B = 0.007442 C = 0.006787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.589297 B = 3761.657790 C = 4124.472899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.018 3.982 3 Si 1.031 2.969 4 H -0.249 1.249 5 H -0.256 1.256 6 H -0.248 1.248 7 C -0.341 4.341 8 H 0.124 0.876 9 C 0.194 3.806 10 N -0.664 5.664 11 C 0.443 3.557 12 N -0.454 5.454 13 C 0.055 3.945 14 C -0.108 4.108 15 C -0.119 4.119 16 C 0.039 3.961 17 N -0.665 5.665 18 S 0.053 5.947 19 H 0.320 0.680 20 H 0.082 0.918 21 H 0.023 0.977 22 H 0.101 0.899 23 H 0.091 0.909 24 H 0.078 0.922 25 H 0.099 0.901 26 H 0.047 0.953 27 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.613 -2.963 2.769 5.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.208 4.208 3 Si 0.847 3.153 4 H -0.173 1.173 5 H -0.179 1.179 6 H -0.171 1.171 7 C -0.386 4.386 8 H 0.141 0.859 9 C -0.056 4.056 10 N -0.404 5.404 11 C 0.068 3.932 12 N -0.178 5.178 13 C -0.073 4.073 14 C -0.146 4.146 15 C -0.157 4.157 16 C -0.089 4.089 17 N -0.510 5.510 18 S 0.192 5.808 19 H 0.133 0.867 20 H 0.100 0.900 21 H 0.042 0.958 22 H 0.120 0.880 23 H 0.109 0.891 24 H 0.097 0.903 25 H 0.118 0.882 26 H 0.065 0.935 27 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.394 -3.205 2.301 4.615 hybrid contribution 0.215 0.624 0.348 0.747 sum 2.609 -2.581 2.649 4.527 Atomic orbital electron populations 1.69145 1.09769 1.34063 1.26187 1.27619 0.96039 1.06187 0.90923 0.84491 0.78231 0.71503 0.81125 1.17295 1.17900 1.17139 1.19677 0.96957 0.87244 1.34744 0.85858 1.25474 0.92421 0.93924 0.93821 1.67636 1.34472 0.97729 1.40589 1.21874 0.85438 0.92483 0.93414 1.61650 1.20799 0.97826 1.37562 1.23157 0.98090 0.98157 0.87862 1.22523 0.97298 0.91347 1.03393 1.22422 0.96881 0.96613 0.99760 1.22870 0.92013 0.92546 1.01460 1.77420 1.18290 1.08710 1.46580 1.85484 1.15150 1.00502 1.79696 0.86684 0.89961 0.95825 0.88014 0.89072 0.90345 0.88226 0.93461 0.90982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -35.36 10.96 21.89 0.24 -35.12 15 2 C 0.02 0.77 5.50 85.37 0.47 1.24 15 3 Si 1.03 31.04 29.56 68.60 2.03 33.07 15 4 H -0.25 -7.27 7.11 99.48 0.71 -6.56 15 5 H -0.26 -7.06 7.11 99.48 0.71 -6.35 15 6 H -0.25 -7.15 7.11 99.48 0.71 -6.44 15 7 C -0.34 -17.10 9.46 23.21 0.22 -16.88 15 8 H 0.12 5.71 7.85 -2.91 -0.02 5.68 15 9 C 0.19 11.07 7.46 84.89 0.63 11.70 15 10 N -0.66 -38.52 10.51 -199.70 -2.10 -40.62 15 11 C 0.44 24.58 6.85 262.43 1.80 26.37 15 12 N -0.45 -20.79 5.37 -705.57 -3.79 -24.58 15 13 C 0.05 2.07 6.35 86.65 0.55 2.62 15 14 C -0.11 -2.76 7.06 31.80 0.22 -2.54 15 15 C -0.12 -3.15 6.93 31.46 0.22 -2.93 15 16 C 0.04 1.53 6.36 86.43 0.55 2.08 15 17 N -0.66 -38.23 10.09 -65.71 -0.66 -38.89 15 18 S 0.05 3.02 21.37 -56.49 -1.21 1.81 15 19 H 0.32 12.70 8.29 -92.70 -0.77 11.94 15 20 H 0.08 3.14 8.14 -2.39 -0.02 3.12 15 21 H 0.02 0.97 8.00 -2.38 -0.02 0.95 15 22 H 0.10 2.03 8.14 -2.39 -0.02 2.01 15 23 H 0.09 2.08 8.14 -2.39 -0.02 2.06 15 24 H 0.08 1.89 8.14 -2.39 -0.02 1.87 15 25 H 0.10 2.09 8.14 -2.39 -0.02 2.07 15 26 H 0.05 2.11 6.54 -2.39 -0.02 2.09 15 27 H 0.07 2.73 8.14 -2.39 -0.02 2.71 15 Total: -1.00 -67.87 244.69 0.35 -67.52 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 1.18 Total: 15.15 kcal Atomic # 6 Polarization: 17.00 SS G_CDS: 4.66 Total: 21.67 kcal Atomic # 7 Polarization: -132.90 SS G_CDS: -6.31 Total: -139.21 kcal Atomic # 14 Polarization: 31.04 SS G_CDS: 2.03 Total: 33.07 kcal Atomic # 16 Polarization: 3.02 SS G_CDS: -1.21 Total: 1.81 kcal Total: -67.87 0.35 -67.52 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082387167.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.133 kcal (2) G-P(sol) polarization free energy of solvation -67.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds