Wall clock time and date at job start Mon Mar 30 2020 03:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38163 * 120.03061 * 2 1 4 4 C 1.38250 * 120.09411 * 179.97438 * 3 2 1 5 5 C 1.38315 * 120.15889 * 0.02562 * 4 3 2 6 6 C 1.38165 * 120.06089 * 359.97438 * 5 4 3 7 7 Cl 1.73602 * 120.04917 * 180.02562 * 6 5 4 8 8 C 1.38836 * 120.03531 * 180.27155 * 2 1 3 9 9 N 1.39755 * 120.07631 * 0.03133 * 8 2 1 10 10 C 1.46903 * 110.99663 * 264.01879 * 9 8 2 11 11 C 1.50699 * 109.47061 * 183.53556 * 10 9 8 12 12 H 1.08001 * 119.99936 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99801 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00028 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99761 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47031 * 59.99960 * 15 13 11 17 17 H 1.48495 * 109.47070 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46941 * 299.99921 * 15 13 11 19 19 H 1.09008 * 109.46771 * 90.00365 * 1 2 3 20 20 H 1.08998 * 109.47213 * 209.99724 * 1 2 3 21 21 H 1.08998 * 109.47817 * 330.00697 * 1 2 3 22 22 H 1.07994 * 119.94994 * 359.97438 * 3 2 1 23 23 H 1.08000 * 119.91615 * 179.97438 * 4 3 2 24 24 H 1.07998 * 119.97237 * 179.97438 * 5 4 3 25 25 H 1.00901 * 111.00126 * 140.07650 * 9 8 2 26 26 H 1.08993 * 109.47858 * 303.54361 * 10 9 8 27 27 H 1.09005 * 109.46543 * 63.54088 * 10 9 8 28 28 H 0.96996 * 119.99825 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5809 1.1977 0.0005 5 6 4.2771 0.0025 0.0005 6 6 3.5922 -1.1974 0.0005 7 17 4.4664 -2.6973 0.0012 8 6 2.2019 -1.2019 -0.0057 9 7 1.5054 -2.4136 -0.0121 10 6 1.3664 -2.9480 1.3492 11 6 0.6890 -4.2930 1.2941 12 1 0.3919 -4.7094 0.3429 13 6 0.4486 -4.9920 2.4580 14 7 0.8099 -4.4847 3.6162 15 14 -0.3905 -6.6596 2.3895 16 1 0.4277 -7.5922 1.5735 17 1 -0.5322 -7.1992 3.7657 18 1 -1.7344 -6.5127 1.7751 19 1 -0.3633 -0.0001 -1.0278 20 1 -0.3633 -0.8900 0.5138 21 1 -0.3634 0.8900 0.5137 22 1 1.6581 2.1312 -0.0004 23 1 4.1185 2.1344 0.0001 24 1 5.3571 0.0073 0.0005 25 1 1.9519 -3.0840 -0.6198 26 1 2.3530 -3.0562 1.7997 27 1 0.7664 -2.2633 1.9487 28 1 0.6404 -4.9763 4.4351 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085388562.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:26 Heat of formation + Delta-G solvation = 8.649154 kcal Electronic energy + Delta-G solvation = -13086.915171 eV Core-core repulsion = 10742.075474 eV Total energy + Delta-G solvation = -2344.839697 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.35451 -36.07510 -35.11429 -32.58442 -31.99681 -29.16441 -26.91874 -25.63232 -22.36854 -21.65362 -20.53984 -17.01243 -16.13268 -15.69028 -15.13301 -14.71118 -13.91935 -13.63045 -13.02803 -12.85117 -12.56203 -12.13013 -12.08382 -11.61688 -11.15277 -11.10114 -10.89637 -10.80117 -10.72910 -10.45626 -10.06638 -9.32046 -8.61860 -8.31728 -8.27913 -7.44451 -6.05764 -4.08627 1.48734 1.62081 2.55293 3.32668 3.36554 3.39410 3.91762 4.41196 4.99437 5.08600 5.15461 5.30547 5.51169 5.63097 5.79044 6.06057 6.09612 6.15854 6.46688 6.60867 6.63206 6.87920 7.04769 7.33248 7.36009 7.75100 8.09013 8.16085 8.55055 8.98069 9.55733 11.05077 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.032815 B = 0.008415 C = 0.007250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.065105 B = 3326.469509 C = 3860.879293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.068 4.068 3 C -0.113 4.113 4 C -0.131 4.131 5 C -0.111 4.111 6 C -0.078 4.078 7 Cl -0.068 7.068 8 C 0.132 3.868 9 N -0.649 5.649 10 C 0.202 3.798 11 C -0.518 4.518 12 H 0.063 0.937 13 C 0.059 3.941 14 N -0.895 5.895 15 Si 0.900 3.100 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.276 1.276 19 H 0.066 0.934 20 H 0.087 0.913 21 H 0.055 0.945 22 H 0.123 0.877 23 H 0.124 0.876 24 H 0.124 0.876 25 H 0.345 0.655 26 H 0.002 0.998 27 H 0.030 0.970 28 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.449 9.504 -6.895 12.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.069 4.069 3 C -0.132 4.132 4 C -0.150 4.150 5 C -0.131 4.131 6 C -0.108 4.108 7 Cl -0.039 7.039 8 C 0.033 3.967 9 N -0.278 5.278 10 C 0.079 3.921 11 C -0.557 4.557 12 H 0.081 0.919 13 C -0.143 4.143 14 N -0.534 5.534 15 Si 0.727 3.273 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.201 1.201 19 H 0.084 0.916 20 H 0.106 0.894 21 H 0.074 0.926 22 H 0.141 0.859 23 H 0.142 0.858 24 H 0.142 0.858 25 H 0.166 0.834 26 H 0.020 0.980 27 H 0.048 0.952 28 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.870 9.558 -6.668 12.280 hybrid contribution 0.678 -1.335 0.259 1.519 sum 4.548 8.223 -6.409 11.375 Atomic orbital electron populations 1.20651 0.90195 1.03115 1.02106 1.19786 0.96835 0.90818 0.99494 1.21014 0.94080 0.97395 1.00719 1.20897 0.94206 0.97082 1.02778 1.20859 0.99796 0.90884 1.01519 1.21905 0.93153 0.87581 1.08114 1.98361 1.75849 1.32758 1.96939 1.18870 0.87922 0.93719 0.96170 1.58341 1.51167 1.03159 1.15147 1.19644 0.96371 0.94752 0.81336 1.21092 1.38994 1.02320 0.93290 0.91902 1.24952 0.95811 0.98228 0.95261 1.69954 1.47124 1.38576 0.97701 0.86534 0.80052 0.83714 0.76959 1.20224 1.21318 1.20104 0.91551 0.89435 0.92638 0.85857 0.85849 0.85806 0.83369 0.97985 0.95156 0.92758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.65 9.76 36.00 0.35 -1.30 15 2 C -0.07 -1.16 5.90 -104.43 -0.62 -1.78 15 3 C -0.11 -1.62 9.70 -39.60 -0.38 -2.00 15 4 C -0.13 -1.77 10.04 -39.55 -0.40 -2.17 15 5 C -0.11 -1.69 9.82 -39.58 -0.39 -2.08 15 6 C -0.08 -1.41 6.27 -39.31 -0.25 -1.66 15 7 Cl -0.07 -1.24 27.01 -51.86 -1.40 -2.64 15 8 C 0.13 2.57 5.26 -83.73 -0.44 2.13 15 9 N -0.65 -14.18 5.24 -59.49 -0.31 -14.49 15 10 C 0.20 5.28 5.05 -4.97 -0.03 5.25 15 11 C -0.52 -14.50 9.28 -34.44 -0.32 -14.82 15 12 H 0.06 1.72 7.81 -52.49 -0.41 1.31 15 13 C 0.06 1.69 5.46 -17.82 -0.10 1.59 15 14 N -0.89 -26.61 13.29 55.43 0.74 -25.88 15 15 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 15 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 17 H -0.29 -6.84 7.11 56.52 0.40 -6.44 15 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 19 H 0.07 0.96 8.14 -51.92 -0.42 0.53 15 20 H 0.09 1.66 6.91 -51.93 -0.36 1.30 15 21 H 0.05 0.74 8.09 -51.93 -0.42 0.32 15 22 H 0.12 1.40 8.06 -52.49 -0.42 0.97 15 23 H 0.12 1.27 8.06 -52.49 -0.42 0.84 15 24 H 0.12 1.60 8.06 -52.49 -0.42 1.18 15 25 H 0.35 7.42 7.69 -39.29 -0.30 7.11 15 26 H 0.00 0.06 7.43 -51.93 -0.39 -0.32 15 27 H 0.03 0.86 7.76 -51.93 -0.40 0.45 15 28 H 0.26 7.40 8.31 -40.82 -0.34 7.06 15 LS Contribution 259.24 15.07 3.91 3.91 Total: -1.00 -29.50 259.24 -7.76 -37.26 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -3.11 Total: 2.10 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: -2.56 Total: -16.83 kcal Atomic # 7 Polarization: -40.79 SS G_CDS: 0.42 Total: -40.37 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 17 Polarization: -1.24 SS G_CDS: -1.40 Total: -2.64 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -29.50 -7.76 -37.26 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085388562.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.907 kcal (2) G-P(sol) polarization free energy of solvation -29.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds