Wall clock time and date at job start Mon Mar 30 2020 02:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31569 * 1 3 3 Si 1.86805 * 119.99560 * 2 1 4 4 H 1.48497 * 109.47195 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47085 * 300.00222 * 3 2 1 6 6 H 1.48501 * 109.47295 * 59.99783 * 3 2 1 7 7 C 1.38792 * 120.00416 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00043 * 179.97438 * 7 2 1 9 9 S 1.76196 * 120.00182 * 0.02562 * 7 2 1 10 10 C 1.76197 * 100.00397 * 185.10975 * 9 7 2 11 11 C 1.39586 * 120.84728 * 265.46025 * 10 9 7 12 12 C 1.38233 * 119.25626 * 179.97438 * 11 10 9 13 13 N 1.31646 * 121.01105 * 0.02562 * 12 11 10 14 14 C 1.32900 * 121.85422 * 359.65320 * 13 12 11 15 15 C 1.48064 * 119.68679 * 180.33828 * 14 13 12 16 16 O 1.21429 * 120.00183 * 180.29587 * 15 14 13 17 17 O 1.34681 * 119.99980 * 0.29680 * 15 14 13 18 18 C 1.39059 * 120.62801 * 0.64049 * 14 13 12 19 19 H 0.96993 * 120.00744 * 359.97438 * 1 2 3 20 20 H 1.08005 * 120.37396 * 359.94758 * 11 10 9 21 21 H 1.08004 * 119.49277 * 179.97438 * 12 11 10 22 22 H 0.96701 * 116.99999 * 179.97438 * 17 15 14 23 23 H 1.08003 * 120.52475 * 179.68423 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6179 0.0000 4 1 3.7096 1.3466 -0.0006 5 1 1.8907 2.3966 -1.2125 6 1 1.8908 2.3966 1.2125 7 6 2.0097 -1.2019 -0.0005 8 1 3.0898 -1.2018 -0.0010 9 16 1.1289 -2.7279 -0.0019 10 6 2.4727 -3.8571 0.1524 11 6 3.0502 -4.4409 -0.9763 12 6 4.1034 -5.3220 -0.8172 13 7 4.5662 -5.6167 0.3794 14 6 4.0524 -5.0809 1.4818 15 6 4.6152 -5.4408 2.8031 16 8 4.1466 -4.9588 3.8144 17 8 5.6469 -6.3027 2.8835 18 6 2.9870 -4.1903 1.4064 19 1 -0.4851 0.8399 0.0004 20 1 2.6782 -4.2071 -1.9630 21 1 4.5528 -5.7762 -1.6879 22 1 5.9806 -6.5068 3.7679 23 1 2.5674 -3.7598 2.3037 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086502504.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:17 Heat of formation + Delta-G solvation = -59.969186 kcal Electronic energy + Delta-G solvation = -12399.366358 eV Core-core repulsion = 9917.761758 eV Total energy + Delta-G solvation = -2481.604600 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 225.025 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.42588 -39.03248 -36.03229 -32.66071 -32.16284 -31.32249 -25.75452 -25.16655 -23.34569 -21.55468 -18.55513 -17.86387 -17.24439 -16.09427 -15.64098 -15.52494 -14.97779 -14.68326 -13.93625 -13.52901 -13.25572 -12.88364 -11.72059 -11.51294 -11.40744 -11.19871 -11.06436 -10.77696 -10.28299 -9.90365 -9.31272 -9.25438 -9.02690 -8.44376 -6.91426 -6.43453 -4.19827 0.75910 1.38921 2.55888 2.87535 3.10226 3.12401 3.20542 3.30135 3.94802 4.11937 4.46544 4.94121 5.14692 5.26135 5.28189 5.40465 5.69244 5.88156 5.96808 6.41474 6.52281 6.77039 7.43783 7.76552 8.10511 8.17884 9.02866 10.63618 Molecular weight = 225.02amu Principal moments of inertia in cm(-1) A = 0.033999 B = 0.007610 C = 0.007031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.355275 B = 3678.427963 C = 3981.312166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.076 3.924 3 Si 0.924 3.076 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.527 4.527 8 H 0.078 0.922 9 S -0.016 6.016 10 C -0.068 4.068 11 C -0.102 4.102 12 C 0.081 3.919 13 N -0.441 5.441 14 C 0.066 3.934 15 C 0.546 3.454 16 O -0.508 6.508 17 O -0.496 6.496 18 C -0.065 4.065 19 H 0.272 0.728 20 H 0.148 0.852 21 H 0.162 0.838 22 H 0.408 0.592 23 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.217 -8.539 0.362 11.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.134 4.134 3 Si 0.750 3.250 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.674 4.674 8 H 0.096 0.904 9 S 0.219 5.781 10 C -0.187 4.187 11 C -0.125 4.125 12 C -0.081 4.081 13 N -0.153 5.153 14 C -0.071 4.071 15 C 0.388 3.612 16 O -0.395 6.395 17 O -0.306 6.306 18 C -0.088 4.088 19 H 0.082 0.918 20 H 0.165 0.835 21 H 0.180 0.820 22 H 0.265 0.735 23 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 6.281 -8.940 0.294 10.929 hybrid contribution 1.370 1.643 0.617 2.227 sum 7.651 -7.296 0.911 10.611 Atomic orbital electron populations 1.69950 1.05976 1.27956 1.46289 1.25023 0.95162 0.99253 0.93963 0.86017 0.79705 0.81190 0.78121 1.19419 1.20294 1.20280 1.22883 0.94973 0.89840 1.59722 0.90363 1.83712 1.02844 0.96874 1.94715 1.23431 1.01657 1.00210 0.93373 1.23072 0.94439 0.94707 1.00245 1.22776 0.94693 0.96224 0.94366 1.67575 1.27571 1.21845 0.98334 1.19905 0.97081 0.99760 0.90350 1.20606 0.76878 0.75257 0.88454 1.90906 1.59855 1.52039 1.36710 1.84700 1.47413 1.59636 1.38846 1.22813 0.92921 0.93328 0.99730 0.91820 0.83459 0.82048 0.73472 0.82972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.44 13.22 55.49 0.73 -23.71 14 2 C 0.08 2.05 5.49 -17.46 -0.10 1.95 14 3 Si 0.92 20.73 29.55 -169.99 -5.02 15.71 14 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 14 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 14 6 H -0.28 -6.14 7.11 56.52 0.40 -5.74 14 7 C -0.53 -14.26 9.47 30.94 0.29 -13.96 14 8 H 0.08 2.10 7.79 -52.48 -0.41 1.70 14 9 S -0.02 -0.39 21.48 -107.50 -2.31 -2.70 14 10 C -0.07 -1.39 5.50 -38.58 -0.21 -1.60 14 11 C -0.10 -1.73 9.91 -39.08 -0.39 -2.11 14 12 C 0.08 1.23 11.17 -17.63 -0.20 1.03 14 13 N -0.44 -7.53 10.12 -9.91 -0.10 -7.63 14 14 C 0.07 1.19 6.74 -83.07 -0.56 0.63 14 15 C 0.55 8.99 8.32 34.76 0.29 9.28 14 16 O -0.51 -9.33 17.10 -19.21 -0.33 -9.65 14 17 O -0.50 -6.40 13.24 -40.44 -0.54 -6.94 14 18 C -0.06 -1.27 9.43 -38.78 -0.37 -1.64 14 19 H 0.27 7.12 8.31 -40.82 -0.34 6.78 14 20 H 0.15 2.22 8.06 -52.48 -0.42 1.79 14 21 H 0.16 1.77 8.06 -52.48 -0.42 1.35 14 22 H 0.41 2.97 9.11 45.56 0.42 3.39 14 23 H 0.15 3.07 7.64 -52.48 -0.40 2.67 14 LS Contribution 241.03 15.07 3.63 3.63 Total: -1.00 -31.49 241.03 -5.54 -37.03 By element: Atomic # 1 Polarization: 1.05 SS G_CDS: -0.38 Total: 0.67 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -1.24 Total: -6.42 kcal Atomic # 7 Polarization: -31.97 SS G_CDS: 0.63 Total: -31.33 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -0.86 Total: -16.59 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: -0.39 SS G_CDS: -2.31 Total: -2.70 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -31.49 -5.54 -37.03 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086502504.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.937 kcal (2) G-P(sol) polarization free energy of solvation -31.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds