Wall clock time and date at job start Mon Mar 30 2020 02:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30859 * 1 3 3 Si 1.86799 * 120.00240 * 2 1 4 4 H 1.48506 * 109.46718 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.47104 * 120.00085 * 3 2 1 6 6 H 1.48499 * 109.46949 * 240.00362 * 3 2 1 7 7 C 1.40077 * 119.99852 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00140 * 157.28209 * 7 2 1 9 9 C 1.40040 * 119.99827 * 337.27396 * 7 2 1 10 10 C 1.38590 * 126.25466 * 340.05956 * 9 7 2 11 11 N 1.30681 * 113.54811 * 179.78408 * 10 9 7 12 12 C 1.29527 * 117.63261 * 0.52625 * 11 10 9 13 13 C 1.50698 * 124.56403 * 179.72071 * 12 11 10 14 14 H 1.09000 * 109.87231 * 164.27747 * 13 12 11 15 15 C 1.54102 * 109.87813 * 285.28843 * 13 12 11 16 16 C 1.54809 * 104.19225 * 121.45153 * 15 13 12 17 17 C 1.55004 * 102.08875 * 20.87868 * 16 15 13 18 18 O 1.43750 * 109.87637 * 43.26973 * 13 12 11 19 19 S 1.70881 * 110.87430 * 359.70476 * 12 11 10 20 20 H 0.97005 * 120.00362 * 173.87926 * 1 2 3 21 21 H 1.07996 * 123.22599 * 359.97438 * 10 9 7 22 22 H 1.09003 * 110.48213 * 240.12926 * 15 13 12 23 23 H 1.09000 * 110.48776 * 2.77018 * 15 13 12 24 24 H 1.08997 * 110.90675 * 139.07602 * 16 15 13 25 25 H 1.09000 * 110.90776 * 262.65044 * 16 15 13 26 26 H 1.08998 * 110.61989 * 81.47777 * 17 16 15 27 27 H 1.08993 * 110.61363 * 204.47776 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 1.2776 2.7464 0.0006 5 1 3.0964 1.6963 1.2125 6 1 3.0963 1.6963 -1.2125 7 6 2.0089 -1.2131 -0.0005 8 1 3.0261 -1.2493 -0.3618 9 6 1.3902 -2.3790 0.4675 10 6 0.2811 -2.4422 1.2961 11 7 -0.0927 -3.6628 1.5759 12 6 0.6004 -4.6338 1.0715 13 6 0.3132 -6.0960 1.2963 14 1 0.8482 -6.6961 0.5603 15 6 0.7460 -6.5024 2.7184 16 6 -0.5511 -7.0393 3.3710 17 6 -1.4171 -7.3876 2.1335 18 8 -1.0998 -6.3384 1.1908 19 16 1.8842 -4.0338 0.1166 20 1 -0.4851 -0.8353 -0.0896 21 1 -0.2274 -1.5668 1.6720 22 1 1.5044 -7.2843 2.6774 23 1 1.1185 -5.6367 3.2659 24 1 -0.3474 -7.9294 3.9662 25 1 -1.0292 -6.2695 3.9767 26 1 -1.1366 -8.3607 1.7303 27 1 -2.4765 -7.3675 2.3885 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082416826.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:17 Heat of formation + Delta-G solvation = -50.841737 kcal Electronic energy + Delta-G solvation = -13094.527198 eV Core-core repulsion = 10749.151488 eV Total energy + Delta-G solvation = -2345.375709 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.54331 -39.32930 -36.30341 -33.06098 -31.80122 -30.15861 -26.94847 -25.13912 -23.36549 -22.27744 -21.13098 -19.56113 -18.38062 -17.17448 -16.94480 -16.09414 -15.72315 -15.50415 -14.87904 -14.53866 -14.44033 -14.14182 -13.86105 -12.97106 -12.62777 -12.45312 -12.15806 -12.08856 -11.95775 -11.83965 -11.66039 -11.23140 -10.72837 -10.14454 -10.07119 -9.55064 -9.39569 -6.71529 0.36208 1.04846 1.43794 1.50610 1.61297 1.82028 2.22458 2.29931 2.81515 3.21858 3.56604 3.86446 3.93298 4.10573 4.27865 4.43376 4.73958 4.80959 4.85482 4.87186 4.91764 5.08136 5.23093 5.28336 5.52708 5.64878 6.02076 6.09868 6.36662 7.57151 7.69245 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.063197 B = 0.006995 C = 0.006724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.950271 B = 4002.075596 C = 4163.299817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.003 3.997 3 Si 1.130 2.870 4 H -0.268 1.268 5 H -0.257 1.257 6 H -0.245 1.245 7 C -0.445 4.445 8 H 0.102 0.898 9 C -0.016 4.016 10 C -0.209 4.209 11 N -0.419 5.419 12 C -0.133 4.133 13 C 0.181 3.819 14 H 0.080 0.920 15 C -0.137 4.137 16 C -0.142 4.142 17 C 0.038 3.962 18 O -0.398 6.398 19 S -0.020 6.020 20 H 0.292 0.708 21 H 0.132 0.868 22 H 0.104 0.896 23 H 0.052 0.948 24 H 0.114 0.886 25 H 0.058 0.942 26 H 0.085 0.915 27 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.521 -7.410 2.650 8.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.220 4.220 3 Si 0.943 3.057 4 H -0.193 1.193 5 H -0.182 1.182 6 H -0.169 1.169 7 C -0.482 4.482 8 H 0.120 0.880 9 C -0.138 4.138 10 C -0.361 4.361 11 N -0.131 5.131 12 C -0.404 4.404 13 C 0.120 3.880 14 H 0.097 0.903 15 C -0.176 4.176 16 C -0.180 4.180 17 C -0.038 4.038 18 O -0.318 6.318 19 S 0.232 5.768 20 H 0.106 0.894 21 H 0.149 0.851 22 H 0.123 0.877 23 H 0.071 0.929 24 H 0.132 0.868 25 H 0.076 0.924 26 H 0.103 0.897 27 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.334 -6.492 2.382 7.677 hybrid contribution -0.558 -0.895 0.326 1.104 sum 2.776 -7.388 2.708 8.344 Atomic orbital electron populations 1.70506 1.09293 1.34508 1.25706 1.29135 0.95515 1.07596 0.89707 0.82874 0.74653 0.68190 0.79933 1.19261 1.18167 1.16857 1.20527 1.01970 0.92585 1.33144 0.87964 1.23575 0.97269 0.95705 0.97270 1.21498 1.07189 0.93125 1.14288 1.65054 1.27802 0.99769 1.20463 1.25673 1.02460 0.98499 1.13758 1.20815 0.82480 0.86914 0.97809 0.90252 1.22940 0.99469 1.01264 0.93876 1.23066 0.94705 1.02089 0.98113 1.23842 1.00911 0.91027 0.88015 1.88991 1.23721 1.57316 1.61734 1.82708 1.37483 1.02069 1.54573 0.89430 0.85064 0.87747 0.92925 0.86756 0.92351 0.89730 0.88323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -41.03 12.54 21.86 0.27 -40.75 15 2 C 0.00 0.15 5.26 85.28 0.45 0.60 15 3 Si 1.13 38.68 29.99 68.60 2.06 40.74 15 4 H -0.27 -9.15 7.11 99.48 0.71 -8.44 15 5 H -0.26 -8.29 7.11 99.48 0.71 -7.58 15 6 H -0.25 -7.39 7.11 99.48 0.71 -6.68 15 7 C -0.44 -22.69 9.33 23.15 0.22 -22.48 15 8 H 0.10 4.80 7.94 -2.91 -0.02 4.78 15 9 C -0.02 -0.90 5.93 22.79 0.14 -0.76 15 10 C -0.21 -12.04 9.54 84.95 0.81 -11.23 15 11 N -0.42 -23.46 10.45 -188.21 -1.97 -25.43 15 12 C -0.13 -6.62 6.06 88.45 0.54 -6.09 15 13 C 0.18 7.18 3.92 30.22 0.12 7.30 15 14 H 0.08 2.85 8.14 -2.39 -0.02 2.83 15 15 C -0.14 -4.34 6.63 31.58 0.21 -4.13 15 16 C -0.14 -3.75 7.16 31.90 0.23 -3.52 15 17 C 0.04 1.05 7.72 72.67 0.56 1.61 15 18 O -0.40 -16.28 11.16 -148.98 -1.66 -17.95 15 19 S -0.02 -0.97 23.13 -56.49 -1.31 -2.27 15 20 H 0.29 16.59 6.24 -92.70 -0.58 16.01 15 21 H 0.13 7.83 6.66 -2.91 -0.02 7.81 15 22 H 0.10 2.54 8.14 -2.39 -0.02 2.52 15 23 H 0.05 1.95 7.69 -2.39 -0.02 1.94 15 24 H 0.11 2.07 8.14 -2.39 -0.02 2.05 15 25 H 0.06 1.74 8.14 -2.39 -0.02 1.72 15 26 H 0.08 1.83 8.14 -2.39 -0.02 1.81 15 27 H 0.10 2.44 8.14 -2.39 -0.02 2.42 15 Total: -1.00 -65.19 247.53 2.02 -63.16 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: 1.36 Total: 21.18 kcal Atomic # 6 Polarization: -41.95 SS G_CDS: 3.26 Total: -38.69 kcal Atomic # 7 Polarization: -64.49 SS G_CDS: -1.69 Total: -66.18 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: -1.66 Total: -17.95 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 2.06 Total: 40.74 kcal Atomic # 16 Polarization: -0.97 SS G_CDS: -1.31 Total: -2.27 kcal Total: -65.19 2.02 -63.16 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082416826.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.322 kcal (2) G-P(sol) polarization free energy of solvation -65.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds