Wall clock time and date at job start Mon Mar 30 2020 02:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31022 * 1 3 3 Si 1.86794 * 120.00520 * 2 1 4 4 H 1.48494 * 109.47362 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46949 * 300.00000 * 3 2 1 6 6 H 1.48494 * 109.47285 * 59.99532 * 3 2 1 7 7 C 1.39720 * 119.99420 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99831 * 186.19900 * 7 2 1 9 9 C 1.41160 * 120.00142 * 6.20184 * 7 2 1 10 10 C 1.37702 * 122.86112 * 174.08725 * 9 7 2 11 11 S 1.70988 * 108.83824 * 180.02562 * 10 9 7 12 12 C 1.75893 * 90.81250 * 359.97438 * 11 10 9 13 13 C 1.50697 * 124.99874 * 179.97438 * 12 11 10 14 14 H 1.08991 * 110.56853 * 182.70511 * 13 12 11 15 15 C 1.54512 * 110.50808 * 60.02350 * 13 12 11 16 16 C 1.54480 * 104.06589 * 241.35754 * 15 13 12 17 17 O 1.44433 * 104.80189 * 336.02549 * 16 15 13 18 18 C 1.44420 * 105.27432 * 40.51006 * 17 16 15 19 19 N 1.28804 * 110.01264 * 0.23081 * 12 11 10 20 20 H 0.97003 * 119.99693 * 0.02562 * 1 2 3 21 21 H 1.07998 * 125.57980 * 0.02562 * 10 9 7 22 22 H 1.08999 * 110.51037 * 0.02562 * 15 13 12 23 23 H 1.08997 * 110.50920 * 122.71288 * 15 13 12 24 24 H 1.09002 * 110.36943 * 94.85271 * 16 15 13 25 25 H 1.08992 * 110.37735 * 217.19291 * 16 15 13 26 26 H 1.09007 * 110.37001 * 200.65814 * 18 17 16 27 27 H 1.08997 * 110.47033 * 78.36701 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2443 1.6176 0.0000 4 1 3.7043 1.3462 0.0006 5 1 1.8856 2.3963 -1.2126 6 1 1.8856 2.3964 1.2124 7 6 2.0087 -1.2101 0.0005 8 1 3.0840 -1.2129 0.1015 9 6 1.3090 -2.4290 -0.1310 10 6 1.9432 -3.6448 -0.2566 11 16 0.7611 -4.8728 -0.3919 12 6 -0.5269 -3.6810 -0.2709 13 6 -2.0005 -3.9938 -0.3108 14 1 -2.5879 -3.0770 -0.2644 15 6 -2.3842 -4.9420 0.8473 16 6 -2.9193 -6.2050 0.1368 17 8 -3.3548 -5.7423 -1.1602 18 6 -2.3491 -4.7963 -1.5840 19 7 -0.0254 -2.5009 -0.1485 20 1 -0.4850 0.8401 -0.0004 21 1 3.0123 -3.7977 -0.2680 22 1 -1.5081 -5.1840 1.4489 23 1 -3.1613 -4.4938 1.4662 24 1 -2.1259 -6.9446 0.0291 25 1 -3.7584 -6.6254 0.6910 26 1 -2.7503 -4.1345 -2.3517 27 1 -1.4678 -5.3182 -1.9568 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083718264.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:33 Heat of formation + Delta-G solvation = -14.684726 kcal Electronic energy + Delta-G solvation = -13202.270157 eV Core-core repulsion = 10858.462333 eV Total energy + Delta-G solvation = -2343.807824 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.18492 -37.63174 -33.46752 -32.22617 -29.50375 -28.26567 -25.63101 -23.35848 -22.33161 -20.41935 -18.91552 -17.61351 -16.00496 -15.84048 -15.17825 -14.87023 -14.71324 -13.72008 -13.18255 -12.89374 -12.60560 -11.69149 -11.62590 -11.54766 -11.36430 -11.15562 -10.91904 -10.73305 -10.45499 -10.35025 -9.75762 -9.54328 -9.29229 -8.08441 -8.00987 -7.36514 -6.58333 -4.39402 2.22194 2.85505 3.01678 3.08183 3.13412 3.63002 3.97911 4.17975 4.23307 4.95438 4.97959 5.17463 5.31692 5.48631 5.54284 5.76324 5.88552 6.02158 6.10670 6.25524 6.44672 6.73953 6.98890 7.07470 7.21242 7.47126 8.16173 8.50478 8.84576 9.54768 10.29740 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.045633 B = 0.008056 C = 0.007238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.438982 B = 3474.878532 C = 3867.563859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.752 5.752 2 C 0.072 3.928 3 Si 0.912 3.088 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.432 4.432 8 H 0.085 0.915 9 C 0.224 3.776 10 C -0.455 4.455 11 S -0.041 6.041 12 C 0.062 3.938 13 C -0.035 4.035 14 H 0.106 0.894 15 C -0.147 4.147 16 C 0.046 3.954 17 O -0.378 6.378 18 C 0.053 3.947 19 N -0.394 5.394 20 H 0.274 0.726 21 H 0.137 0.863 22 H 0.083 0.917 23 H 0.078 0.922 24 H 0.060 0.940 25 H 0.089 0.911 26 H 0.095 0.905 27 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.466 -5.788 0.205 7.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.375 5.375 2 C -0.151 4.151 3 Si 0.736 3.264 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.199 1.199 7 C -0.466 4.466 8 H 0.103 0.897 9 C 0.103 3.897 10 C -0.594 4.594 11 S 0.207 5.793 12 C -0.222 4.222 13 C -0.058 4.058 14 H 0.124 0.876 15 C -0.186 4.186 16 C -0.031 4.031 17 O -0.297 6.297 18 C -0.025 4.025 19 N -0.107 5.107 20 H 0.084 0.916 21 H 0.155 0.845 22 H 0.102 0.898 23 H 0.097 0.903 24 H 0.078 0.922 25 H 0.107 0.893 26 H 0.113 0.887 27 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.100 -6.244 0.027 8.062 hybrid contribution 1.317 1.729 0.249 2.187 sum -3.783 -4.516 0.277 5.897 Atomic orbital electron populations 1.70117 1.07037 1.27995 1.32316 1.26000 0.94965 1.01125 0.92975 0.86206 0.80740 0.80974 0.78490 1.18471 1.19834 1.19906 1.19007 0.94559 0.88470 1.44583 0.89713 1.18028 0.85252 0.93190 0.93263 1.25095 1.01005 0.94395 1.38930 1.82550 1.02060 1.17120 1.77607 1.27526 0.97477 0.90991 1.06223 1.20938 0.89793 1.00124 0.94927 0.87623 1.23053 1.02097 0.95357 0.98096 1.23425 0.99370 0.96154 0.84178 1.89073 1.46226 1.60212 1.34144 1.23589 0.91953 0.90660 0.96308 1.67373 1.12488 1.19412 1.11434 0.91573 0.84488 0.89845 0.90298 0.92159 0.89283 0.88679 0.91474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -20.27 11.72 55.54 0.65 -19.62 15 2 C 0.07 1.87 5.48 -17.34 -0.10 1.77 15 3 Si 0.91 19.12 29.56 -169.99 -5.03 14.09 15 4 H -0.26 -5.39 7.11 56.52 0.40 -4.98 15 5 H -0.27 -5.63 7.11 56.52 0.40 -5.23 15 6 H -0.27 -5.62 7.11 56.52 0.40 -5.22 15 7 C -0.43 -11.98 9.23 -37.92 -0.35 -12.33 15 8 H 0.08 2.24 7.85 -52.48 -0.41 1.83 15 9 C 0.22 6.29 6.46 -86.16 -0.56 5.73 15 10 C -0.46 -11.71 10.98 30.54 0.34 -11.38 15 11 S -0.04 -0.89 22.16 -107.50 -2.38 -3.27 15 12 C 0.06 1.40 6.07 -13.55 -0.08 1.32 15 13 C -0.03 -0.63 3.64 -90.20 -0.33 -0.96 15 14 H 0.11 1.99 8.14 -51.93 -0.42 1.56 15 15 C -0.15 -2.24 6.68 -25.16 -0.17 -2.40 15 16 C 0.05 0.61 7.63 37.93 0.29 0.90 15 17 O -0.38 -5.96 11.65 -35.23 -0.41 -6.37 15 18 C 0.05 0.86 7.16 37.94 0.27 1.13 15 19 N -0.39 -10.64 8.49 -8.35 -0.07 -10.71 15 20 H 0.27 6.68 8.30 -40.82 -0.34 6.35 15 21 H 0.14 3.38 8.06 -52.49 -0.42 2.96 15 22 H 0.08 1.33 7.59 -51.93 -0.39 0.94 15 23 H 0.08 1.08 8.14 -51.93 -0.42 0.65 15 24 H 0.06 0.78 8.14 -51.93 -0.42 0.36 15 25 H 0.09 0.97 8.14 -51.93 -0.42 0.55 15 26 H 0.09 1.44 8.14 -51.93 -0.42 1.02 15 27 H 0.07 1.13 7.16 -51.93 -0.37 0.75 15 LS Contribution 247.90 15.07 3.74 3.74 Total: -1.00 -29.77 247.90 -7.04 -36.81 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -2.85 Total: 1.54 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: -0.68 Total: -16.21 kcal Atomic # 7 Polarization: -30.91 SS G_CDS: 0.58 Total: -30.33 kcal Atomic # 8 Polarization: -5.96 SS G_CDS: -0.41 Total: -6.37 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.03 Total: 14.09 kcal Atomic # 16 Polarization: -0.89 SS G_CDS: -2.38 Total: -3.27 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -29.77 -7.04 -36.81 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083718264.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.125 kcal (2) G-P(sol) polarization free energy of solvation -29.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds