Wall clock time and date at job start Mon Mar 30 2020 03:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35997 * 116.99606 * 2 1 4 4 C 1.38823 * 119.94041 * 0.24773 * 3 2 1 5 5 C 1.38227 * 120.19490 * 180.25603 * 4 3 2 6 6 C 1.38669 * 120.06595 * 359.49339 * 5 4 3 7 7 N 1.39967 * 120.06261 * 180.22859 * 6 5 4 8 8 C 1.39704 * 119.87397 * 0.25441 * 6 5 4 9 9 S 1.76201 * 120.09523 * 179.97438 * 8 6 5 10 10 C 1.76201 * 100.00356 * 186.93386 * 9 8 6 11 11 H 1.07995 * 119.99527 * 5.66262 * 10 9 8 12 12 C 1.38658 * 120.00062 * 185.67226 * 10 9 8 13 13 N 1.31669 * 120.00114 * 179.97438 * 12 10 9 14 14 Si 1.86798 * 119.99911 * 359.97438 * 12 10 9 15 15 H 1.48497 * 109.47289 * 90.00364 * 14 12 10 16 16 H 1.48504 * 109.46969 * 210.00388 * 14 12 10 17 17 H 1.48502 * 109.47299 * 329.99999 * 14 12 10 18 18 C 1.38519 * 119.93542 * 180.02562 * 3 2 1 19 19 H 1.08997 * 109.47010 * 60.00527 * 1 2 3 20 20 H 1.08997 * 109.46677 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.47281 * 299.99956 * 1 2 3 22 22 H 1.07997 * 119.90064 * 0.03072 * 4 3 2 23 23 H 1.07994 * 119.96529 * 179.77057 * 5 4 3 24 24 H 0.97008 * 119.99751 * 0.02562 * 7 6 5 25 25 H 0.96993 * 120.00101 * 180.02562 * 7 6 5 26 26 H 0.96999 * 120.00262 * 179.97438 * 13 12 10 27 27 H 1.08001 * 120.03418 * 0.02562 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2890 2.3752 0.0052 5 6 1.9110 3.6096 -0.0001 6 6 3.2953 3.6901 -0.0001 7 7 3.9250 4.9401 -0.0006 8 6 4.0603 2.5211 0.0000 9 16 5.8197 2.6165 -0.0006 10 6 6.2185 0.9130 -0.2098 11 1 5.4336 0.1923 -0.3846 12 6 7.5402 0.4980 -0.1497 13 7 7.8382 -0.7750 -0.3054 14 14 8.8979 1.7449 0.1524 15 1 9.1327 1.8771 1.6127 16 1 10.1459 1.2880 -0.5103 17 1 8.4945 3.0608 -0.4053 18 6 3.4297 1.2828 -0.0005 19 1 -0.3633 0.5137 -0.8900 20 1 -0.3632 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 0.2107 2.3156 0.0097 23 1 1.3181 4.5123 0.0002 24 1 3.3929 5.7512 -0.0006 25 1 4.8934 4.9953 -0.0009 26 1 8.7628 -1.0654 -0.2638 27 1 4.0175 0.3768 -0.0014 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086478308.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:05 Heat of formation + Delta-G solvation = -36.570828 kcal Electronic energy + Delta-G solvation = -12913.829876 eV Core-core repulsion = 10569.073000 eV Total energy + Delta-G solvation = -2344.756876 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.80517 -38.57276 -34.93038 -34.50370 -32.00733 -29.29296 -28.05154 -27.47378 -23.79327 -22.80169 -20.23663 -18.72885 -17.88944 -17.61593 -17.13608 -16.47080 -16.28275 -16.02537 -15.16502 -14.42630 -14.24983 -14.16795 -13.79182 -13.44124 -13.10098 -13.00287 -12.59686 -12.38225 -12.03833 -11.40278 -11.26947 -10.88369 -10.75057 -10.46894 -8.86578 -8.54919 -7.96240 -6.26537 0.40223 0.78108 1.05105 1.29989 1.40982 1.66697 2.17372 2.39934 2.74617 2.80145 2.95653 3.21609 3.99851 4.25303 4.37844 4.48989 4.60438 4.67880 4.76260 5.07165 5.22362 5.36197 5.51211 5.69167 5.79039 6.18800 6.56416 6.76239 6.84893 7.15710 8.57140 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.031531 B = 0.009321 C = 0.007238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.796107 B = 3003.251415 C = 3867.766774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.353 6.353 3 C 0.072 3.928 4 C -0.170 4.170 5 C -0.142 4.142 6 C 0.182 3.818 7 N -0.866 5.866 8 C -0.129 4.129 9 S -0.047 6.047 10 C -0.552 4.552 11 H 0.071 0.929 12 C 0.042 3.958 13 N -0.915 5.915 14 Si 0.922 3.078 15 H -0.257 1.257 16 H -0.259 1.259 17 H -0.224 1.224 18 C -0.153 4.153 19 H 0.066 0.934 20 H 0.111 0.889 21 H 0.066 0.934 22 H 0.160 0.840 23 H 0.163 0.837 24 H 0.411 0.589 25 H 0.397 0.603 26 H 0.279 0.721 27 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.432 10.666 1.053 16.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.268 6.268 3 C 0.025 3.975 4 C -0.193 4.193 5 C -0.167 4.167 6 C 0.072 3.928 7 N -0.410 5.410 8 C -0.247 4.247 9 S 0.200 5.800 10 C -0.699 4.699 11 H 0.089 0.911 12 C -0.164 4.164 13 N -0.552 5.552 14 Si 0.742 3.258 15 H -0.182 1.182 16 H -0.184 1.184 17 H -0.147 1.147 18 C -0.179 4.179 19 H 0.084 0.916 20 H 0.129 0.871 21 H 0.085 0.915 22 H 0.177 0.823 23 H 0.181 0.819 24 H 0.242 0.758 25 H 0.226 0.774 26 H 0.089 0.911 27 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -11.296 11.210 1.143 15.956 hybrid contribution 0.055 -1.264 -0.076 1.267 sum -11.241 9.947 1.067 15.048 Atomic orbital electron populations 1.23277 0.76721 1.05045 1.02268 1.86049 1.23402 1.27419 1.89892 1.18747 0.91046 0.85284 1.02468 1.21191 1.00602 0.90646 1.06850 1.20594 0.90946 0.98671 1.06454 1.17434 0.91946 0.84878 0.98592 1.42274 1.09320 1.03664 1.85722 1.21437 0.98099 0.94606 1.10558 1.81862 0.97511 1.11738 1.88849 1.22895 0.97271 0.92703 1.56998 0.91115 1.25801 1.00520 0.97412 0.92640 1.70056 1.20884 1.16511 1.47713 0.85800 0.78918 0.80705 0.80333 1.18174 1.18366 1.14747 1.20421 0.92907 0.97392 1.07155 0.91588 0.87066 0.91495 0.82288 0.81936 0.75796 0.77442 0.91148 0.87741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 9.81 113.37 1.11 1.59 15 2 O -0.35 -13.01 10.50 -93.52 -0.98 -13.99 15 3 C 0.07 2.82 6.68 22.48 0.15 2.97 15 4 C -0.17 -5.10 9.03 22.41 0.20 -4.90 15 5 C -0.14 -4.04 9.88 22.37 0.22 -3.82 15 6 C 0.18 6.35 6.77 38.30 0.26 6.61 15 7 N -0.87 -23.90 9.04 -50.85 -0.46 -24.36 15 8 C -0.13 -5.83 6.11 22.80 0.14 -5.69 15 9 S -0.05 -2.30 18.14 -56.49 -1.02 -3.32 15 10 C -0.55 -33.02 9.53 67.92 0.65 -32.38 15 11 H 0.07 4.68 5.20 -2.91 -0.02 4.67 15 12 C 0.04 2.45 5.50 84.82 0.47 2.92 15 13 N -0.91 -56.54 13.97 21.62 0.30 -56.24 15 14 Si 0.92 42.74 27.73 68.60 1.90 44.64 15 15 H -0.26 -11.54 7.11 99.48 0.71 -10.83 15 16 H -0.26 -11.40 7.11 99.48 0.71 -10.69 15 17 H -0.22 -9.69 6.74 99.48 0.67 -9.02 15 18 C -0.15 -7.32 9.16 22.51 0.21 -7.11 15 19 H 0.07 1.25 7.67 -2.39 -0.02 1.23 15 20 H 0.11 2.01 8.14 -2.39 -0.02 1.99 15 21 H 0.07 1.25 7.64 -2.39 -0.02 1.24 15 22 H 0.16 3.39 6.28 -2.91 -0.02 3.37 15 23 H 0.16 3.14 8.06 -2.91 -0.02 3.12 15 24 H 0.41 7.88 8.85 -92.70 -0.82 7.06 15 25 H 0.40 11.62 7.38 -92.71 -0.68 10.94 15 26 H 0.28 15.79 8.31 -92.71 -0.77 15.02 15 27 H 0.10 5.89 5.03 -2.91 -0.01 5.88 15 Total: -1.00 -71.95 245.36 2.82 -69.12 By element: Atomic # 1 Polarization: 24.28 SS G_CDS: -0.32 Total: 23.97 kcal Atomic # 6 Polarization: -43.21 SS G_CDS: 3.40 Total: -39.80 kcal Atomic # 7 Polarization: -80.45 SS G_CDS: -0.16 Total: -80.60 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: -0.98 Total: -13.99 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 1.90 Total: 44.64 kcal Atomic # 16 Polarization: -2.30 SS G_CDS: -1.02 Total: -3.32 kcal Total: -71.95 2.82 -69.12 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086478308.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.551 kcal (2) G-P(sol) polarization free energy of solvation -71.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds