Wall clock time and date at job start Mon Mar 30 2020 03:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38163 * 120.03061 * 2 1 4 4 C 1.38250 * 120.09411 * 179.97438 * 3 2 1 5 5 C 1.38315 * 120.15889 * 0.02562 * 4 3 2 6 6 C 1.38165 * 120.06089 * 359.97438 * 5 4 3 7 7 Cl 1.73602 * 120.04917 * 180.02562 * 6 5 4 8 8 C 1.38836 * 120.03531 * 180.27155 * 2 1 3 9 9 N 1.39755 * 120.07631 * 0.03133 * 8 2 1 10 10 C 1.46903 * 110.99663 * 264.01879 * 9 8 2 11 11 C 1.50699 * 109.47061 * 183.53556 * 10 9 8 12 12 H 1.08001 * 119.99936 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99801 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00028 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99761 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47031 * 59.99960 * 15 13 11 17 17 H 1.48495 * 109.47070 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46941 * 299.99921 * 15 13 11 19 19 H 1.09008 * 109.46771 * 90.00365 * 1 2 3 20 20 H 1.08998 * 109.47213 * 209.99724 * 1 2 3 21 21 H 1.08998 * 109.47817 * 330.00697 * 1 2 3 22 22 H 1.07994 * 119.94994 * 359.97438 * 3 2 1 23 23 H 1.08000 * 119.91615 * 179.97438 * 4 3 2 24 24 H 1.07998 * 119.97237 * 179.97438 * 5 4 3 25 25 H 1.00901 * 111.00126 * 140.07650 * 9 8 2 26 26 H 1.08993 * 109.47858 * 303.54361 * 10 9 8 27 27 H 1.09005 * 109.46543 * 63.54088 * 10 9 8 28 28 H 0.96996 * 119.99825 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5809 1.1977 0.0005 5 6 4.2771 0.0025 0.0005 6 6 3.5922 -1.1974 0.0005 7 17 4.4664 -2.6973 0.0012 8 6 2.2019 -1.2019 -0.0057 9 7 1.5054 -2.4136 -0.0121 10 6 1.3664 -2.9480 1.3492 11 6 0.6890 -4.2930 1.2941 12 1 0.3919 -4.7094 0.3429 13 6 0.4486 -4.9920 2.4580 14 7 0.8099 -4.4847 3.6162 15 14 -0.3905 -6.6596 2.3895 16 1 0.4277 -7.5922 1.5735 17 1 -0.5322 -7.1992 3.7657 18 1 -1.7344 -6.5127 1.7751 19 1 -0.3633 -0.0001 -1.0278 20 1 -0.3633 -0.8900 0.5138 21 1 -0.3634 0.8900 0.5137 22 1 1.6581 2.1312 -0.0004 23 1 4.1185 2.1344 0.0001 24 1 5.3571 0.0073 0.0005 25 1 1.9519 -3.0840 -0.6198 26 1 2.3530 -3.0562 1.7997 27 1 0.7664 -2.2633 1.9487 28 1 0.6404 -4.9763 4.4351 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085388562.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:25 Heat of formation + Delta-G solvation = -8.953353 kcal Electronic energy + Delta-G solvation = -13087.678473 eV Core-core repulsion = 10742.075474 eV Total energy + Delta-G solvation = -2345.602999 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.67820 -37.44810 -36.77896 -34.57718 -33.32606 -30.72182 -28.51640 -27.21897 -24.21901 -23.08221 -21.88424 -18.88619 -17.68772 -17.12754 -16.68376 -16.46316 -15.48271 -15.00895 -14.48856 -14.29716 -14.23793 -13.86286 -13.39037 -13.32574 -12.82276 -12.73439 -12.35663 -12.29989 -12.20339 -12.06692 -11.84125 -11.38436 -10.69945 -9.88025 -9.55538 -9.07356 -8.23209 -6.34575 0.22674 0.35585 1.19749 1.40591 1.43919 1.51832 2.38949 2.68080 3.10592 3.46269 3.86609 4.08362 4.37698 4.39373 4.56214 4.75385 4.90735 4.92408 5.10910 5.21737 5.28333 5.36393 5.43894 5.57028 5.66023 5.91175 6.03129 6.29079 6.73484 6.82776 7.35282 8.88177 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.032815 B = 0.008415 C = 0.007250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.065105 B = 3326.469509 C = 3860.879293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.083 4.083 3 C -0.106 4.106 4 C -0.113 4.113 5 C -0.115 4.115 6 C -0.095 4.095 7 Cl -0.082 7.082 8 C 0.086 3.914 9 N -0.644 5.644 10 C 0.225 3.775 11 C -0.537 4.537 12 H 0.064 0.936 13 C 0.007 3.993 14 N -0.931 5.931 15 Si 0.971 3.029 16 H -0.268 1.268 17 H -0.282 1.282 18 H -0.266 1.266 19 H 0.079 0.921 20 H 0.047 0.953 21 H 0.082 0.918 22 H 0.162 0.838 23 H 0.169 0.831 24 H 0.147 0.853 25 H 0.343 0.657 26 H -0.026 1.026 27 H -0.001 1.001 28 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.611 11.007 -7.626 14.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.084 4.084 3 C -0.125 4.125 4 C -0.131 4.131 5 C -0.134 4.134 6 C -0.124 4.124 7 Cl -0.053 7.053 8 C -0.012 4.012 9 N -0.272 5.272 10 C 0.100 3.900 11 C -0.575 4.575 12 H 0.082 0.918 13 C -0.192 4.192 14 N -0.571 5.571 15 Si 0.795 3.205 16 H -0.193 1.193 17 H -0.208 1.208 18 H -0.191 1.191 19 H 0.097 0.903 20 H 0.066 0.934 21 H 0.101 0.899 22 H 0.179 0.821 23 H 0.186 0.814 24 H 0.165 0.835 25 H 0.163 0.837 26 H -0.008 1.008 27 H 0.018 0.982 28 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.041 11.085 -7.425 13.940 hybrid contribution 0.689 -1.635 0.462 1.834 sum 4.729 9.449 -6.963 12.655 Atomic orbital electron populations 1.20608 0.89837 1.02434 1.02728 1.20098 0.97475 0.91197 0.99634 1.21450 0.94723 0.97547 0.98753 1.21452 0.94103 0.98069 0.99468 1.21237 1.01154 0.90326 1.00686 1.22085 0.92841 0.88220 1.09226 1.98347 1.75897 1.33984 1.97065 1.19078 0.88859 0.93303 0.99913 1.58139 1.52411 1.03979 1.12645 1.19147 0.93892 0.93635 0.83313 1.21453 1.39197 1.03310 0.93560 0.91755 1.25886 0.96299 1.02297 0.94726 1.70086 1.48261 1.40320 0.98439 0.85411 0.79157 0.78670 0.77224 1.19311 1.20770 1.19116 0.90259 0.93406 0.89919 0.82054 0.81360 0.83507 0.83675 1.00792 0.98244 0.92579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.10 9.76 71.23 0.70 -2.40 15 2 C -0.08 -2.74 5.90 -19.74 -0.12 -2.86 15 3 C -0.11 -2.64 9.70 22.25 0.22 -2.43 15 4 C -0.11 -2.56 10.04 22.29 0.22 -2.34 15 5 C -0.11 -3.21 9.82 22.27 0.22 -2.99 15 6 C -0.09 -3.41 6.27 22.44 0.14 -3.27 15 7 Cl -0.08 -3.03 27.01 -2.72 -0.07 -3.11 15 8 C 0.09 3.40 5.26 38.21 0.20 3.60 15 9 N -0.64 -29.26 5.24 -342.13 -1.79 -31.06 15 10 C 0.23 12.33 5.05 85.56 0.43 12.76 15 11 C -0.54 -30.95 9.28 25.60 0.24 -30.72 15 12 H 0.06 3.60 7.81 -2.91 -0.02 3.57 15 13 C 0.01 0.38 5.46 84.66 0.46 0.84 15 14 N -0.93 -56.80 13.29 21.45 0.28 -56.52 15 15 Si 0.97 44.67 29.54 68.60 2.03 46.70 15 16 H -0.27 -11.90 7.11 99.48 0.71 -11.19 15 17 H -0.28 -12.66 7.11 99.48 0.71 -11.95 15 18 H -0.27 -11.78 7.11 99.48 0.71 -11.08 15 19 H 0.08 2.21 8.14 -2.38 -0.02 2.19 15 20 H 0.05 1.87 6.91 -2.39 -0.02 1.85 15 21 H 0.08 2.06 8.09 -2.39 -0.02 2.04 15 22 H 0.16 2.78 8.06 -2.91 -0.02 2.76 15 23 H 0.17 2.38 8.06 -2.91 -0.02 2.35 15 24 H 0.15 3.36 8.06 -2.91 -0.02 3.34 15 25 H 0.34 15.40 7.69 -89.69 -0.69 14.71 15 26 H -0.03 -1.52 7.43 -2.39 -0.02 -1.54 15 27 H 0.00 -0.03 7.76 -2.38 -0.02 -0.05 15 28 H 0.27 15.22 8.31 -92.71 -0.77 14.45 15 Total: -1.00 -65.97 259.24 3.63 -62.33 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: 0.48 Total: 11.46 kcal Atomic # 6 Polarization: -32.52 SS G_CDS: 2.71 Total: -29.81 kcal Atomic # 7 Polarization: -86.06 SS G_CDS: -1.51 Total: -87.57 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Atomic # 17 Polarization: -3.03 SS G_CDS: -0.07 Total: -3.11 kcal Total: -65.97 3.63 -62.33 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085388562.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.381 kcal (2) G-P(sol) polarization free energy of solvation -65.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds