Wall clock time and date at job start Mon Mar 30 2020 02:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30695 * 1 3 3 Si 1.86794 * 119.99966 * 2 1 4 4 H 1.48505 * 109.47027 * 240.00025 * 3 2 1 5 5 H 1.48503 * 109.47247 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47312 * 120.00047 * 3 2 1 7 7 C 1.40247 * 119.99787 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99738 * 179.97438 * 7 2 1 9 9 C 1.39904 * 120.00277 * 0.02562 * 7 2 1 10 10 N 1.31370 * 125.57223 * 180.02562 * 9 7 2 11 11 C 1.31378 * 116.61522 * 180.02562 * 10 9 7 12 12 C 1.36101 * 114.28056 * 0.02993 * 11 10 9 13 13 S 1.70894 * 109.77176 * 359.96040 * 12 11 10 14 14 C 1.51325 * 124.79320 * 179.97438 * 12 11 10 15 15 C 1.53196 * 108.62970 * 343.76777 * 14 12 11 16 16 C 1.53123 * 109.00701 * 49.71806 * 15 14 12 17 17 C 1.52359 * 123.21868 * 180.02562 * 11 10 9 18 18 H 1.09002 * 109.59153 * 282.18575 * 17 11 10 19 19 O 1.42903 * 109.59118 * 42.63150 * 17 11 10 20 20 H 0.96998 * 119.99977 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.61038 * 224.02023 * 14 12 11 22 22 H 1.09003 * 109.60993 * 103.51088 * 14 12 11 23 23 H 1.09003 * 109.54555 * 169.57551 * 15 14 12 24 24 H 1.08995 * 109.54655 * 289.85740 * 15 14 12 25 25 H 1.09004 * 109.48205 * 48.99928 * 16 15 14 26 26 H 1.09007 * 109.48087 * 169.03092 * 16 15 14 27 27 H 0.96707 * 113.99442 * 299.25434 * 19 17 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 3.0947 1.6963 -1.2126 5 1 1.2759 2.7464 -0.0006 6 1 3.0947 1.6964 1.2125 7 6 2.0081 -1.2146 0.0005 8 1 3.0882 -1.2146 0.0001 9 6 1.3086 -2.4262 0.0005 10 7 1.8519 -3.6223 0.0015 11 6 1.0259 -4.6439 0.0008 12 6 -0.2907 -4.2991 -0.0015 13 16 -0.4425 -2.5969 -0.0016 14 6 -1.4408 -5.2825 -0.0033 15 6 -0.9063 -6.6600 -0.4080 16 6 0.3274 -6.9847 0.4389 17 6 1.4923 -6.0944 0.0023 18 1 1.8121 -6.3765 -1.0008 19 8 2.5805 -6.2469 0.9159 20 1 -0.4850 0.8400 -0.0004 21 1 -2.1975 -4.9592 -0.7182 22 1 -1.8765 -5.3378 0.9944 23 1 -1.6748 -7.4140 -0.2371 24 1 -0.6321 -6.6493 -1.4628 25 1 0.1047 -6.8027 1.4903 26 1 0.5981 -8.0315 0.3004 27 1 3.3546 -5.7094 0.6986 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083117337.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:28 Heat of formation + Delta-G solvation = -70.769090 kcal Electronic energy + Delta-G solvation = -13310.157864 eV Core-core repulsion = 10963.918040 eV Total energy + Delta-G solvation = -2346.239824 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.35267 -37.60447 -36.28778 -35.52919 -30.79525 -30.37567 -27.90020 -24.51963 -23.62845 -21.97871 -19.95908 -18.92560 -18.19210 -17.75107 -16.76040 -15.93473 -15.38404 -15.12855 -14.63908 -14.45999 -14.19094 -13.72449 -13.45583 -13.07535 -12.87037 -12.52863 -12.19992 -12.05419 -11.93585 -11.79671 -11.50018 -11.25987 -10.63838 -9.71904 -9.60217 -9.07686 -8.87797 -6.67804 0.62426 1.38227 1.48680 1.51934 1.54445 2.02162 2.18692 2.22993 3.10676 3.39856 3.81522 4.01660 4.09764 4.37763 4.50385 4.58120 4.86928 4.89392 4.95794 4.99438 5.09908 5.13127 5.40475 5.47837 5.77696 5.93548 6.40163 6.47657 6.72187 7.79618 8.02439 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.047941 B = 0.008866 C = 0.007620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.910717 B = 3157.355712 C = 3673.574448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.020 3.980 3 Si 1.019 2.981 4 H -0.255 1.255 5 H -0.258 1.258 6 H -0.256 1.256 7 C -0.407 4.407 8 H 0.101 0.899 9 C 0.175 3.825 10 N -0.630 5.630 11 C 0.050 3.950 12 C -0.428 4.428 13 S 0.080 5.920 14 C -0.015 4.015 15 C -0.099 4.099 16 C -0.099 4.099 17 C 0.184 3.816 18 H 0.064 0.936 19 O -0.572 6.572 20 H 0.310 0.690 21 H 0.060 0.940 22 H 0.056 0.944 23 H 0.102 0.898 24 H 0.063 0.937 25 H 0.055 0.945 26 H 0.095 0.905 27 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.618 -3.472 -1.198 4.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.199 4.199 3 Si 0.837 3.163 4 H -0.179 1.179 5 H -0.181 1.181 6 H -0.180 1.180 7 C -0.450 4.450 8 H 0.119 0.881 9 C -0.078 4.078 10 N -0.353 5.353 11 C -0.088 4.088 12 C -0.553 4.553 13 S 0.340 5.660 14 C -0.054 4.054 15 C -0.138 4.138 16 C -0.137 4.137 17 C 0.123 3.877 18 H 0.081 0.919 19 O -0.379 6.379 20 H 0.124 0.876 21 H 0.079 0.921 22 H 0.074 0.926 23 H 0.120 0.880 24 H 0.082 0.918 25 H 0.074 0.926 26 H 0.113 0.887 27 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -2.585 -3.084 -0.912 4.126 hybrid contribution 1.005 0.363 -0.220 1.091 sum -1.580 -2.721 -1.132 3.344 Atomic orbital electron populations 1.68837 1.09113 1.32635 1.32494 1.27199 0.95913 1.05560 0.91276 0.84665 0.78270 0.72962 0.80452 1.17905 1.18133 1.18045 1.19299 0.95975 0.88352 1.41331 0.88123 1.24114 0.92170 0.94757 0.96802 1.66906 1.36869 0.97685 1.33852 1.21864 0.89334 0.96595 1.01002 1.25731 0.98984 1.02077 1.28518 1.83939 1.11328 0.96199 1.74516 1.19821 0.92919 0.92483 1.00178 1.21489 0.96897 0.95985 0.99410 1.21446 0.93028 0.98984 1.00261 1.20670 0.87398 0.87500 0.92180 0.91869 1.86289 1.27179 1.69411 1.54989 0.87631 0.92095 0.92588 0.87959 0.91813 0.92610 0.88678 0.76461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.89 10.67 21.88 0.23 -38.66 15 2 C 0.02 0.96 5.50 85.35 0.47 1.43 15 3 Si 1.02 35.02 29.56 68.60 2.03 37.05 15 4 H -0.26 -8.52 7.11 99.48 0.71 -7.81 15 5 H -0.26 -8.12 7.11 99.48 0.71 -7.41 15 6 H -0.26 -8.63 7.11 99.48 0.71 -7.92 15 7 C -0.41 -21.73 9.45 23.16 0.22 -21.51 15 8 H 0.10 5.19 7.85 -2.91 -0.02 5.16 15 9 C 0.17 9.94 7.13 85.17 0.61 10.55 15 10 N -0.63 -35.03 10.41 -180.74 -1.88 -36.91 15 11 C 0.05 2.52 6.41 42.66 0.27 2.79 15 12 C -0.43 -20.75 6.20 25.39 0.16 -20.59 15 13 S 0.08 4.24 20.14 -56.49 -1.14 3.10 15 14 C -0.01 -0.55 6.24 30.11 0.19 -0.36 15 15 C -0.10 -2.95 5.94 30.70 0.18 -2.77 15 16 C -0.10 -3.25 5.52 30.63 0.17 -3.08 15 17 C 0.18 7.39 3.82 30.38 0.12 7.51 15 18 H 0.06 2.38 8.14 -2.39 -0.02 2.36 15 19 O -0.57 -23.17 13.31 -148.98 -1.98 -25.15 15 20 H 0.31 13.25 8.29 -92.71 -0.77 12.48 15 21 H 0.06 2.16 8.14 -2.39 -0.02 2.14 15 22 H 0.06 2.02 8.14 -2.39 -0.02 2.00 15 23 H 0.10 2.27 8.14 -2.39 -0.02 2.25 15 24 H 0.06 1.88 8.10 -2.39 -0.02 1.86 15 25 H 0.06 1.97 8.10 -2.38 -0.02 1.95 15 26 H 0.09 2.50 8.14 -2.38 -0.02 2.48 15 27 H 0.39 14.66 8.89 -74.05 -0.66 14.00 15 Total: -1.00 -63.24 243.58 0.18 -63.06 By element: Atomic # 1 Polarization: 23.01 SS G_CDS: 0.53 Total: 23.55 kcal Atomic # 6 Polarization: -28.42 SS G_CDS: 2.38 Total: -26.03 kcal Atomic # 7 Polarization: -73.92 SS G_CDS: -1.65 Total: -75.57 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -1.98 Total: -25.15 kcal Atomic # 14 Polarization: 35.02 SS G_CDS: 2.03 Total: 37.05 kcal Atomic # 16 Polarization: 4.24 SS G_CDS: -1.14 Total: 3.10 kcal Total: -63.24 0.18 -63.06 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083117337.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.711 kcal (2) G-P(sol) polarization free energy of solvation -63.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds