Wall clock time and date at job start Mon Mar 30 2020 02:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00155 * 2 1 4 4 H 1.48495 * 109.47166 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46860 * 300.00242 * 3 2 1 6 6 H 1.48502 * 109.46860 * 59.99853 * 3 2 1 7 7 C 1.37883 * 119.99872 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99712 * 180.02562 * 7 2 1 9 9 S 1.76193 * 120.00248 * 359.97438 * 7 2 1 10 10 O 1.42098 * 103.00173 * 73.12906 * 9 7 2 11 11 C 1.76198 * 103.00072 * 180.02562 * 9 7 2 12 12 C 1.38257 * 120.00248 * 98.07524 * 11 9 7 13 13 C 1.38211 * 119.99900 * 180.25687 * 12 11 9 14 14 C 1.38263 * 120.00060 * 359.78042 * 13 12 11 15 15 C 1.38206 * 119.99880 * 359.96459 * 14 13 12 16 16 C 1.38220 * 119.99723 * 277.83931 * 11 9 7 17 17 C 1.50692 * 119.99933 * 0.02562 * 16 11 9 18 18 N 1.46911 * 109.47022 * 172.96820 * 17 16 11 19 19 H 0.96991 * 119.99885 * 359.97438 * 1 2 3 20 20 H 1.07995 * 119.99811 * 0.02562 * 12 11 9 21 21 H 1.08005 * 119.99854 * 179.77268 * 13 12 11 22 22 H 1.07999 * 119.99659 * 179.97438 * 14 13 12 23 23 H 1.08005 * 119.99783 * 179.97438 * 15 14 13 24 24 H 1.08997 * 109.47495 * 52.97355 * 17 16 11 25 25 H 1.08996 * 109.47336 * 292.96302 * 17 16 11 26 26 H 1.00900 * 110.99489 * 59.99765 * 18 17 16 27 27 H 1.00900 * 110.99925 * 183.95633 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 16 1.1236 -2.7200 -0.0005 10 8 0.6153 -2.7957 -1.3253 11 6 2.4122 -3.9217 -0.0005 12 6 2.8032 -4.5162 1.1849 13 6 3.8176 -5.4549 1.1856 14 6 4.4384 -5.8027 0.0001 15 6 4.0440 -5.2123 -1.1856 16 6 3.0290 -4.2735 -1.1864 17 6 2.5997 -3.6290 -2.4791 18 7 3.5092 -4.0403 -3.5570 19 1 -0.4849 0.8400 0.0004 20 1 2.3184 -4.2443 2.1108 21 1 4.1255 -5.9166 2.1122 22 1 5.2314 -6.5359 0.0008 23 1 4.5293 -5.4837 -2.1115 24 1 2.6300 -2.5448 -2.3722 25 1 1.5841 -3.9420 -2.7215 26 1 3.4991 -5.0423 -3.6760 27 1 3.2816 -3.5712 -4.4209 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082637273.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:30 Heat of formation + Delta-G solvation = -20.865978 kcal Electronic energy + Delta-G solvation = -13329.743462 eV Core-core repulsion = 10985.667600 eV Total energy + Delta-G solvation = -2344.075863 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.57537 -34.57240 -33.43862 -32.81664 -30.35887 -29.64111 -25.77947 -24.40727 -22.07087 -20.38232 -18.11719 -16.85922 -15.46496 -15.33492 -14.87497 -14.57487 -14.24850 -13.57119 -13.30746 -12.99116 -12.57850 -11.91772 -11.66009 -11.52446 -11.20667 -10.96205 -10.76063 -10.50618 -10.42364 -10.11390 -9.04614 -8.58732 -8.43841 -8.21614 -7.76553 -6.97819 -6.33833 -4.80878 1.83139 2.04348 3.11351 3.20303 3.26394 3.76183 4.21722 4.36169 4.81506 5.08976 5.42915 5.47919 5.50064 5.59801 5.88608 6.01680 6.25946 6.45428 6.50113 6.59258 6.88769 7.01117 7.03068 7.23338 7.49854 7.61957 7.68535 7.86353 8.25556 9.10015 10.46000 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.030679 B = 0.010285 C = 0.009528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.448767 B = 2721.751722 C = 2938.108095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.121 3.879 3 Si 0.904 3.096 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.274 1.274 7 C -0.817 4.817 8 H 0.080 0.920 9 S 1.404 4.596 10 O -0.910 6.910 11 C -0.447 4.447 12 C -0.055 4.055 13 C -0.154 4.154 14 C -0.114 4.114 15 C -0.136 4.136 16 C -0.017 4.017 17 C 0.092 3.908 18 N -0.856 5.856 19 H 0.280 0.720 20 H 0.127 0.873 21 H 0.114 0.886 22 H 0.110 0.890 23 H 0.120 0.880 24 H 0.099 0.901 25 H 0.072 0.928 26 H 0.329 0.671 27 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.612 -7.435 2.805 8.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.091 4.091 3 Si 0.730 3.270 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.199 1.199 7 C -0.957 4.957 8 H 0.098 0.902 9 S 1.602 4.398 10 O -0.904 6.904 11 C -0.538 4.538 12 C -0.074 4.074 13 C -0.173 4.173 14 C -0.132 4.132 15 C -0.155 4.155 16 C -0.019 4.019 17 C -0.037 4.037 18 N -0.386 5.386 19 H 0.090 0.910 20 H 0.145 0.855 21 H 0.132 0.868 22 H 0.128 0.872 23 H 0.138 0.862 24 H 0.117 0.883 25 H 0.090 0.910 26 H 0.140 0.860 27 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.049 -7.227 3.242 8.488 hybrid contribution 1.404 0.867 -2.135 2.699 sum 4.453 -6.360 1.106 7.842 Atomic orbital electron populations 1.69852 1.06391 1.29263 1.44445 1.24714 0.94462 0.99759 0.90140 0.86378 0.80684 0.81801 0.78173 1.19135 1.20337 1.19895 1.27487 1.02170 1.05554 1.60524 0.90201 1.67949 0.83757 0.82678 1.05453 1.92780 1.71601 1.85579 1.40457 1.29171 1.15358 1.14049 0.95249 1.20777 0.95419 0.94327 0.96902 1.21125 0.98606 1.00111 0.97448 1.21061 0.99367 0.99577 0.93197 1.21048 0.98309 0.98296 0.97892 1.19913 0.93329 0.93933 0.94706 1.21073 0.93856 1.01372 0.87436 1.58919 1.58507 1.11014 1.10124 0.90996 0.85468 0.86842 0.87186 0.86204 0.88251 0.90994 0.85954 0.85015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.75 13.19 55.43 0.73 -23.02 15 2 C 0.12 3.27 5.46 -17.82 -0.10 3.17 15 3 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 15 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 15 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 6 H -0.27 -5.94 7.11 56.52 0.40 -5.53 15 7 C -0.82 -21.99 8.94 30.60 0.27 -21.71 15 8 H 0.08 2.20 7.81 -52.48 -0.41 1.79 15 9 S 1.40 33.36 13.09 -107.50 -1.41 31.96 15 10 O -0.91 -25.62 13.42 -35.23 -0.47 -26.10 15 11 C -0.45 -9.64 5.57 -39.58 -0.22 -9.86 15 12 C -0.06 -0.99 9.75 -39.58 -0.39 -1.38 15 13 C -0.15 -2.51 10.05 -39.58 -0.40 -2.90 15 14 C -0.11 -1.90 10.05 -39.58 -0.40 -2.29 15 15 C -0.14 -2.57 9.20 -39.59 -0.36 -2.93 15 16 C -0.02 -0.38 5.86 -104.63 -0.61 -0.99 15 17 C 0.09 2.06 5.26 -4.97 -0.03 2.04 15 18 N -0.86 -15.37 8.69 -11.41 -0.10 -15.47 15 19 H 0.28 7.10 8.31 -40.82 -0.34 6.76 15 20 H 0.13 1.84 8.06 -52.49 -0.42 1.42 15 21 H 0.11 1.46 8.06 -52.48 -0.42 1.04 15 22 H 0.11 1.48 8.06 -52.49 -0.42 1.06 15 23 H 0.12 2.04 6.34 -52.48 -0.33 1.71 15 24 H 0.10 2.61 7.00 -51.93 -0.36 2.24 15 25 H 0.07 1.74 6.65 -51.93 -0.35 1.40 15 26 H 0.33 5.12 7.78 -39.29 -0.31 4.81 15 27 H 0.34 5.44 9.08 -39.29 -0.36 5.09 15 LS Contribution 246.52 15.07 3.72 3.72 Total: -1.00 -32.75 246.52 -7.30 -40.05 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -2.52 Total: 9.98 kcal Atomic # 6 Polarization: -34.63 SS G_CDS: -2.23 Total: -36.86 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.63 Total: -38.48 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -0.47 Total: -26.10 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: 33.36 SS G_CDS: -1.41 Total: 31.96 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -32.75 -7.30 -40.05 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082637273.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.186 kcal (2) G-P(sol) polarization free energy of solvation -32.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds