Wall clock time and date at job start Mon Mar 30 2020 02:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 119.99968 * 2 1 4 4 H 1.48494 * 109.47227 * 269.99825 * 3 2 1 5 5 H 1.48503 * 109.46966 * 29.99857 * 3 2 1 6 6 H 1.48500 * 109.46978 * 149.99964 * 3 2 1 7 7 C 1.37875 * 119.99803 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00087 * 359.97438 * 7 2 1 9 9 S 1.76205 * 119.99724 * 180.02562 * 7 2 1 10 10 O 1.42105 * 102.99887 * 286.86946 * 9 7 2 11 11 C 1.76197 * 102.99952 * 179.97438 * 9 7 2 12 12 C 1.38270 * 119.99950 * 94.72208 * 11 9 7 13 13 C 1.38207 * 119.99612 * 179.78858 * 12 11 9 14 14 C 1.38251 * 120.00677 * 0.44210 * 13 12 11 15 15 C 1.38220 * 119.99477 * 359.81745 * 14 13 12 16 16 C 1.38208 * 120.00298 * 275.00284 * 11 9 7 17 17 C 1.50704 * 119.99760 * 359.97364 * 16 11 9 18 18 N 1.46900 * 109.46960 * 80.00398 * 17 16 11 19 19 H 0.97001 * 119.99880 * 0.02562 * 1 2 3 20 20 H 1.08000 * 119.99530 * 0.02562 * 12 11 9 21 21 H 1.08007 * 119.99773 * 180.27972 * 13 12 11 22 22 H 1.07999 * 120.00439 * 179.83592 * 14 13 12 23 23 H 1.08005 * 119.99776 * 179.97438 * 15 14 13 24 24 H 1.08998 * 109.47321 * 200.00054 * 17 16 11 25 25 H 1.08997 * 109.47416 * 320.00887 * 17 16 11 26 26 H 1.00903 * 110.99969 * 179.97438 * 18 17 16 27 27 H 1.00895 * 111.00143 * 303.95935 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 16 3.7666 -1.1940 0.0001 10 8 4.0867 -0.7913 -1.3245 11 6 4.1630 -2.9108 -0.0001 12 6 4.4150 -3.5620 -1.1935 13 6 4.7302 -4.9077 -1.1933 14 6 4.7845 -5.6048 -0.0006 15 6 4.5273 -4.9551 1.1919 16 6 4.2163 -3.6080 1.1921 17 6 3.9359 -2.8995 2.4924 18 7 2.4843 -2.7692 2.6759 19 1 -0.4850 0.8401 -0.0004 20 1 4.3693 -3.0182 -2.1255 21 1 4.9315 -5.4153 -2.1251 22 1 5.0282 -6.6570 -0.0007 23 1 4.5693 -5.4997 2.1236 24 1 4.3562 -3.4746 3.3174 25 1 4.3898 -1.9088 2.4716 26 1 2.2702 -2.2974 3.5417 27 1 2.0617 -2.2957 1.8915 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082637272.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:28 Heat of formation + Delta-G solvation = -21.507564 kcal Electronic energy + Delta-G solvation = -13432.182469 eV Core-core repulsion = 11088.078785 eV Total energy + Delta-G solvation = -2344.103684 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.69550 -34.58721 -33.82292 -32.86354 -30.38344 -29.85949 -26.12456 -24.41307 -22.29759 -20.69180 -18.28457 -16.61629 -16.04760 -15.46677 -14.97978 -14.65248 -14.20978 -13.86411 -13.38203 -12.91567 -12.68729 -12.54195 -11.90971 -11.72301 -11.43924 -11.35677 -10.92157 -10.62796 -10.42337 -10.09710 -9.13999 -8.79370 -8.50902 -8.36591 -7.98822 -7.15857 -6.63991 -4.93693 1.65899 1.90128 2.93007 2.98061 3.19082 3.52801 3.95211 4.14630 4.62251 4.89492 5.17439 5.33691 5.40800 5.54775 5.56527 5.71131 5.86153 5.99054 6.22382 6.39638 6.57428 6.89306 6.92989 7.06385 7.49560 7.61260 7.79276 8.23681 8.38532 8.84987 10.45233 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.035611 B = 0.011474 C = 0.010107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.075108 B = 2439.715203 C = 2769.596021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.135 3.865 3 Si 0.837 3.163 4 H -0.256 1.256 5 H -0.263 1.263 6 H -0.245 1.245 7 C -0.819 4.819 8 H 0.104 0.896 9 S 1.332 4.668 10 O -0.921 6.921 11 C -0.422 4.422 12 C -0.056 4.056 13 C -0.144 4.144 14 C -0.109 4.109 15 C -0.126 4.126 16 C -0.018 4.018 17 C 0.091 3.909 18 N -0.860 5.860 19 H 0.276 0.724 20 H 0.126 0.874 21 H 0.114 0.886 22 H 0.115 0.885 23 H 0.119 0.881 24 H 0.076 0.924 25 H 0.042 0.958 26 H 0.336 0.664 27 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.224 -3.961 7.011 11.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.081 4.081 3 Si 0.660 3.340 4 H -0.181 1.181 5 H -0.187 1.187 6 H -0.169 1.169 7 C -0.960 4.960 8 H 0.122 0.878 9 S 1.534 4.466 10 O -0.915 6.915 11 C -0.516 4.516 12 C -0.075 4.075 13 C -0.164 4.164 14 C -0.127 4.127 15 C -0.146 4.146 16 C -0.020 4.020 17 C -0.040 4.040 18 N -0.398 5.398 19 H 0.087 0.913 20 H 0.144 0.856 21 H 0.132 0.868 22 H 0.133 0.867 23 H 0.137 0.863 24 H 0.094 0.906 25 H 0.060 0.940 26 H 0.148 0.852 27 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 8.680 -3.890 6.956 11.784 hybrid contribution -0.702 0.376 -1.909 2.068 sum 7.978 -3.514 5.048 10.074 Atomic orbital electron populations 1.70006 1.06539 1.28444 1.42013 1.24601 0.94469 0.98766 0.90243 0.87252 0.80999 0.84573 0.81151 1.18057 1.18723 1.16923 1.27308 1.07668 0.99637 1.61406 0.87809 1.67929 0.91229 0.81238 1.06175 1.92861 1.84112 1.73997 1.40570 1.28288 1.06252 1.21400 0.95642 1.21091 0.94357 0.93894 0.98174 1.21158 1.02529 0.94967 0.97707 1.21096 0.99611 0.99081 0.92900 1.21010 1.01584 0.94284 0.97702 1.19467 0.95312 0.93534 0.93702 1.20757 0.90913 0.98258 0.94029 1.59034 1.08615 1.62234 1.09942 0.91337 0.85630 0.86800 0.86686 0.86299 0.90587 0.93962 0.85226 0.80255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.49 13.96 55.43 0.77 -22.72 15 2 C 0.13 3.63 5.47 -17.82 -0.10 3.54 15 3 Si 0.84 19.39 27.11 -169.99 -4.61 14.78 15 4 H -0.26 -6.39 7.11 56.52 0.40 -5.99 15 5 H -0.26 -5.61 7.11 56.52 0.40 -5.21 15 6 H -0.24 -4.97 6.73 56.52 0.38 -4.59 15 7 C -0.82 -21.94 7.45 30.60 0.23 -21.71 15 8 H 0.10 3.05 7.59 -52.49 -0.40 2.65 15 9 S 1.33 31.02 9.84 -107.50 -1.06 29.96 15 10 O -0.92 -26.06 15.58 -35.23 -0.55 -26.61 15 11 C -0.42 -9.12 5.60 -39.58 -0.22 -9.34 15 12 C -0.06 -1.22 9.46 -39.58 -0.37 -1.59 15 13 C -0.14 -2.59 10.05 -39.59 -0.40 -2.99 15 14 C -0.11 -1.75 10.05 -39.58 -0.40 -2.15 15 15 C -0.13 -2.09 9.67 -39.58 -0.38 -2.47 15 16 C -0.02 -0.34 5.39 -104.63 -0.56 -0.91 15 17 C 0.09 1.43 6.31 -4.97 -0.03 1.40 15 18 N -0.86 -14.95 9.61 -11.41 -0.11 -15.06 15 19 H 0.28 7.09 8.31 -40.82 -0.34 6.75 15 20 H 0.13 2.93 7.23 -52.49 -0.38 2.55 15 21 H 0.11 1.73 8.06 -52.48 -0.42 1.30 15 22 H 0.12 1.46 8.06 -52.49 -0.42 1.04 15 23 H 0.12 1.62 8.04 -52.48 -0.42 1.19 15 24 H 0.08 0.97 8.00 -51.93 -0.42 0.55 15 25 H 0.04 0.59 7.23 -51.93 -0.38 0.21 15 26 H 0.34 4.81 9.08 -39.29 -0.36 4.45 15 27 H 0.37 7.68 5.19 -39.29 -0.20 7.47 15 LS Contribution 243.27 15.07 3.67 3.67 Total: -1.00 -33.14 243.27 -6.68 -39.82 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -2.55 Total: 12.39 kcal Atomic # 6 Polarization: -33.98 SS G_CDS: -2.24 Total: -36.22 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: 0.66 Total: -37.78 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.55 Total: -26.61 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -4.61 Total: 14.78 kcal Atomic # 16 Polarization: 31.02 SS G_CDS: -1.06 Total: 29.96 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -33.14 -6.68 -39.82 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082637272.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.314 kcal (2) G-P(sol) polarization free energy of solvation -33.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds