Wall clock time and date at job start Mon Mar 30 2020 02:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30864 * 1 3 3 Si 1.86799 * 120.00100 * 2 1 4 4 H 1.48501 * 109.47161 * 85.01560 * 3 2 1 5 5 H 1.48497 * 109.46975 * 205.01509 * 3 2 1 6 6 H 1.48501 * 109.47010 * 325.01811 * 3 2 1 7 7 C 1.40078 * 120.00075 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00043 * 187.64467 * 7 2 1 9 9 C 1.40039 * 119.99629 * 7.64058 * 7 2 1 10 10 C 1.38594 * 126.25309 * 187.59443 * 9 7 2 11 11 N 1.30669 * 113.55183 * 180.02562 * 10 9 7 12 12 C 1.29527 * 117.63391 * 0.02562 * 11 10 9 13 13 C 1.50698 * 124.56502 * 180.02562 * 12 11 10 14 14 H 1.08998 * 110.33220 * 197.22206 * 13 12 11 15 15 C 1.54481 * 110.37118 * 74.96994 * 13 12 11 16 16 C 1.54510 * 104.06486 * 217.19047 * 15 13 12 17 17 C 1.54476 * 104.06058 * 0.02562 * 16 15 13 18 18 O 1.44424 * 110.37082 * 319.59169 * 13 12 11 19 19 S 1.70887 * 110.87208 * 359.71710 * 12 11 10 20 20 H 0.96995 * 119.99929 * 0.02562 * 1 2 3 21 21 H 1.07998 * 123.21905 * 0.02562 * 10 9 7 22 22 H 1.09003 * 110.51509 * 335.83912 * 15 13 12 23 23 H 1.09005 * 110.50971 * 98.40566 * 15 13 12 24 24 H 1.09002 * 110.51087 * 118.64622 * 16 15 13 25 25 H 1.08997 * 110.51202 * 241.21987 * 16 15 13 26 26 H 1.08994 * 110.37528 * 142.80859 * 17 16 15 27 27 H 1.09003 * 110.37350 * 265.03764 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.3848 2.1072 1.3948 5 1 3.5889 1.4120 -0.5920 6 1 1.4967 2.6200 -0.8027 7 6 2.0090 -1.2131 0.0005 8 1 3.0818 -1.2172 0.1250 9 6 1.3181 -2.4205 -0.1602 10 6 1.8519 -3.6933 -0.0339 11 7 0.9819 -4.6469 -0.2374 12 6 -0.2331 -4.3007 -0.5233 13 6 -1.3583 -5.2680 -0.7862 14 1 -2.1817 -4.7630 -1.2912 15 6 -1.8451 -5.8991 0.5372 16 6 -2.1745 -7.3601 0.1576 17 6 -1.8471 -7.4391 -1.3500 18 8 -0.8891 -6.3825 -1.5758 19 16 -0.3901 -2.5993 -0.5540 20 1 -0.4850 0.8400 -0.0004 21 1 2.8876 -3.8791 0.2093 22 1 -1.0557 -5.8682 1.2882 23 1 -2.7360 -5.3863 0.8998 24 1 -1.5479 -8.0517 0.7209 25 1 -3.2291 -7.5720 0.3335 26 1 -1.4092 -8.4072 -1.5931 27 1 -2.7461 -7.2706 -1.9429 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082416825.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:15 Heat of formation + Delta-G solvation = -32.401602 kcal Electronic energy + Delta-G solvation = -13044.671945 eV Core-core repulsion = 10700.095860 eV Total energy + Delta-G solvation = -2344.576085 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.81710 -37.08773 -34.24578 -31.54004 -30.28547 -28.55993 -25.05126 -23.31102 -21.62280 -20.64026 -18.71459 -17.63759 -16.17975 -15.64293 -15.36453 -14.63517 -14.31087 -13.45971 -13.22877 -12.73278 -12.44260 -11.97424 -11.86038 -11.51940 -11.28968 -11.16171 -10.86022 -10.72883 -10.45959 -10.21247 -9.79282 -9.39367 -9.19911 -7.84438 -7.73636 -7.31967 -6.97714 -4.62533 2.43464 2.87845 2.93414 3.00517 3.34053 3.61688 3.92509 4.19631 4.69095 5.06757 5.08736 5.23153 5.41109 5.65715 5.75386 5.98015 6.00913 6.09848 6.22184 6.35451 6.70938 6.73081 6.96398 7.16902 7.48871 7.67857 7.90842 8.31448 8.31702 9.72082 9.80523 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.072664 B = 0.007023 C = 0.006733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 385.242625 B = 3985.896165 C = 4157.884242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.051 3.949 3 Si 0.935 3.065 4 H -0.265 1.265 5 H -0.256 1.256 6 H -0.271 1.271 7 C -0.373 4.373 8 H 0.099 0.901 9 C 0.005 3.995 10 C -0.174 4.174 11 N -0.408 5.408 12 C -0.185 4.185 13 C 0.189 3.811 14 H 0.063 0.937 15 C -0.140 4.140 16 C -0.153 4.153 17 C 0.042 3.958 18 O -0.358 6.358 19 S 0.118 5.882 20 H 0.297 0.703 21 H 0.138 0.862 22 H 0.077 0.923 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.083 0.917 27 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.594 -2.442 0.149 5.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.171 4.171 3 Si 0.758 3.242 4 H -0.190 1.190 5 H -0.180 1.180 6 H -0.196 1.196 7 C -0.411 4.411 8 H 0.117 0.883 9 C -0.118 4.118 10 C -0.329 4.329 11 N -0.120 5.120 12 C -0.453 4.453 13 C 0.128 3.872 14 H 0.081 0.919 15 C -0.179 4.179 16 C -0.191 4.191 17 C -0.036 4.036 18 O -0.276 6.276 19 S 0.369 5.631 20 H 0.110 0.890 21 H 0.155 0.845 22 H 0.096 0.904 23 H 0.088 0.912 24 H 0.088 0.912 25 H 0.087 0.913 26 H 0.101 0.899 27 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.412 -2.344 -0.171 5.900 hybrid contribution 1.104 0.545 0.393 1.292 sum -4.308 -1.798 0.221 4.674 Atomic orbital electron populations 1.69132 1.07711 1.30857 1.32048 1.26254 0.95209 1.02760 0.92871 0.85799 0.80298 0.78591 0.79464 1.19012 1.17981 1.19564 1.19185 0.96062 0.88702 1.37145 0.88266 1.23340 0.94156 0.97214 0.97120 1.21481 0.99480 0.86438 1.25531 1.65085 1.00778 1.38154 1.07993 1.25383 0.96180 0.97756 1.25949 1.20772 0.91739 0.85512 0.89160 0.91948 1.22960 1.01395 0.94240 0.99337 1.22911 1.01141 0.97910 0.97112 1.23293 0.92962 0.92587 0.94782 1.89281 1.47438 1.22738 1.68170 1.83784 1.10513 0.98623 1.70171 0.89045 0.84457 0.90383 0.91205 0.91159 0.91305 0.89917 0.93099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.40 10.90 55.56 0.61 -17.79 15 2 C 0.05 1.19 5.48 -17.27 -0.09 1.09 15 3 Si 0.94 17.14 29.57 -169.99 -5.03 12.12 15 4 H -0.27 -4.78 7.11 56.52 0.40 -4.37 15 5 H -0.26 -4.65 7.11 56.52 0.40 -4.25 15 6 H -0.27 -4.84 7.11 56.52 0.40 -4.44 15 7 C -0.37 -9.43 9.32 -38.22 -0.36 -9.79 15 8 H 0.10 2.34 7.86 -52.49 -0.41 1.93 15 9 C 0.01 0.14 6.21 -38.78 -0.24 -0.10 15 10 C -0.17 -4.73 11.46 -17.91 -0.21 -4.94 15 11 N -0.41 -11.18 10.44 -10.84 -0.11 -11.30 15 12 C -0.18 -4.70 6.22 -13.25 -0.08 -4.79 15 13 C 0.19 4.03 3.80 -27.11 -0.10 3.92 15 14 H 0.06 1.24 8.14 -51.93 -0.42 0.82 15 15 C -0.14 -2.53 6.62 -25.16 -0.17 -2.70 15 16 C -0.15 -2.24 7.09 -25.16 -0.18 -2.41 15 17 C 0.04 0.65 7.63 37.93 0.29 0.94 15 18 O -0.36 -7.73 11.29 -35.23 -0.40 -8.13 15 19 S 0.12 3.01 20.37 -107.50 -2.19 0.82 15 20 H 0.30 6.31 8.30 -40.82 -0.34 5.97 15 21 H 0.14 3.49 8.06 -52.49 -0.42 3.06 15 22 H 0.08 1.57 7.87 -51.93 -0.41 1.17 15 23 H 0.07 1.11 8.14 -51.93 -0.42 0.68 15 24 H 0.07 0.99 8.14 -51.93 -0.42 0.57 15 25 H 0.07 0.81 8.14 -51.93 -0.42 0.39 15 26 H 0.08 1.14 8.14 -51.93 -0.42 0.71 15 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 15 LS Contribution 248.65 15.07 3.75 3.75 Total: -1.00 -29.36 248.65 -7.43 -36.79 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -2.91 Total: 2.50 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: -1.14 Total: -18.77 kcal Atomic # 7 Polarization: -29.58 SS G_CDS: 0.49 Total: -29.09 kcal Atomic # 8 Polarization: -7.73 SS G_CDS: -0.40 Total: -8.13 kcal Atomic # 14 Polarization: 17.14 SS G_CDS: -5.03 Total: 12.12 kcal Atomic # 16 Polarization: 3.01 SS G_CDS: -2.19 Total: 0.82 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -29.36 -7.43 -36.79 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082416825.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.389 kcal (2) G-P(sol) polarization free energy of solvation -29.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds