Wall clock time and date at job start Mon Mar 30 2020 02:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31023 * 1 3 3 Si 1.86798 * 120.00151 * 2 1 4 4 H 1.48501 * 109.47072 * 84.67727 * 3 2 1 5 5 H 1.48499 * 109.47213 * 204.67384 * 3 2 1 6 6 H 1.48500 * 109.47360 * 324.67576 * 3 2 1 7 7 C 1.39719 * 119.99946 * 180.27186 * 2 1 3 8 8 H 1.07998 * 119.99902 * 18.69431 * 7 2 1 9 9 C 1.41152 * 120.00066 * 198.69301 * 7 2 1 10 10 C 1.37699 * 122.86482 * 22.64271 * 9 7 2 11 11 S 1.70992 * 108.83917 * 179.97438 * 10 9 7 12 12 C 1.75894 * 90.81332 * 359.97438 * 11 10 9 13 13 C 1.50688 * 124.99417 * 180.02562 * 12 11 10 14 14 H 1.09001 * 110.75424 * 181.98893 * 13 12 11 15 15 C 1.55304 * 110.85103 * 305.69177 * 13 12 11 16 16 C 1.54940 * 100.94493 * 152.32386 * 15 13 12 17 17 O 1.43645 * 105.13828 * 323.55363 * 16 15 13 18 18 C 1.43239 * 109.97091 * 24.42920 * 17 16 15 19 19 N 1.28801 * 110.01033 * 359.76817 * 12 11 10 20 20 H 0.96998 * 119.99757 * 185.40085 * 1 2 3 21 21 H 1.08000 * 125.57878 * 359.94051 * 10 9 7 22 22 H 1.09003 * 111.12189 * 270.24571 * 15 13 12 23 23 H 1.08997 * 111.12472 * 34.40228 * 15 13 12 24 24 H 1.09001 * 110.31045 * 204.63789 * 16 15 13 25 25 H 1.08998 * 110.31467 * 82.47239 * 16 15 13 26 26 H 1.08996 * 109.83082 * 238.77766 * 18 17 16 27 27 H 1.08997 * 109.83390 * 117.79960 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2443 1.6177 0.0000 4 1 2.3793 2.1113 1.3940 5 1 3.5935 1.4102 -0.5845 6 1 1.5026 2.6176 -0.8095 7 6 2.0088 -1.2100 -0.0057 8 1 1.5115 -2.1192 -0.3098 9 6 3.3645 -1.2441 0.3859 10 6 3.9342 -0.2830 1.1907 11 16 5.5804 -0.6743 1.4375 12 6 5.4130 -2.1149 0.4422 13 6 6.5209 -3.0912 0.1417 14 1 6.1710 -3.8790 -0.5254 15 6 7.7539 -2.3609 -0.4569 16 6 8.8996 -3.3033 -0.0097 17 8 8.5173 -3.7654 1.2956 18 6 7.0947 -3.6890 1.4443 19 7 4.2030 -2.2155 0.0123 20 1 -0.4850 -0.8363 0.0791 21 1 3.4248 0.5775 1.5988 22 1 7.6900 -2.3085 -1.5438 23 1 7.8706 -1.3675 -0.0238 24 1 9.8407 -2.7559 0.0434 25 1 8.9884 -4.1440 -0.6977 26 1 6.8452 -3.0454 2.2879 27 1 6.6856 -4.6865 1.6050 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083718266.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:35 Heat of formation + Delta-G solvation = -44.141974 kcal Electronic energy + Delta-G solvation = -13131.691592 eV Core-core repulsion = 10786.606407 eV Total energy + Delta-G solvation = -2345.085186 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.70533 -39.73589 -35.78269 -33.98624 -31.34149 -30.04764 -27.50331 -25.30293 -23.31764 -22.22522 -21.22845 -19.73756 -18.35586 -17.52453 -16.99093 -16.35371 -15.86870 -15.52592 -15.06411 -14.75264 -14.57883 -14.21288 -13.82583 -13.07991 -12.87255 -12.57464 -12.44780 -12.31903 -11.94260 -11.78859 -11.50776 -11.15195 -10.55088 -10.44811 -10.11107 -9.53650 -9.41263 -6.70871 0.06466 0.77167 1.26818 1.35197 1.41753 1.70579 1.96684 2.13823 2.81426 3.03529 3.19195 3.55363 3.87573 4.10733 4.19234 4.33546 4.58701 4.68296 4.77711 4.85919 4.91785 4.93995 5.01027 5.13571 5.43111 5.87372 5.96179 6.20091 6.50749 7.19446 7.90217 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.056845 B = 0.007913 C = 0.007522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.448511 B = 3537.745381 C = 3721.555485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.019 3.981 3 Si 1.107 2.893 4 H -0.262 1.262 5 H -0.265 1.265 6 H -0.276 1.276 7 C -0.514 4.514 8 H 0.048 0.952 9 C 0.195 3.805 10 C -0.476 4.476 11 S 0.082 5.918 12 C 0.086 3.914 13 C -0.046 4.046 14 H 0.114 0.886 15 C -0.146 4.146 16 C 0.054 3.946 17 O -0.395 6.395 18 C 0.065 3.935 19 N -0.511 5.511 20 H 0.280 0.720 21 H 0.148 0.852 22 H 0.105 0.895 23 H 0.081 0.919 24 H 0.110 0.890 25 H 0.082 0.918 26 H 0.068 0.932 27 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.004 -2.347 0.244 16.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.196 4.196 3 Si 0.928 3.072 4 H -0.188 1.188 5 H -0.189 1.189 6 H -0.202 1.202 7 C -0.549 4.549 8 H 0.066 0.934 9 C 0.073 3.927 10 C -0.614 4.614 11 S 0.332 5.668 12 C -0.196 4.196 13 C -0.069 4.069 14 H 0.132 0.868 15 C -0.184 4.184 16 C -0.022 4.022 17 O -0.315 6.315 18 C -0.013 4.013 19 N -0.227 5.227 20 H 0.090 0.910 21 H 0.166 0.834 22 H 0.123 0.877 23 H 0.099 0.901 24 H 0.128 0.872 25 H 0.100 0.900 26 H 0.086 0.914 27 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 16.412 -0.804 0.535 16.440 hybrid contribution -2.025 -1.757 -0.347 2.704 sum 14.387 -2.561 0.188 14.614 Atomic orbital electron populations 1.70675 1.08217 1.32212 1.35076 1.28180 0.95754 1.06314 0.89302 0.83109 0.74890 0.70532 0.78638 1.18821 1.18939 1.20232 1.19888 0.94151 0.97063 1.43847 0.93350 1.18160 0.94008 0.88062 0.92507 1.25629 1.00673 1.13242 1.21867 1.82314 1.08496 1.22988 1.52982 1.27972 0.95258 0.98117 0.98212 1.21460 0.91088 0.95305 0.99070 0.86768 1.23472 0.91868 0.99798 1.03302 1.23583 0.97928 0.96976 0.83696 1.88381 1.20997 1.87089 1.34993 1.23180 0.80977 1.01384 0.95743 1.67135 1.02639 1.28087 1.24854 0.91006 0.83446 0.87683 0.90074 0.87234 0.90018 0.91406 0.89684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -47.60 13.67 21.79 0.30 -47.30 15 2 C 0.02 1.08 5.46 85.17 0.46 1.55 15 3 Si 1.11 50.64 24.90 68.60 1.71 52.35 15 4 H -0.26 -11.14 6.71 99.48 0.67 -10.47 15 5 H -0.26 -12.06 6.65 99.48 0.66 -11.40 15 6 H -0.28 -11.86 7.11 99.48 0.71 -11.15 15 7 C -0.51 -30.38 9.76 23.34 0.23 -30.15 15 8 H 0.05 3.06 8.06 -2.91 -0.02 3.03 15 9 C 0.20 10.62 6.05 39.45 0.24 10.86 15 10 C -0.48 -23.38 8.22 67.69 0.56 -22.83 15 11 S 0.08 3.19 21.88 -56.49 -1.24 1.96 15 12 C 0.09 3.41 6.28 88.55 0.56 3.97 15 13 C -0.05 -1.34 3.51 -10.28 -0.04 -1.37 15 14 H 0.11 3.17 8.14 -2.39 -0.02 3.15 15 15 C -0.15 -3.22 6.59 32.05 0.21 -3.01 15 16 C 0.05 0.98 7.78 72.65 0.56 1.55 15 17 O -0.39 -9.76 11.36 -148.98 -1.69 -11.45 15 18 C 0.07 1.71 7.38 72.45 0.53 2.24 15 19 N -0.51 -25.42 10.65 -180.36 -1.92 -27.34 15 20 H 0.28 15.74 8.73 -92.71 -0.81 14.93 15 21 H 0.15 7.17 4.44 -2.91 -0.01 7.16 15 22 H 0.10 2.01 8.14 -2.39 -0.02 1.99 15 23 H 0.08 1.89 7.39 -2.39 -0.02 1.88 15 24 H 0.11 1.53 8.14 -2.39 -0.02 1.51 15 25 H 0.08 1.20 8.14 -2.39 -0.02 1.19 15 26 H 0.07 1.91 7.31 -2.39 -0.02 1.89 15 27 H 0.09 2.05 8.14 -2.39 -0.02 2.03 15 Total: -1.00 -64.78 240.57 1.53 -63.24 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: 1.06 Total: 5.74 kcal Atomic # 6 Polarization: -40.52 SS G_CDS: 3.32 Total: -37.20 kcal Atomic # 7 Polarization: -73.02 SS G_CDS: -1.62 Total: -74.64 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: -1.69 Total: -11.45 kcal Atomic # 14 Polarization: 50.64 SS G_CDS: 1.71 Total: 52.35 kcal Atomic # 16 Polarization: 3.19 SS G_CDS: -1.24 Total: 1.96 kcal Total: -64.78 1.53 -63.24 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083718266.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.102 kcal (2) G-P(sol) polarization free energy of solvation -64.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds