Wall clock time and date at job start Mon Mar 30 2020 03:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35917 * 116.99776 * 2 1 4 4 C 1.38402 * 120.06141 * 359.97428 * 3 2 1 5 5 C 1.38906 * 119.96710 * 180.02562 * 4 3 2 6 6 N 1.39732 * 119.96092 * 179.97438 * 5 4 3 7 7 C 1.39050 * 120.08239 * 359.97438 * 5 4 3 8 8 C 1.37990 * 120.11241 * 359.78935 * 7 5 4 9 9 C 1.39025 * 120.03712 * 0.46648 * 8 7 5 10 10 S 1.76195 * 120.03936 * 179.79233 * 9 8 7 11 11 C 1.76201 * 100.00107 * 353.02189 * 10 9 8 12 12 H 1.08000 * 120.00151 * 354.32335 * 11 10 9 13 13 C 1.38618 * 119.99700 * 174.31857 * 11 10 9 14 14 N 1.31701 * 120.00398 * 0.27769 * 13 11 10 15 15 Si 1.86808 * 119.99767 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.46852 * 90.00178 * 15 13 11 17 17 H 1.48498 * 109.46944 * 210.00247 * 15 13 11 18 18 H 1.48503 * 109.46974 * 330.00069 * 15 13 11 19 19 H 1.09006 * 109.46729 * 180.02562 * 1 2 3 20 20 H 1.09004 * 109.47127 * 299.99816 * 1 2 3 21 21 H 1.08998 * 109.46891 * 60.00398 * 1 2 3 22 22 H 1.07994 * 120.01537 * 0.02562 * 4 3 2 23 23 H 0.96998 * 119.99717 * 0.02562 * 6 5 4 24 24 H 0.97000 * 119.99573 * 180.02562 * 6 5 4 25 25 H 1.07998 * 119.94057 * 180.02562 * 7 5 4 26 26 H 1.08007 * 119.97730 * 180.22837 * 8 7 5 27 27 H 0.96998 * 119.99961 * 359.71982 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2934 2.3726 -0.0005 5 6 1.9260 3.6092 -0.0011 6 7 1.1661 4.7818 -0.0022 7 6 3.3147 3.6818 -0.0005 8 6 4.0683 2.5258 0.0049 9 6 3.4402 1.2856 0.0001 10 16 4.4024 -0.1904 0.0015 11 6 6.0132 0.4942 -0.2013 12 1 6.1318 1.5536 -0.3750 13 6 7.1283 -0.3268 -0.1378 14 7 6.9834 -1.6195 0.0687 15 14 8.8361 0.3992 -0.3521 16 1 9.3697 0.8084 0.9719 17 1 9.7343 -0.6182 -0.9549 18 1 8.7618 1.5844 -1.2438 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 0.2149 2.3175 -0.0005 23 1 0.1974 4.7319 -0.0022 24 1 1.6073 5.6456 -0.0029 25 1 3.8041 4.6445 -0.0005 26 1 5.1467 2.5847 0.0091 27 1 6.0967 -1.9964 0.1804 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086829528.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:07 Heat of formation + Delta-G solvation = -41.753099 kcal Electronic energy + Delta-G solvation = -12913.901046 eV Core-core repulsion = 10568.919449 eV Total energy + Delta-G solvation = -2344.981596 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.91441 -38.59932 -35.12785 -34.79721 -31.10617 -29.89432 -28.08372 -26.96881 -23.25891 -23.11193 -20.52012 -19.13702 -17.98752 -17.70031 -16.60139 -16.28173 -16.27526 -15.78191 -15.44134 -14.96036 -14.34584 -14.06559 -13.72971 -13.22057 -12.81885 -12.51361 -12.44214 -12.24774 -11.93775 -11.59845 -11.39655 -10.98367 -10.37911 -9.43509 -9.37816 -8.92787 -7.97351 -6.21675 0.51348 0.63920 1.44255 1.59102 1.64580 1.80219 2.33700 2.47762 2.87079 3.03336 3.06632 3.15935 3.95923 4.24960 4.28569 4.40927 4.49022 4.70033 4.76149 4.82932 5.13439 5.32759 5.56442 5.69675 5.85248 6.15804 6.44658 6.67438 7.03158 7.09740 8.48771 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.033725 B = 0.008659 C = 0.006926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.052719 B = 3232.968110 C = 4041.979457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.336 6.336 3 C 0.158 3.842 4 C -0.268 4.268 5 C 0.236 3.764 6 N -0.859 5.859 7 C -0.217 4.217 8 C -0.071 4.071 9 C -0.184 4.184 10 S -0.093 6.093 11 C -0.622 4.622 12 H 0.087 0.913 13 C -0.015 4.015 14 N -0.912 5.912 15 Si 1.136 2.864 16 H -0.266 1.266 17 H -0.277 1.277 18 H -0.264 1.264 19 H 0.113 0.887 20 H 0.067 0.933 21 H 0.067 0.933 22 H 0.157 0.843 23 H 0.408 0.592 24 H 0.408 0.592 25 H 0.142 0.858 26 H 0.123 0.877 27 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.880 12.090 -0.239 17.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.250 6.250 3 C 0.105 3.895 4 C -0.293 4.293 5 C 0.127 3.873 6 N -0.400 5.400 7 C -0.242 4.242 8 C -0.096 4.096 9 C -0.299 4.299 10 S 0.153 5.847 11 C -0.769 4.769 12 H 0.105 0.895 13 C -0.218 4.218 14 N -0.547 5.547 15 Si 0.953 3.047 16 H -0.191 1.191 17 H -0.202 1.202 18 H -0.189 1.189 19 H 0.131 0.869 20 H 0.086 0.914 21 H 0.086 0.914 22 H 0.174 0.826 23 H 0.238 0.762 24 H 0.238 0.762 25 H 0.160 0.840 26 H 0.141 0.859 27 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.442 10.174 -0.172 15.312 hybrid contribution -1.542 1.621 -0.030 2.237 sum -12.983 11.795 -0.202 17.542 Atomic orbital electron populations 1.23331 0.76553 1.05236 1.02330 1.86145 1.23455 1.26967 1.88407 1.18364 0.89719 0.85091 0.96305 1.20580 1.00256 0.89864 1.18589 1.17440 0.90380 0.87287 0.92174 1.42249 1.08736 1.04427 1.84633 1.20583 0.92288 0.98068 1.13226 1.21092 1.00223 0.90835 0.97476 1.21327 0.94068 0.98585 1.15953 1.83011 1.02577 1.09421 1.89650 1.24427 0.92341 0.99830 1.60282 0.89546 1.27790 1.08173 0.94097 0.91715 1.70920 1.26183 1.12903 1.44710 0.82728 0.68677 0.75122 0.78134 1.19118 1.20178 1.18884 0.86887 0.91398 0.91411 0.82595 0.76234 0.76169 0.83988 0.85899 0.92763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 9.81 113.37 1.11 1.59 15 2 O -0.34 -13.15 9.87 -92.62 -0.91 -14.06 15 3 C 0.16 6.44 6.69 22.64 0.15 6.60 15 4 C -0.27 -8.35 8.88 22.47 0.20 -8.15 15 5 C 0.24 6.81 6.76 38.24 0.26 7.07 15 6 N -0.86 -15.29 9.09 -51.25 -0.47 -15.76 15 7 C -0.22 -7.35 9.88 22.41 0.22 -7.13 15 8 C -0.07 -3.14 9.21 22.40 0.21 -2.93 15 9 C -0.18 -8.96 6.11 22.79 0.14 -8.82 15 10 S -0.09 -5.35 20.16 -56.49 -1.14 -6.49 15 11 C -0.62 -37.03 8.98 67.91 0.61 -36.42 15 12 H 0.09 4.91 4.97 -2.91 -0.01 4.90 15 13 C -0.01 -0.86 5.49 84.80 0.47 -0.39 15 14 N -0.91 -57.91 13.67 21.62 0.30 -57.62 15 15 Si 1.14 50.28 29.92 68.60 2.05 52.33 15 16 H -0.27 -10.97 7.11 99.48 0.71 -10.26 15 17 H -0.28 -12.03 7.11 99.48 0.71 -11.32 15 18 H -0.26 -10.70 7.11 99.48 0.71 -9.99 15 19 H 0.11 2.26 8.14 -2.38 -0.02 2.24 15 20 H 0.07 1.38 7.66 -2.38 -0.02 1.36 15 21 H 0.07 1.38 7.66 -2.39 -0.02 1.36 15 22 H 0.16 3.59 6.29 -2.91 -0.02 3.57 15 23 H 0.41 5.17 8.84 -92.71 -0.82 4.35 15 24 H 0.41 5.58 8.84 -92.71 -0.82 4.76 15 25 H 0.14 3.87 8.06 -2.91 -0.02 3.85 15 26 H 0.12 5.81 5.02 -2.91 -0.01 5.80 15 27 H 0.26 17.11 7.12 -92.71 -0.66 16.45 15 Total: -1.00 -76.01 248.43 2.89 -73.12 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -0.31 Total: 17.06 kcal Atomic # 6 Polarization: -51.96 SS G_CDS: 3.36 Total: -48.59 kcal Atomic # 7 Polarization: -73.20 SS G_CDS: -0.17 Total: -73.37 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: -0.91 Total: -14.06 kcal Atomic # 14 Polarization: 50.28 SS G_CDS: 2.05 Total: 52.33 kcal Atomic # 16 Polarization: -5.35 SS G_CDS: -1.14 Total: -6.49 kcal Total: -76.01 2.89 -73.12 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086829528.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.371 kcal (2) G-P(sol) polarization free energy of solvation -76.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds