Wall clock time and date at job start Mon Mar 30 2020 02:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00155 * 2 1 4 4 H 1.48495 * 109.47166 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46860 * 300.00242 * 3 2 1 6 6 H 1.48502 * 109.46860 * 59.99853 * 3 2 1 7 7 C 1.37883 * 119.99872 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99712 * 180.02562 * 7 2 1 9 9 S 1.76193 * 120.00248 * 359.97438 * 7 2 1 10 10 O 1.42098 * 103.00173 * 73.12906 * 9 7 2 11 11 C 1.76198 * 103.00072 * 180.02562 * 9 7 2 12 12 C 1.38257 * 120.00248 * 98.07524 * 11 9 7 13 13 C 1.38211 * 119.99900 * 180.25687 * 12 11 9 14 14 C 1.38263 * 120.00060 * 359.78042 * 13 12 11 15 15 C 1.38206 * 119.99880 * 359.96459 * 14 13 12 16 16 C 1.38220 * 119.99723 * 277.83931 * 11 9 7 17 17 C 1.50692 * 119.99933 * 0.02562 * 16 11 9 18 18 N 1.46911 * 109.47022 * 172.96820 * 17 16 11 19 19 H 0.96991 * 119.99885 * 359.97438 * 1 2 3 20 20 H 1.07995 * 119.99811 * 0.02562 * 12 11 9 21 21 H 1.08005 * 119.99854 * 179.77268 * 13 12 11 22 22 H 1.07999 * 119.99659 * 179.97438 * 14 13 12 23 23 H 1.08005 * 119.99783 * 179.97438 * 15 14 13 24 24 H 1.08997 * 109.47495 * 52.97355 * 17 16 11 25 25 H 1.08996 * 109.47336 * 292.96302 * 17 16 11 26 26 H 1.00900 * 110.99489 * 59.99765 * 18 17 16 27 27 H 1.00900 * 110.99925 * 183.95633 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 16 1.1236 -2.7200 -0.0005 10 8 0.6153 -2.7957 -1.3253 11 6 2.4122 -3.9217 -0.0005 12 6 2.8032 -4.5162 1.1849 13 6 3.8176 -5.4549 1.1856 14 6 4.4384 -5.8027 0.0001 15 6 4.0440 -5.2123 -1.1856 16 6 3.0290 -4.2735 -1.1864 17 6 2.5997 -3.6290 -2.4791 18 7 3.5092 -4.0403 -3.5570 19 1 -0.4849 0.8400 0.0004 20 1 2.3184 -4.2443 2.1108 21 1 4.1255 -5.9166 2.1122 22 1 5.2314 -6.5359 0.0008 23 1 4.5293 -5.4837 -2.1115 24 1 2.6300 -2.5448 -2.3722 25 1 1.5841 -3.9420 -2.7215 26 1 3.4991 -5.0423 -3.6760 27 1 3.2816 -3.5712 -4.4209 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082637273.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:30 Heat of formation + Delta-G solvation = -45.877837 kcal Electronic energy + Delta-G solvation = -13330.828058 eV Core-core repulsion = 10985.667600 eV Total energy + Delta-G solvation = -2345.160459 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.04145 -36.29757 -35.30286 -34.87162 -31.82088 -31.09014 -27.85747 -25.98965 -23.54919 -21.89876 -20.07623 -18.45713 -17.35720 -17.04773 -16.52716 -16.07244 -15.85634 -15.33695 -15.00213 -14.57475 -14.12336 -13.66149 -13.35530 -13.17039 -12.99896 -12.80200 -12.70494 -12.26137 -12.02680 -11.78817 -11.04229 -10.43524 -9.99470 -9.72179 -9.37310 -8.94339 -8.33944 -6.90435 0.33503 0.60781 1.28891 1.32100 1.44768 1.97509 2.35765 2.76325 2.88911 3.55870 3.56969 3.98073 4.09236 4.24711 4.29848 4.56192 4.69717 4.78755 4.98589 5.12575 5.34834 5.42816 5.55738 5.63842 5.72239 6.09077 6.13504 6.25313 6.48847 7.02438 8.44516 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.030679 B = 0.010285 C = 0.009528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.448767 B = 2721.751722 C = 2938.108095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.075 3.925 3 Si 0.961 3.039 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.247 1.247 7 C -0.841 4.841 8 H 0.062 0.938 9 S 1.436 4.564 10 O -0.963 6.963 11 C -0.477 4.477 12 C -0.058 4.058 13 C -0.144 4.144 14 C -0.105 4.105 15 C -0.143 4.143 16 C -0.053 4.053 17 C 0.108 3.892 18 N -0.845 5.845 19 H 0.287 0.713 20 H 0.160 0.840 21 H 0.160 0.840 22 H 0.153 0.847 23 H 0.135 0.865 24 H 0.050 0.950 25 H 0.042 0.958 26 H 0.346 0.654 27 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.533 -8.750 4.318 11.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.135 4.135 3 Si 0.783 3.217 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.170 1.170 7 C -0.980 4.980 8 H 0.081 0.919 9 S 1.636 4.364 10 O -0.958 6.958 11 C -0.571 4.571 12 C -0.077 4.077 13 C -0.163 4.163 14 C -0.123 4.123 15 C -0.162 4.162 16 C -0.055 4.055 17 C -0.023 4.023 18 N -0.377 5.377 19 H 0.097 0.903 20 H 0.177 0.823 21 H 0.178 0.822 22 H 0.170 0.830 23 H 0.153 0.847 24 H 0.068 0.932 25 H 0.060 0.940 26 H 0.160 0.840 27 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 4.941 -8.520 4.753 10.936 hybrid contribution 0.923 1.104 -2.575 2.950 sum 5.864 -7.416 2.178 9.701 Atomic orbital electron populations 1.69898 1.07446 1.30460 1.44904 1.25521 0.95326 1.02937 0.89714 0.85525 0.78905 0.78189 0.79070 1.19772 1.20485 1.17046 1.27775 1.01473 1.07859 1.60878 0.91919 1.66975 0.84035 0.81591 1.03774 1.92706 1.74094 1.86385 1.42597 1.28704 1.16264 1.14912 0.97240 1.21245 0.95821 0.94044 0.96618 1.21663 0.96791 0.98515 0.99288 1.21605 0.99424 0.99019 0.92214 1.21269 0.97387 0.97707 0.99882 1.20002 0.95425 0.95979 0.94070 1.20583 0.93336 0.98469 0.89875 1.58826 1.56797 1.12403 1.09659 0.90292 0.82285 0.82229 0.82981 0.84740 0.93191 0.93993 0.84020 0.83978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.05 13.19 21.45 0.28 -49.77 15 2 C 0.07 4.08 5.46 84.66 0.46 4.55 15 3 Si 0.96 42.95 29.54 68.60 2.03 44.97 15 4 H -0.27 -12.34 7.11 99.48 0.71 -11.64 15 5 H -0.28 -12.46 7.11 99.48 0.71 -11.75 15 6 H -0.25 -9.91 7.11 99.48 0.71 -9.20 15 7 C -0.84 -46.83 8.94 67.74 0.61 -46.22 15 8 H 0.06 3.58 7.81 -2.91 -0.02 3.56 15 9 S 1.44 70.86 13.09 -56.49 -0.74 70.12 15 10 O -0.96 -57.41 13.42 -148.98 -2.00 -59.41 15 11 C -0.48 -20.56 5.57 22.27 0.12 -20.44 15 12 C -0.06 -1.95 9.75 22.27 0.22 -1.73 15 13 C -0.14 -3.98 10.05 22.27 0.22 -3.76 15 14 C -0.10 -3.00 10.05 22.27 0.22 -2.78 15 15 C -0.14 -5.08 9.20 22.27 0.20 -4.87 15 16 C -0.05 -2.34 5.86 -19.87 -0.12 -2.45 15 17 C 0.11 5.07 5.26 85.55 0.45 5.52 15 18 N -0.85 -30.55 8.69 -190.00 -1.65 -32.20 15 19 H 0.29 14.75 8.31 -92.71 -0.77 13.98 15 20 H 0.16 4.10 8.06 -2.91 -0.02 4.08 15 21 H 0.16 3.00 8.06 -2.91 -0.02 2.98 15 22 H 0.15 3.12 8.06 -2.91 -0.02 3.09 15 23 H 0.13 4.23 6.34 -2.91 -0.02 4.21 15 24 H 0.05 2.81 7.00 -2.39 -0.02 2.79 15 25 H 0.04 2.18 6.65 -2.39 -0.02 2.16 15 26 H 0.35 10.49 7.78 -89.69 -0.70 9.79 15 27 H 0.35 11.35 9.08 -89.69 -0.81 10.53 15 Total: -1.00 -73.88 246.52 0.01 -73.87 By element: Atomic # 1 Polarization: 24.90 SS G_CDS: -0.31 Total: 24.60 kcal Atomic # 6 Polarization: -74.58 SS G_CDS: 2.39 Total: -72.18 kcal Atomic # 7 Polarization: -80.60 SS G_CDS: -1.37 Total: -81.97 kcal Atomic # 8 Polarization: -57.41 SS G_CDS: -2.00 Total: -59.41 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.97 kcal Atomic # 16 Polarization: 70.86 SS G_CDS: -0.74 Total: 70.12 kcal Total: -73.88 0.01 -73.87 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082637273.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.994 kcal (2) G-P(sol) polarization free energy of solvation -73.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds