Wall clock time and date at job start Mon Mar 30 2020 02:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99779 * 2 1 4 4 H 1.48504 * 109.46812 * 240.00296 * 3 2 1 5 5 H 1.48498 * 109.47280 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46882 * 120.00628 * 3 2 1 7 7 C 1.37878 * 119.99996 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99876 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99886 * 359.97438 * 7 2 1 10 10 O 1.42103 * 102.99982 * 73.12776 * 9 7 2 11 11 C 1.76203 * 102.99792 * 179.97438 * 9 7 2 12 12 C 1.38234 * 120.00235 * 89.99898 * 11 9 7 13 13 C 1.38234 * 120.00240 * 179.97438 * 12 11 9 14 14 C 1.38233 * 120.00037 * 0.26327 * 13 12 11 15 15 C 1.50693 * 120.00207 * 179.72405 * 14 13 12 16 16 N 1.46901 * 109.47201 * 89.99355 * 15 14 13 17 17 C 1.38238 * 119.99752 * 359.47832 * 14 13 12 18 18 C 1.38234 * 120.00033 * 0.49775 * 17 14 13 19 19 H 0.96999 * 120.00305 * 359.97438 * 1 2 3 20 20 H 1.07999 * 119.99751 * 359.97438 * 12 11 9 21 21 H 1.08002 * 119.99744 * 179.97438 * 13 12 11 22 22 H 1.09000 * 109.47097 * 209.99342 * 15 14 13 23 23 H 1.09001 * 109.47081 * 329.99847 * 15 14 13 24 24 H 1.00905 * 111.00315 * 180.02562 * 16 15 14 25 25 H 1.00894 * 111.00648 * 303.95689 * 16 15 14 26 26 H 1.07999 * 119.99934 * 180.25938 * 17 14 13 27 27 H 1.08001 * 120.00294 * 179.76453 * 18 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6964 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 16 1.1235 -2.7200 -0.0005 10 8 0.6151 -2.7956 -1.3254 11 6 2.4122 -3.9216 -0.0021 12 6 2.9186 -4.3936 1.1944 13 6 3.9293 -5.3367 1.1932 14 6 4.4372 -5.8039 -0.0045 15 6 5.5432 -6.8275 -0.0058 16 7 4.9619 -8.1765 -0.0085 17 6 3.9271 -5.3360 -1.2010 18 6 2.9161 -4.3932 -1.1998 19 1 -0.4850 0.8400 0.0004 20 1 2.5247 -4.0254 2.1302 21 1 4.3252 -5.7050 2.1281 22 1 6.1593 -6.6955 -0.8953 23 1 6.1584 -6.6988 0.8847 24 1 5.6839 -8.8815 -0.0090 25 1 4.3353 -8.3019 0.7722 26 1 4.3210 -5.7041 -2.1368 27 1 2.5201 -4.0248 -2.1347 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082637271.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:26 Heat of formation + Delta-G solvation = -30.424983 kcal Electronic energy + Delta-G solvation = -12799.876119 eV Core-core repulsion = 10455.385746 eV Total energy + Delta-G solvation = -2344.490372 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.68715 -34.64237 -33.67432 -32.80991 -30.32576 -30.04851 -25.78942 -24.74368 -22.09694 -20.78701 -18.13451 -16.75601 -16.08118 -15.28207 -15.03003 -14.69579 -14.26623 -14.07999 -13.31974 -13.00014 -12.87093 -12.33647 -12.00282 -11.56684 -11.20627 -11.02978 -10.78070 -10.56989 -10.44490 -10.23831 -9.02830 -8.83348 -8.46659 -8.32818 -8.25190 -6.99540 -6.32520 -4.80780 1.70325 2.00123 3.14635 3.19856 3.22558 3.75785 4.19184 4.26221 4.73558 4.83361 5.03181 5.14143 5.48420 5.50748 5.52011 5.67026 5.95057 6.07266 6.30280 6.45311 6.66047 6.82206 6.94002 7.08732 7.21502 7.34189 7.50169 7.59261 8.23583 9.10016 10.47613 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.048164 B = 0.007132 C = 0.006751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.211966 B = 3925.108395 C = 4146.340876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.120 3.880 3 Si 0.907 3.093 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.821 4.821 8 H 0.079 0.921 9 S 1.407 4.593 10 O -0.912 6.912 11 C -0.437 4.437 12 C -0.057 4.057 13 C -0.140 4.140 14 C -0.085 4.085 15 C 0.104 3.896 16 N -0.846 5.846 17 C -0.121 4.121 18 C -0.061 4.061 19 H 0.282 0.718 20 H 0.129 0.871 21 H 0.112 0.888 22 H 0.075 0.925 23 H 0.032 0.968 24 H 0.338 0.662 25 H 0.342 0.658 26 H 0.112 0.888 27 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.052 -9.520 6.464 13.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.092 4.092 3 Si 0.732 3.268 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.961 4.961 8 H 0.097 0.903 9 S 1.604 4.396 10 O -0.907 6.907 11 C -0.528 4.528 12 C -0.076 4.076 13 C -0.160 4.160 14 C -0.085 4.085 15 C -0.026 4.026 16 N -0.375 5.375 17 C -0.141 4.141 18 C -0.080 4.080 19 H 0.092 0.908 20 H 0.147 0.853 21 H 0.130 0.870 22 H 0.094 0.906 23 H 0.050 0.950 24 H 0.151 0.849 25 H 0.155 0.845 26 H 0.130 0.870 27 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.621 -9.435 5.729 12.387 hybrid contribution 2.674 1.131 -0.877 3.033 sum 8.295 -8.304 4.852 12.701 Atomic orbital electron populations 1.69834 1.06417 1.29531 1.44148 1.24733 0.94515 0.99815 0.90139 0.86418 0.79952 0.80987 0.79417 1.19701 1.20499 1.19138 1.27451 1.02053 1.05685 1.60886 0.90295 1.67912 0.83594 0.82686 1.05406 1.92792 1.71326 1.85683 1.40912 1.29353 1.14814 1.13080 0.95523 1.20810 0.94764 0.94719 0.97308 1.21010 0.98837 0.99571 0.96554 1.19663 0.97659 0.97481 0.93723 1.20674 0.93924 0.87487 1.00491 1.58699 1.23336 1.03290 1.52216 1.21020 0.97951 0.98121 0.96991 1.21180 0.93777 0.94345 0.98656 0.90815 0.85310 0.87005 0.90632 0.94974 0.84947 0.84494 0.87004 0.85867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.26 13.19 55.43 0.73 -23.53 15 2 C 0.12 3.30 5.46 -17.82 -0.10 3.20 15 3 Si 0.91 20.89 29.54 -169.99 -5.02 15.86 15 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 15 5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 15 6 H -0.27 -5.84 7.11 56.52 0.40 -5.44 15 7 C -0.82 -22.60 9.34 30.60 0.29 -22.32 15 8 H 0.08 2.17 7.81 -52.49 -0.41 1.76 15 9 S 1.41 34.64 13.39 -107.50 -1.44 33.20 15 10 O -0.91 -27.85 16.47 -35.23 -0.58 -28.43 15 11 C -0.44 -9.50 5.59 -39.58 -0.22 -9.72 15 12 C -0.06 -1.01 9.75 -39.58 -0.39 -1.40 15 13 C -0.14 -2.22 9.70 -39.58 -0.38 -2.60 15 14 C -0.08 -1.37 5.39 -104.63 -0.56 -1.94 15 15 C 0.10 1.30 6.91 -4.98 -0.03 1.26 15 16 N -0.85 -9.43 9.61 -11.41 -0.11 -9.54 15 17 C -0.12 -2.26 9.70 -39.58 -0.38 -2.65 15 18 C -0.06 -1.35 9.45 -39.58 -0.37 -1.72 15 19 H 0.28 7.29 8.31 -40.82 -0.34 6.95 15 20 H 0.13 1.86 8.06 -52.49 -0.42 1.44 15 21 H 0.11 1.40 8.06 -52.49 -0.42 0.98 15 22 H 0.08 0.91 8.09 -51.93 -0.42 0.49 15 23 H 0.03 0.35 8.09 -51.93 -0.42 -0.07 15 24 H 0.34 2.85 9.08 -39.29 -0.36 2.49 15 25 H 0.34 3.57 8.98 -39.29 -0.35 3.21 15 26 H 0.11 1.88 8.06 -52.49 -0.42 1.46 15 27 H 0.12 2.99 7.30 -52.49 -0.38 2.60 15 LS Contribution 256.67 15.07 3.87 3.87 Total: -1.00 -34.91 256.67 -7.46 -42.37 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -2.75 Total: 4.06 kcal Atomic # 6 Polarization: -35.71 SS G_CDS: -2.16 Total: -37.87 kcal Atomic # 7 Polarization: -33.69 SS G_CDS: 0.62 Total: -33.07 kcal Atomic # 8 Polarization: -27.85 SS G_CDS: -0.58 Total: -28.43 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: 34.64 SS G_CDS: -1.44 Total: 33.20 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -34.91 -7.46 -42.37 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082637271.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.944 kcal (2) G-P(sol) polarization free energy of solvation -34.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds