Wall clock time and date at job start Mon Mar 30 2020 02:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 119.99542 * 2 1 4 4 H 1.48501 * 109.47200 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47565 * 300.00178 * 3 2 1 6 6 H 1.48509 * 109.47083 * 60.00510 * 3 2 1 7 7 C 1.37878 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99419 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99982 * 359.97438 * 7 2 1 10 10 C 1.50699 * 109.46912 * 180.02562 * 9 7 2 11 11 C 1.38271 * 119.99138 * 270.02296 * 10 9 7 12 12 C 1.38220 * 120.05269 * 179.97438 * 11 10 9 13 13 C 1.38216 * 120.02462 * 359.78880 * 12 11 10 14 14 N 1.48005 * 120.01181 * 180.25068 * 13 12 11 15 15 O 1.21802 * 120.00163 * 0.21849 * 14 13 12 16 16 O 1.21802 * 119.99979 * 180.21600 * 14 13 12 17 17 C 1.38442 * 119.97534 * 0.46526 * 13 12 11 18 18 F 1.35104 * 120.02527 * 179.78775 * 17 13 12 19 19 C 1.38176 * 119.98409 * 90.00461 * 10 9 7 20 20 H 0.96990 * 120.00509 * 359.97438 * 1 2 3 21 21 H 1.09005 * 109.47095 * 60.00496 * 9 7 2 22 22 H 1.08995 * 109.47297 * 300.00412 * 9 7 2 23 23 H 1.08001 * 119.96978 * 359.97438 * 11 10 9 24 24 H 1.07993 * 119.98736 * 180.02562 * 12 11 10 25 25 H 1.07995 * 120.01616 * 0.04173 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2305 -3.6445 -0.0005 11 6 2.6801 -4.1695 -1.1981 12 6 3.5788 -5.2197 -1.1996 13 6 4.0324 -5.7434 -0.0036 14 7 4.9990 -6.8642 -0.0056 15 8 5.3978 -7.3227 -1.0612 16 8 5.3956 -7.3282 1.0485 17 6 3.5790 -5.2220 1.1961 18 9 4.0185 -5.7360 2.3657 19 6 2.6792 -4.1694 1.1963 20 1 -0.4850 0.8399 0.0004 21 1 0.6242 -2.5567 -0.8904 22 1 0.6248 -2.5571 0.8896 23 1 2.3287 -3.7586 -2.1331 24 1 3.9295 -5.6286 -2.1355 25 1 2.3277 -3.7595 2.1316 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087226080.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:19 Heat of formation + Delta-G solvation = -38.503937 kcal Electronic energy + Delta-G solvation = -14635.483070 eV Core-core repulsion = 11724.429192 eV Total energy + Delta-G solvation = -2911.053878 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 225.059 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.05380 -41.88727 -39.10810 -36.32917 -33.98276 -32.08352 -30.72691 -28.58269 -25.64711 -23.37059 -22.95885 -21.19598 -19.18042 -18.50824 -17.41827 -16.91011 -16.61005 -16.22506 -15.59907 -14.94928 -14.32927 -14.16545 -13.32209 -12.91547 -12.34682 -11.99535 -11.73292 -11.42731 -11.37881 -11.04257 -10.95836 -10.85979 -10.78391 -10.07879 -9.90469 -9.01946 -8.79176 -8.71838 -6.34797 -4.41953 0.07146 1.07291 1.57607 1.59258 3.12873 3.21783 3.25085 3.48554 3.86332 4.21007 4.52096 4.79029 5.01299 5.09407 5.31262 5.46147 5.71217 5.90640 6.20976 6.38697 6.43989 6.77153 7.10461 7.22995 7.58693 7.84607 7.88012 8.62467 9.24781 10.74980 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.046227 B = 0.006330 C = 0.006172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.558679 B = 4422.135775 C = 4535.413257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.064 3.936 3 Si 0.901 3.099 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.526 4.526 8 H 0.061 0.939 9 C 0.039 3.961 10 C 0.051 3.949 11 C -0.133 4.133 12 C -0.032 4.032 13 C -0.116 4.116 14 N 0.041 4.959 15 O -0.175 6.175 16 O -0.167 6.167 17 C 0.169 3.831 18 F -0.112 7.112 19 C -0.163 4.163 20 H 0.266 0.734 21 H 0.044 0.956 22 H 0.042 0.958 23 H 0.152 0.848 24 H 0.154 0.846 25 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.671 -7.038 -0.876 7.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.139 4.139 3 Si 0.728 3.272 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.563 4.563 8 H 0.080 0.920 9 C 0.003 3.997 10 C 0.050 3.950 11 C -0.152 4.152 12 C -0.051 4.051 13 C -0.201 4.201 14 N 0.557 4.443 15 O -0.388 6.388 16 O -0.381 6.381 17 C 0.148 3.852 18 F -0.090 7.090 19 C -0.182 4.182 20 H 0.076 0.924 21 H 0.062 0.938 22 H 0.060 0.940 23 H 0.169 0.831 24 H 0.172 0.828 25 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 3.088 -6.429 -0.831 7.180 hybrid contribution 0.776 0.554 0.241 0.983 sum 3.863 -5.875 -0.589 7.056 Atomic orbital electron populations 1.69935 1.06098 1.27414 1.49002 1.24994 0.94958 0.99517 0.94432 0.86385 0.80061 0.82829 0.77935 1.19533 1.20643 1.20662 1.20938 0.93147 0.89074 1.53172 0.92042 1.18633 0.92316 0.88812 0.99985 1.21168 0.91382 0.91752 0.90678 1.21296 0.98029 0.95786 1.00053 1.20935 0.93856 0.94247 0.96018 1.21066 1.04646 0.98199 0.96169 1.43392 0.99861 1.00697 1.00381 1.94488 1.60568 1.62902 1.20795 1.94565 1.60506 1.62500 1.20559 1.17442 0.94696 0.93622 0.79448 1.91614 1.87313 1.85324 1.44772 1.21302 0.99172 0.96062 1.01663 0.92389 0.93763 0.93964 0.83063 0.82819 0.82561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.71 13.29 55.43 0.74 -22.97 15 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 15 3 Si 0.90 19.74 29.54 -169.99 -5.02 14.72 15 4 H -0.27 -5.89 7.11 56.52 0.40 -5.48 15 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 15 6 H -0.28 -6.15 7.11 56.52 0.40 -5.74 15 7 C -0.53 -12.91 9.09 -34.44 -0.31 -13.22 15 8 H 0.06 1.50 7.74 -52.49 -0.41 1.10 15 9 C 0.04 0.84 5.10 -29.04 -0.15 0.70 15 10 C 0.05 0.90 5.07 -104.63 -0.53 0.37 15 11 C -0.13 -2.03 9.70 -39.58 -0.38 -2.41 15 12 C -0.03 -0.46 9.55 -39.60 -0.38 -0.84 15 13 C -0.12 -1.91 6.86 -79.89 -0.55 -2.46 15 14 N 0.04 0.73 4.45 33.99 0.15 0.88 15 15 O -0.18 -3.02 18.45 -29.46 -0.54 -3.56 15 16 O -0.17 -3.10 17.42 -29.46 -0.51 -3.61 15 17 C 0.17 2.82 7.25 -39.42 -0.29 2.54 15 18 F -0.11 -1.91 15.48 2.25 0.03 -1.87 15 19 C -0.16 -2.71 9.68 -39.51 -0.38 -3.09 15 20 H 0.27 6.74 8.31 -40.82 -0.34 6.40 15 21 H 0.04 0.99 8.09 -51.93 -0.42 0.57 15 22 H 0.04 0.95 8.08 -51.93 -0.42 0.53 15 23 H 0.15 2.06 8.06 -52.49 -0.42 1.63 15 24 H 0.15 1.85 7.61 -52.49 -0.40 1.45 15 25 H 0.16 2.43 8.06 -52.49 -0.42 2.01 15 LS Contribution 243.67 15.07 3.67 3.67 Total: -1.00 -26.70 243.67 -6.18 -32.88 By element: Atomic # 1 Polarization: -1.62 SS G_CDS: -1.63 Total: -3.24 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: -3.07 Total: -16.88 kcal Atomic # 7 Polarization: -22.98 SS G_CDS: 0.89 Total: -22.10 kcal Atomic # 8 Polarization: -6.12 SS G_CDS: -1.06 Total: -7.17 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.03 Total: -1.87 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -26.70 -6.18 -32.88 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087226080.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.628 kcal (2) G-P(sol) polarization free energy of solvation -26.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds