Wall clock time and date at job start Mon Mar 30 2020 02:56:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30859 * 1
3 3 Si 1.86799 * 120.00240 * 2 1
4 4 H 1.48506 * 109.46718 * 0.02562 * 3 2 1
5 5 H 1.48499 * 109.47104 * 120.00085 * 3 2 1
6 6 H 1.48499 * 109.46949 * 240.00362 * 3 2 1
7 7 C 1.40077 * 119.99852 * 180.02562 * 2 1 3
8 8 H 1.07998 * 120.00140 * 157.28209 * 7 2 1
9 9 C 1.40040 * 119.99827 * 337.27396 * 7 2 1
10 10 C 1.38590 * 126.25466 * 340.05956 * 9 7 2
11 11 N 1.30681 * 113.54811 * 179.78408 * 10 9 7
12 12 C 1.29527 * 117.63261 * 0.52625 * 11 10 9
13 13 C 1.50698 * 124.56403 * 179.72071 * 12 11 10
14 14 H 1.09000 * 109.87231 * 164.27747 * 13 12 11
15 15 C 1.54102 * 109.87813 * 285.28843 * 13 12 11
16 16 C 1.54809 * 104.19225 * 121.45153 * 15 13 12
17 17 C 1.55004 * 102.08875 * 20.87868 * 16 15 13
18 18 O 1.43750 * 109.87637 * 43.26973 * 13 12 11
19 19 S 1.70881 * 110.87430 * 359.70476 * 12 11 10
20 20 H 0.97005 * 120.00362 * 173.87926 * 1 2 3
21 21 H 1.07996 * 123.22599 * 359.97438 * 10 9 7
22 22 H 1.09003 * 110.48213 * 240.12926 * 15 13 12
23 23 H 1.09000 * 110.48776 * 2.77018 * 15 13 12
24 24 H 1.08997 * 110.90675 * 139.07602 * 16 15 13
25 25 H 1.09000 * 110.90776 * 262.65044 * 16 15 13
26 26 H 1.08998 * 110.61989 * 81.47777 * 17 16 15
27 27 H 1.08993 * 110.61363 * 204.47776 * 17 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3086 0.0000 0.0000
3 14 2.2426 1.6177 0.0000
4 1 1.2776 2.7464 0.0006
5 1 3.0964 1.6963 1.2125
6 1 3.0963 1.6963 -1.2125
7 6 2.0089 -1.2131 -0.0005
8 1 3.0261 -1.2493 -0.3618
9 6 1.3902 -2.3790 0.4675
10 6 0.2811 -2.4422 1.2961
11 7 -0.0927 -3.6628 1.5759
12 6 0.6004 -4.6338 1.0715
13 6 0.3132 -6.0960 1.2963
14 1 0.8482 -6.6961 0.5603
15 6 0.7460 -6.5024 2.7184
16 6 -0.5511 -7.0393 3.3710
17 6 -1.4171 -7.3876 2.1335
18 8 -1.0998 -6.3384 1.1908
19 16 1.8842 -4.0338 0.1166
20 1 -0.4851 -0.8353 -0.0896
21 1 -0.2274 -1.5668 1.6720
22 1 1.5044 -7.2843 2.6774
23 1 1.1185 -5.6367 3.2659
24 1 -0.3474 -7.9294 3.9662
25 1 -1.0292 -6.2695 3.9767
26 1 -1.1366 -8.3607 1.7303
27 1 -2.4765 -7.3675 2.3885
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000082416826.mol2 27
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:56:17
Heat of formation + Delta-G solvation = -50.841737 kcal
Electronic energy + Delta-G solvation = -13094.527198 eV
Core-core repulsion = 10749.151488 eV
Total energy + Delta-G solvation = -2345.375709 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 225.056 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-40.54331 -39.32930 -36.30341 -33.06098 -31.80122 -30.15861 -26.94847 -25.13912
-23.36549 -22.27744 -21.13098 -19.56113 -18.38062 -17.17448 -16.94480 -16.09414
-15.72315 -15.50415 -14.87904 -14.53866 -14.44033 -14.14182 -13.86105 -12.97106
-12.62777 -12.45312 -12.15806 -12.08856 -11.95775 -11.83965 -11.66039 -11.23140
-10.72837 -10.14454 -10.07119 -9.55064 -9.39569 -6.71529 0.36208 1.04846
1.43794 1.50610 1.61297 1.82028 2.22458 2.29931 2.81515 3.21858
3.56604 3.86446 3.93298 4.10573 4.27865 4.43376 4.73958 4.80959
4.85482 4.87186 4.91764 5.08136 5.23093 5.28336 5.52708 5.64878
6.02076 6.09868 6.36662 7.57151 7.69245
Molecular weight = 225.06amu
Principal moments of inertia in cm(-1)
A = 0.063197 B = 0.006995 C = 0.006724
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 442.950271 B = 4002.075596 C = 4163.299817
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.779 5.779
2 C 0.003 3.997
3 Si 1.130 2.870
4 H -0.268 1.268
5 H -0.257 1.257
6 H -0.245 1.245
7 C -0.445 4.445
8 H 0.102 0.898
9 C -0.016 4.016
10 C -0.209 4.209
11 N -0.419 5.419
12 C -0.133 4.133
13 C 0.181 3.819
14 H 0.080 0.920
15 C -0.137 4.137
16 C -0.142 4.142
17 C 0.038 3.962
18 O -0.398 6.398
19 S -0.020 6.020
20 H 0.292 0.708
21 H 0.132 0.868
22 H 0.104 0.896
23 H 0.052 0.948
24 H 0.114 0.886
25 H 0.058 0.942
26 H 0.085 0.915
27 H 0.099 0.901
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.521 -7.410 2.650 8.621
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.400 5.400
2 C -0.220 4.220
3 Si 0.943 3.057
4 H -0.193 1.193
5 H -0.182 1.182
6 H -0.169 1.169
7 C -0.482 4.482
8 H 0.120 0.880
9 C -0.138 4.138
10 C -0.361 4.361
11 N -0.131 5.131
12 C -0.404 4.404
13 C 0.120 3.880
14 H 0.097 0.903
15 C -0.176 4.176
16 C -0.180 4.180
17 C -0.038 4.038
18 O -0.318 6.318
19 S 0.232 5.768
20 H 0.106 0.894
21 H 0.149 0.851
22 H 0.123 0.877
23 H 0.071 0.929
24 H 0.132 0.868
25 H 0.076 0.924
26 H 0.103 0.897
27 H 0.117 0.883
Dipole moment (debyes) X Y Z Total
from point charges 3.334 -6.492 2.382 7.677
hybrid contribution -0.558 -0.895 0.326 1.104
sum 2.776 -7.388 2.708 8.344
Atomic orbital electron populations
1.70506 1.09293 1.34508 1.25706 1.29135 0.95515 1.07596 0.89707
0.82874 0.74653 0.68190 0.79933 1.19261 1.18167 1.16857 1.20527
1.01970 0.92585 1.33144 0.87964 1.23575 0.97269 0.95705 0.97270
1.21498 1.07189 0.93125 1.14288 1.65054 1.27802 0.99769 1.20463
1.25673 1.02460 0.98499 1.13758 1.20815 0.82480 0.86914 0.97809
0.90252 1.22940 0.99469 1.01264 0.93876 1.23066 0.94705 1.02089
0.98113 1.23842 1.00911 0.91027 0.88015 1.88991 1.23721 1.57316
1.61734 1.82708 1.37483 1.02069 1.54573 0.89430 0.85064 0.87747
0.92925 0.86756 0.92351 0.89730 0.88323
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.78 -41.03 12.54 21.86 0.27 -40.75 15
2 C 0.00 0.15 5.26 85.28 0.45 0.60 15
3 Si 1.13 38.68 29.99 68.60 2.06 40.74 15
4 H -0.27 -9.15 7.11 99.48 0.71 -8.44 15
5 H -0.26 -8.29 7.11 99.48 0.71 -7.58 15
6 H -0.25 -7.39 7.11 99.48 0.71 -6.68 15
7 C -0.44 -22.69 9.33 23.15 0.22 -22.48 15
8 H 0.10 4.80 7.94 -2.91 -0.02 4.78 15
9 C -0.02 -0.90 5.93 22.79 0.14 -0.76 15
10 C -0.21 -12.04 9.54 84.95 0.81 -11.23 15
11 N -0.42 -23.46 10.45 -188.21 -1.97 -25.43 15
12 C -0.13 -6.62 6.06 88.45 0.54 -6.09 15
13 C 0.18 7.18 3.92 30.22 0.12 7.30 15
14 H 0.08 2.85 8.14 -2.39 -0.02 2.83 15
15 C -0.14 -4.34 6.63 31.58 0.21 -4.13 15
16 C -0.14 -3.75 7.16 31.90 0.23 -3.52 15
17 C 0.04 1.05 7.72 72.67 0.56 1.61 15
18 O -0.40 -16.28 11.16 -148.98 -1.66 -17.95 15
19 S -0.02 -0.97 23.13 -56.49 -1.31 -2.27 15
20 H 0.29 16.59 6.24 -92.70 -0.58 16.01 15
21 H 0.13 7.83 6.66 -2.91 -0.02 7.81 15
22 H 0.10 2.54 8.14 -2.39 -0.02 2.52 15
23 H 0.05 1.95 7.69 -2.39 -0.02 1.94 15
24 H 0.11 2.07 8.14 -2.39 -0.02 2.05 15
25 H 0.06 1.74 8.14 -2.39 -0.02 1.72 15
26 H 0.08 1.83 8.14 -2.39 -0.02 1.81 15
27 H 0.10 2.44 8.14 -2.39 -0.02 2.42 15
Total: -1.00 -65.19 247.53 2.02 -63.16
By element:
Atomic # 1 Polarization: 19.81 SS G_CDS: 1.36 Total: 21.18 kcal
Atomic # 6 Polarization: -41.95 SS G_CDS: 3.26 Total: -38.69 kcal
Atomic # 7 Polarization: -64.49 SS G_CDS: -1.69 Total: -66.18 kcal
Atomic # 8 Polarization: -16.28 SS G_CDS: -1.66 Total: -17.95 kcal
Atomic # 14 Polarization: 38.68 SS G_CDS: 2.06 Total: 40.74 kcal
Atomic # 16 Polarization: -0.97 SS G_CDS: -1.31 Total: -2.27 kcal
Total: -65.19 2.02 -63.16 kcal
The number of atoms in the molecule is 27
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000082416826.mol2 27
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 12.322 kcal
(2) G-P(sol) polarization free energy of solvation -65.187 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.865 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.023 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.164 kcal
(6) G-S(sol) free energy of system = (1) + (5) -50.842 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds