Wall clock time and date at job start Mon Mar 30 2020 02:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30864 * 1 3 3 Si 1.86799 * 120.00100 * 2 1 4 4 H 1.48501 * 109.47161 * 85.01560 * 3 2 1 5 5 H 1.48497 * 109.46975 * 205.01509 * 3 2 1 6 6 H 1.48501 * 109.47010 * 325.01811 * 3 2 1 7 7 C 1.40078 * 120.00075 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00043 * 187.64467 * 7 2 1 9 9 C 1.40039 * 119.99629 * 7.64058 * 7 2 1 10 10 C 1.38594 * 126.25309 * 187.59443 * 9 7 2 11 11 N 1.30669 * 113.55183 * 180.02562 * 10 9 7 12 12 C 1.29527 * 117.63391 * 0.02562 * 11 10 9 13 13 C 1.50698 * 124.56502 * 180.02562 * 12 11 10 14 14 H 1.08998 * 110.33220 * 197.22206 * 13 12 11 15 15 C 1.54481 * 110.37118 * 74.96994 * 13 12 11 16 16 C 1.54510 * 104.06486 * 217.19047 * 15 13 12 17 17 C 1.54476 * 104.06058 * 0.02562 * 16 15 13 18 18 O 1.44424 * 110.37082 * 319.59169 * 13 12 11 19 19 S 1.70887 * 110.87208 * 359.71710 * 12 11 10 20 20 H 0.96995 * 119.99929 * 0.02562 * 1 2 3 21 21 H 1.07998 * 123.21905 * 0.02562 * 10 9 7 22 22 H 1.09003 * 110.51509 * 335.83912 * 15 13 12 23 23 H 1.09005 * 110.50971 * 98.40566 * 15 13 12 24 24 H 1.09002 * 110.51087 * 118.64622 * 16 15 13 25 25 H 1.08997 * 110.51202 * 241.21987 * 16 15 13 26 26 H 1.08994 * 110.37528 * 142.80859 * 17 16 15 27 27 H 1.09003 * 110.37350 * 265.03764 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.3848 2.1072 1.3948 5 1 3.5889 1.4120 -0.5920 6 1 1.4967 2.6200 -0.8027 7 6 2.0090 -1.2131 0.0005 8 1 3.0818 -1.2172 0.1250 9 6 1.3181 -2.4205 -0.1602 10 6 1.8519 -3.6933 -0.0339 11 7 0.9819 -4.6469 -0.2374 12 6 -0.2331 -4.3007 -0.5233 13 6 -1.3583 -5.2680 -0.7862 14 1 -2.1817 -4.7630 -1.2912 15 6 -1.8451 -5.8991 0.5372 16 6 -2.1745 -7.3601 0.1576 17 6 -1.8471 -7.4391 -1.3500 18 8 -0.8891 -6.3825 -1.5758 19 16 -0.3901 -2.5993 -0.5540 20 1 -0.4850 0.8400 -0.0004 21 1 2.8876 -3.8791 0.2093 22 1 -1.0557 -5.8682 1.2882 23 1 -2.7360 -5.3863 0.8998 24 1 -1.5479 -8.0517 0.7209 25 1 -3.2291 -7.5720 0.3335 26 1 -1.4092 -8.4072 -1.5931 27 1 -2.7461 -7.2706 -1.9429 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082416825.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:14 Heat of formation + Delta-G solvation = -51.655712 kcal Electronic energy + Delta-G solvation = -13045.506866 eV Core-core repulsion = 10700.095860 eV Total energy + Delta-G solvation = -2345.411006 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.36091 -38.98771 -36.11278 -32.97829 -32.02717 -30.26641 -26.82692 -25.07805 -23.25316 -22.05758 -20.61447 -19.51022 -17.90001 -17.32338 -16.85856 -16.24292 -15.85366 -15.15335 -14.72029 -14.47583 -14.26299 -13.69079 -13.61323 -13.09098 -12.97587 -12.57596 -12.28999 -12.14350 -12.00082 -11.52239 -11.48350 -11.40240 -10.68761 -9.84059 -9.71815 -9.27762 -8.85219 -6.58820 0.57204 1.36267 1.37391 1.51406 1.57038 1.87607 2.14555 2.32811 3.01031 3.35828 3.70176 3.93692 4.02384 4.23521 4.34272 4.48576 4.76350 4.88252 4.89122 4.94277 5.01671 5.15321 5.19417 5.26520 5.73823 5.96620 6.05890 6.32959 6.40786 7.79783 7.95727 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.072664 B = 0.007023 C = 0.006733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 385.242625 B = 3985.896165 C = 4157.884242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.015 3.985 3 Si 1.015 2.985 4 H -0.255 1.255 5 H -0.253 1.253 6 H -0.259 1.259 7 C -0.394 4.394 8 H 0.108 0.892 9 C -0.023 4.023 10 C -0.213 4.213 11 N -0.433 5.433 12 C -0.189 4.189 13 C 0.181 3.819 14 H 0.076 0.924 15 C -0.138 4.138 16 C -0.142 4.142 17 C 0.033 3.967 18 O -0.396 6.396 19 S 0.112 5.888 20 H 0.311 0.689 21 H 0.140 0.860 22 H 0.047 0.953 23 H 0.092 0.908 24 H 0.072 0.928 25 H 0.107 0.893 26 H 0.100 0.900 27 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.622 -1.653 0.166 5.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.206 4.206 3 Si 0.833 3.167 4 H -0.180 1.180 5 H -0.177 1.177 6 H -0.183 1.183 7 C -0.430 4.430 8 H 0.126 0.874 9 C -0.146 4.146 10 C -0.366 4.366 11 N -0.145 5.145 12 C -0.458 4.458 13 C 0.120 3.880 14 H 0.094 0.906 15 C -0.177 4.177 16 C -0.179 4.179 17 C -0.043 4.043 18 O -0.316 6.316 19 S 0.363 5.637 20 H 0.124 0.876 21 H 0.157 0.843 22 H 0.066 0.934 23 H 0.111 0.889 24 H 0.091 0.909 25 H 0.125 0.875 26 H 0.118 0.882 27 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.450 -1.587 -0.149 6.644 hybrid contribution 1.361 0.314 0.376 1.446 sum -5.089 -1.273 0.227 5.251 Atomic orbital electron populations 1.69133 1.09182 1.32835 1.30469 1.27309 0.96015 1.05875 0.91369 0.84656 0.78763 0.73352 0.79977 1.17974 1.17673 1.18265 1.19630 0.96831 0.89306 1.37271 0.87403 1.23668 0.95142 0.97864 0.97968 1.21616 0.99987 0.86997 1.27997 1.65097 1.01681 1.38598 1.09168 1.26150 0.96630 0.98639 1.24372 1.20959 0.90388 0.85470 0.91164 0.90623 1.22905 1.01140 0.96827 0.96798 1.22900 1.03587 0.95255 0.96180 1.23646 0.93048 0.91720 0.95917 1.89218 1.49786 1.24052 1.68543 1.83515 1.10088 0.99212 1.70878 0.87566 0.84262 0.93428 0.88945 0.90923 0.87453 0.88175 0.90563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -37.08 10.90 21.86 0.24 -36.84 15 2 C 0.01 0.67 5.48 85.28 0.47 1.13 15 3 Si 1.01 33.50 29.57 68.60 2.03 35.53 15 4 H -0.26 -8.05 7.11 99.48 0.71 -7.35 15 5 H -0.25 -8.22 7.11 99.48 0.71 -7.51 15 6 H -0.26 -8.02 7.11 99.48 0.71 -7.31 15 7 C -0.39 -20.07 9.32 23.15 0.22 -19.85 15 8 H 0.11 5.13 7.86 -2.91 -0.02 5.11 15 9 C -0.02 -1.28 6.21 22.79 0.14 -1.14 15 10 C -0.21 -12.08 11.46 84.95 0.97 -11.11 15 11 N -0.43 -24.62 10.44 -188.21 -1.96 -26.59 15 12 C -0.19 -9.82 6.22 88.45 0.55 -9.27 15 13 C 0.18 7.66 3.80 30.35 0.12 7.78 15 14 H 0.08 2.94 8.14 -2.39 -0.02 2.92 15 15 C -0.14 -4.81 6.62 31.61 0.21 -4.60 15 16 C -0.14 -3.75 7.09 31.61 0.22 -3.52 15 17 C 0.03 0.96 7.63 72.48 0.55 1.51 15 18 O -0.40 -16.95 11.29 -148.98 -1.68 -18.63 15 19 S 0.11 5.83 20.37 -56.49 -1.15 4.68 15 20 H 0.31 12.74 8.30 -92.71 -0.77 11.97 15 21 H 0.14 7.48 8.06 -2.91 -0.02 7.46 15 22 H 0.05 1.93 7.87 -2.39 -0.02 1.91 15 23 H 0.09 2.75 8.14 -2.38 -0.02 2.73 15 24 H 0.07 1.89 8.14 -2.39 -0.02 1.87 15 25 H 0.11 2.05 8.14 -2.39 -0.02 2.03 15 26 H 0.10 2.50 8.14 -2.39 -0.02 2.48 15 27 H 0.08 1.81 8.14 -2.39 -0.02 1.79 15 Total: -1.00 -64.91 248.65 2.09 -62.82 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: 1.17 Total: 18.11 kcal Atomic # 6 Polarization: -42.52 SS G_CDS: 3.45 Total: -39.07 kcal Atomic # 7 Polarization: -61.70 SS G_CDS: -1.73 Total: -63.43 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -1.68 Total: -18.63 kcal Atomic # 14 Polarization: 33.50 SS G_CDS: 2.03 Total: 35.53 kcal Atomic # 16 Polarization: 5.83 SS G_CDS: -1.15 Total: 4.68 kcal Total: -64.91 2.09 -62.82 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082416825.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.165 kcal (2) G-P(sol) polarization free energy of solvation -64.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds