Wall clock time and date at job start Mon Mar 30 2020 03:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 119.99702 * 2 1 4 4 H 1.48502 * 109.46880 * 269.99819 * 3 2 1 5 5 H 1.48499 * 109.47200 * 30.00019 * 3 2 1 6 6 H 1.48502 * 109.46838 * 149.99718 * 3 2 1 7 7 C 1.37870 * 120.00216 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00046 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99901 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.47121 * 180.02562 * 9 7 2 11 11 C 1.38314 * 119.99812 * 90.00015 * 10 9 7 12 12 N 1.31641 * 127.50680 * 354.78032 * 11 10 9 13 13 C 1.31285 * 116.79506 * 179.97438 * 12 11 10 14 14 N 1.30123 * 117.87378 * 359.97438 * 13 12 11 15 15 S 1.69946 * 105.76840 * 0.02562 * 14 13 12 16 16 C 1.46502 * 120.00203 * 270.00199 * 10 9 7 17 17 C 1.52996 * 117.49628 * 13.61841 * 16 10 9 18 18 C 1.52991 * 117.49632 * 304.99726 * 16 10 9 19 19 H 0.97006 * 120.00091 * 0.02562 * 1 2 3 20 20 H 1.08995 * 109.47223 * 60.00045 * 9 7 2 21 21 H 1.08997 * 109.47304 * 299.99797 * 9 7 2 22 22 H 1.07998 * 121.06264 * 180.02562 * 13 12 11 23 23 H 1.09004 * 115.54910 * 159.32691 * 16 10 9 24 24 H 1.08998 * 117.50067 * 359.97438 * 17 16 10 25 25 H 1.09001 * 117.49864 * 145.02197 * 17 16 10 26 26 H 1.09008 * 117.49833 * 214.97640 * 18 16 10 27 27 H 1.08997 * 117.50426 * 359.97438 * 18 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2031 -3.6126 0.0027 11 6 2.6525 -4.1371 1.2010 12 7 2.3998 -3.6943 2.4147 13 6 2.9384 -4.3584 3.4110 14 7 3.6732 -5.3936 3.1255 15 16 3.6641 -5.5130 1.4302 16 6 2.6792 -4.1705 -1.2655 17 6 2.4093 -3.3642 -2.5375 18 6 1.6257 -4.6499 -2.2660 19 1 -0.4850 0.8401 -0.0004 20 1 0.6241 -2.5575 -0.8880 21 1 0.6248 -2.5563 0.8919 22 1 2.7761 -4.0555 4.4349 23 1 3.6137 -4.7291 -1.2120 24 1 1.8773 -2.4189 -2.4308 25 1 3.1664 -3.3922 -3.3212 26 1 1.8673 -5.5238 -2.8712 27 1 0.5785 -4.5507 -1.9806 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083651350.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:05 Heat of formation + Delta-G solvation = 70.251129 kcal Electronic energy + Delta-G solvation = -13243.512193 eV Core-core repulsion = 10935.680216 eV Total energy + Delta-G solvation = -2307.831978 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.063 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.86542 -39.38040 -35.60947 -34.59074 -31.98937 -29.61719 -26.17041 -25.20253 -23.22489 -22.31045 -20.87742 -19.57769 -18.64554 -18.06113 -16.83531 -16.24822 -15.94567 -15.89894 -15.25224 -14.59369 -13.82372 -13.46018 -13.22169 -12.84514 -12.76107 -12.63877 -12.43121 -12.26484 -12.03495 -11.53684 -11.39912 -11.33009 -10.63996 -10.40581 -10.30951 -8.75540 -8.18085 -6.36160 -0.13421 0.08489 0.97306 1.37848 1.40337 1.49924 1.84328 1.94988 2.38244 2.95291 3.08062 3.51264 3.79090 3.97369 4.09126 4.50398 4.66441 4.81969 4.94870 4.98595 5.09969 5.21330 5.35903 5.59971 5.87927 6.00681 6.13440 6.70973 7.00717 7.32817 8.83567 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.025745 B = 0.010235 C = 0.008133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.336072 B = 2735.047368 C = 3441.839395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.018 3.982 3 Si 0.960 3.040 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.277 1.277 7 C -0.530 4.530 8 H 0.048 0.952 9 C 0.272 3.728 10 N -0.511 5.511 11 C 0.347 3.653 12 N -0.622 5.622 13 C 0.287 3.713 14 N -0.539 5.539 15 S 0.170 5.830 16 C 0.048 3.952 17 C -0.169 4.169 18 C -0.169 4.169 19 H 0.268 0.732 20 H 0.036 0.964 21 H 0.011 0.989 22 H 0.239 0.761 23 H 0.146 0.854 24 H 0.085 0.915 25 H 0.132 0.868 26 H 0.140 0.860 27 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.255 -8.587 -3.507 10.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.181 4.181 3 Si 0.786 3.214 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.202 1.202 7 C -0.569 4.569 8 H 0.067 0.933 9 C 0.150 3.850 10 N -0.222 5.222 11 C -0.030 4.030 12 N -0.360 5.360 13 C -0.023 4.023 14 N -0.374 5.374 15 S 0.302 5.698 16 C -0.056 4.056 17 C -0.207 4.207 18 C -0.208 4.208 19 H 0.077 0.923 20 H 0.053 0.947 21 H 0.029 0.971 22 H 0.255 0.745 23 H 0.163 0.837 24 H 0.104 0.896 25 H 0.150 0.850 26 H 0.158 0.842 27 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.750 -9.378 -3.495 11.542 hybrid contribution -0.546 2.021 0.611 2.181 sum 5.204 -7.357 -2.884 9.461 Atomic orbital electron populations 1.70020 1.07288 1.28166 1.50866 1.25657 0.95607 1.02390 0.94482 0.85522 0.78279 0.79004 0.78641 1.19094 1.20741 1.20192 1.21474 0.92890 0.91306 1.51226 0.93331 1.19017 0.86862 0.82334 0.96811 1.46197 1.43260 1.32909 0.99874 1.25464 0.93584 0.94032 0.89912 1.67572 1.34886 1.35841 0.97652 1.25255 0.89048 0.87040 1.00942 1.77533 1.31330 1.25573 1.02969 1.84235 1.50321 1.28638 1.06610 1.22104 1.00050 1.04046 0.79405 1.23420 1.03959 0.96368 0.96912 1.23525 0.96910 0.99287 1.01094 0.92346 0.94652 0.97087 0.74515 0.83699 0.89622 0.84972 0.84222 0.89925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.81 13.29 21.45 0.28 -52.53 15 2 C 0.02 1.00 5.46 84.65 0.46 1.46 15 3 Si 0.96 43.26 29.54 68.60 2.03 45.29 15 4 H -0.27 -11.33 7.11 99.48 0.71 -10.62 15 5 H -0.28 -12.50 7.11 99.48 0.71 -11.80 15 6 H -0.28 -12.52 7.11 99.48 0.71 -11.81 15 7 C -0.53 -28.61 8.92 25.60 0.23 -28.38 15 8 H 0.05 2.68 7.81 -2.91 -0.02 2.65 15 9 C 0.27 13.56 4.57 85.63 0.39 13.96 15 10 N -0.51 -21.08 2.90 -688.44 -2.00 -23.07 15 11 C 0.35 14.22 7.93 178.86 1.42 15.64 15 12 N -0.62 -26.98 10.16 -212.86 -2.16 -29.14 15 13 C 0.29 10.26 12.33 181.53 2.24 12.50 15 14 N -0.54 -19.17 12.20 -70.99 -0.87 -20.03 15 15 S 0.17 5.67 22.72 -56.49 -1.28 4.39 15 16 C 0.05 1.49 6.32 44.99 0.28 1.78 15 17 C -0.17 -4.92 9.72 30.59 0.30 -4.63 15 18 C -0.17 -4.36 10.02 30.59 0.31 -4.05 15 19 H 0.27 14.45 8.31 -92.70 -0.77 13.68 15 20 H 0.04 1.80 6.25 -2.39 -0.01 1.78 15 21 H 0.01 0.63 7.79 -2.39 -0.02 0.61 15 22 H 0.24 6.48 8.06 -2.91 -0.02 6.45 15 23 H 0.15 3.76 7.44 -2.39 -0.02 3.74 15 24 H 0.09 3.22 6.29 -2.39 -0.02 3.20 15 25 H 0.13 2.91 8.14 -2.39 -0.02 2.90 15 26 H 0.14 2.48 8.14 -2.38 -0.02 2.46 15 27 H 0.08 2.44 7.83 -2.39 -0.02 2.42 15 Total: -1.00 -63.96 253.45 2.81 -61.15 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: 1.18 Total: 5.67 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: 5.63 Total: 8.28 kcal Atomic # 7 Polarization: -120.03 SS G_CDS: -4.74 Total: -124.77 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 16 Polarization: 5.67 SS G_CDS: -1.28 Total: 4.39 kcal Total: -63.96 2.81 -61.15 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083651350.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.404 kcal (2) G-P(sol) polarization free energy of solvation -63.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds