Wall clock time and date at job start Mon Mar 30 2020 02:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31569 * 1 3 3 Si 1.86805 * 119.99560 * 2 1 4 4 H 1.48497 * 109.47195 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47085 * 300.00222 * 3 2 1 6 6 H 1.48501 * 109.47295 * 59.99783 * 3 2 1 7 7 C 1.38792 * 120.00416 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00043 * 179.97438 * 7 2 1 9 9 S 1.76196 * 120.00182 * 0.02562 * 7 2 1 10 10 C 1.76197 * 100.00397 * 185.10975 * 9 7 2 11 11 C 1.39586 * 120.84728 * 265.46025 * 10 9 7 12 12 C 1.38233 * 119.25626 * 179.97438 * 11 10 9 13 13 N 1.31646 * 121.01105 * 0.02562 * 12 11 10 14 14 C 1.32900 * 121.85422 * 359.65320 * 13 12 11 15 15 C 1.48064 * 119.68679 * 180.33828 * 14 13 12 16 16 O 1.21429 * 120.00183 * 180.29587 * 15 14 13 17 17 O 1.34681 * 119.99980 * 0.29680 * 15 14 13 18 18 C 1.39059 * 120.62801 * 0.64049 * 14 13 12 19 19 H 0.96993 * 120.00744 * 359.97438 * 1 2 3 20 20 H 1.08005 * 120.37396 * 359.94758 * 11 10 9 21 21 H 1.08004 * 119.49277 * 179.97438 * 12 11 10 22 22 H 0.96701 * 116.99999 * 179.97438 * 17 15 14 23 23 H 1.08003 * 120.52475 * 179.68423 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6179 0.0000 4 1 3.7096 1.3466 -0.0006 5 1 1.8907 2.3966 -1.2125 6 1 1.8908 2.3966 1.2125 7 6 2.0097 -1.2019 -0.0005 8 1 3.0898 -1.2018 -0.0010 9 16 1.1289 -2.7279 -0.0019 10 6 2.4727 -3.8571 0.1524 11 6 3.0502 -4.4409 -0.9763 12 6 4.1034 -5.3220 -0.8172 13 7 4.5662 -5.6167 0.3794 14 6 4.0524 -5.0809 1.4818 15 6 4.6152 -5.4408 2.8031 16 8 4.1466 -4.9588 3.8144 17 8 5.6469 -6.3027 2.8835 18 6 2.9870 -4.1903 1.4064 19 1 -0.4851 0.8399 0.0004 20 1 2.6782 -4.2071 -1.9630 21 1 4.5528 -5.7762 -1.6879 22 1 5.9806 -6.5068 3.7679 23 1 2.5674 -3.7598 2.3037 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086502504.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:17 Heat of formation + Delta-G solvation = -82.173870 kcal Electronic energy + Delta-G solvation = -12400.329225 eV Core-core repulsion = 9917.761758 eV Total energy + Delta-G solvation = -2482.567467 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 225.025 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.74371 -40.35019 -37.22548 -34.70934 -33.59838 -32.69242 -27.81660 -26.52495 -24.75518 -22.87114 -20.19247 -19.32673 -18.73573 -17.46081 -16.97317 -16.91423 -16.90176 -16.23325 -15.40576 -14.93168 -14.59813 -14.47909 -13.42352 -13.12786 -12.99216 -12.89640 -12.68232 -12.09514 -12.02258 -11.55660 -11.26984 -10.73963 -10.38773 -10.21797 -8.90123 -8.45573 -6.26525 -0.62933 -0.06667 1.19217 1.30796 1.36533 1.41455 1.53143 1.83008 2.18172 2.65007 2.90019 3.23546 3.31789 3.81656 3.92299 3.98280 4.39774 4.53579 4.62018 5.08460 5.34749 5.35450 5.45220 6.10968 6.53476 6.92282 6.96716 8.62485 Molecular weight = 225.02amu Principal moments of inertia in cm(-1) A = 0.033999 B = 0.007610 C = 0.007031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.355275 B = 3678.427963 C = 3981.312166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.025 3.975 3 Si 0.992 3.008 4 H -0.267 1.267 5 H -0.266 1.266 6 H -0.272 1.272 7 C -0.543 4.543 8 H 0.071 0.929 9 S -0.061 6.061 10 C -0.087 4.087 11 C -0.095 4.095 12 C 0.100 3.900 13 N -0.440 5.440 14 C 0.062 3.938 15 C 0.553 3.447 16 O -0.534 6.534 17 O -0.484 6.484 18 C -0.080 4.080 19 H 0.276 0.724 20 H 0.167 0.833 21 H 0.215 0.785 22 H 0.434 0.566 23 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.186 -9.236 -0.472 13.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.181 4.181 3 Si 0.814 3.186 4 H -0.191 1.191 5 H -0.191 1.191 6 H -0.197 1.197 7 C -0.691 4.691 8 H 0.089 0.911 9 S 0.174 5.826 10 C -0.205 4.205 11 C -0.117 4.117 12 C -0.062 4.062 13 N -0.152 5.152 14 C -0.075 4.075 15 C 0.396 3.604 16 O -0.424 6.424 17 O -0.297 6.297 18 C -0.104 4.104 19 H 0.086 0.914 20 H 0.185 0.815 21 H 0.231 0.769 22 H 0.296 0.704 23 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 8.271 -9.669 -0.523 12.734 hybrid contribution 0.848 1.690 0.849 2.073 sum 9.119 -7.979 0.326 12.121 Atomic orbital electron populations 1.70052 1.07477 1.29072 1.47198 1.25966 0.96013 1.02780 0.93338 0.84997 0.78313 0.76732 0.78559 1.19075 1.19079 1.19725 1.23113 0.94833 0.91322 1.59788 0.91101 1.83610 1.06202 0.97711 1.95069 1.23169 1.01597 1.00669 0.95112 1.23311 0.94397 0.94118 0.99881 1.23549 0.93057 0.94399 0.95167 1.67723 1.27362 1.21509 0.98632 1.20013 0.96544 0.99262 0.91659 1.20316 0.77242 0.75350 0.87449 1.90902 1.60894 1.53212 1.37356 1.84626 1.45784 1.58083 1.41184 1.22610 0.94157 0.94659 0.98935 0.91425 0.81544 0.76873 0.70417 0.84729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.72 13.22 21.64 0.29 -51.44 14 2 C 0.03 1.37 5.49 84.86 0.47 1.84 14 3 Si 0.99 42.54 29.55 68.60 2.03 44.56 14 4 H -0.27 -11.15 7.11 99.48 0.71 -10.44 14 5 H -0.27 -10.83 7.11 99.48 0.71 -10.12 14 6 H -0.27 -11.35 7.11 99.48 0.71 -10.64 14 7 C -0.54 -29.97 9.47 67.95 0.64 -29.32 14 8 H 0.07 3.88 7.79 -2.91 -0.02 3.85 14 9 S -0.06 -3.06 21.48 -56.49 -1.21 -4.27 14 10 C -0.09 -3.54 5.50 22.92 0.13 -3.42 14 11 C -0.09 -3.01 9.91 22.59 0.22 -2.79 14 12 C 0.10 2.64 11.17 84.72 0.95 3.59 14 13 N -0.44 -13.71 10.12 -185.26 -1.87 -15.58 14 14 C 0.06 2.15 6.74 41.79 0.28 2.43 14 15 C 0.55 17.50 8.32 70.43 0.59 18.09 14 16 O -0.53 -19.44 17.10 20.07 0.34 -19.10 14 17 O -0.48 -11.17 13.24 -55.90 -0.74 -11.91 14 18 C -0.08 -3.19 9.43 22.79 0.21 -2.98 14 19 H 0.28 14.65 8.31 -92.71 -0.77 13.88 14 20 H 0.17 4.61 8.06 -2.91 -0.02 4.58 14 21 H 0.21 3.40 8.06 -2.91 -0.02 3.38 14 22 H 0.43 5.02 9.11 -74.06 -0.67 4.34 14 23 H 0.13 5.72 7.64 -2.91 -0.02 5.70 14 Total: -1.00 -68.67 241.03 2.90 -65.77 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: 0.58 Total: 4.53 kcal Atomic # 6 Polarization: -16.05 SS G_CDS: 3.49 Total: -12.56 kcal Atomic # 7 Polarization: -65.43 SS G_CDS: -1.59 Total: -67.02 kcal Atomic # 8 Polarization: -30.61 SS G_CDS: -0.40 Total: -31.01 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.56 kcal Atomic # 16 Polarization: -3.06 SS G_CDS: -1.21 Total: -4.27 kcal Total: -68.67 2.90 -65.77 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086502504.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.407 kcal (2) G-P(sol) polarization free energy of solvation -68.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds