Wall clock time and date at job start Mon Mar 30 2020 03:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30695 * 1 3 3 Si 1.86797 * 119.99974 * 2 1 4 4 H 1.48503 * 109.46877 * 269.99594 * 3 2 1 5 5 H 1.48495 * 109.47332 * 29.99282 * 3 2 1 6 6 H 1.48504 * 109.47180 * 149.99618 * 3 2 1 7 7 C 1.40240 * 119.99687 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99490 * 180.02562 * 7 2 1 9 9 C 1.40126 * 120.00119 * 0.02562 * 7 2 1 10 10 N 1.33021 * 126.65565 * 359.97438 * 9 7 2 11 11 N 1.28568 * 109.35435 * 180.02562 * 10 9 7 12 12 C 1.31316 * 110.20640 * 359.75067 * 11 10 9 13 13 C 1.50697 * 126.07950 * 180.25255 * 12 11 10 14 14 H 1.08999 * 110.76079 * 187.21554 * 13 12 11 15 15 C 1.55133 * 110.85930 * 310.94106 * 13 12 11 16 16 C 1.53853 * 106.90292 * 160.29063 * 15 13 12 17 17 C 1.54277 * 108.92693 * 312.74889 * 16 15 13 18 18 S 1.83091 * 104.64967 * 27.95068 * 17 16 15 19 19 N 1.35298 * 107.84379 * 0.40641 * 12 11 10 20 20 H 0.97001 * 127.05096 * 179.87800 * 19 12 11 21 21 H 0.96998 * 119.99475 * 0.02562 * 1 2 3 22 22 H 1.08996 * 109.97681 * 279.65394 * 15 13 12 23 23 H 1.09002 * 109.97314 * 40.93055 * 15 13 12 24 24 H 1.09001 * 109.61313 * 192.82240 * 16 15 13 25 25 H 1.09007 * 109.46564 * 72.57721 * 16 15 13 26 26 H 1.08999 * 110.39581 * 269.15841 * 17 16 15 27 27 H 1.08997 * 110.49967 * 146.79157 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 2.4885 2.0463 -1.4001 5 1 1.4384 2.6527 0.6999 6 1 3.5385 1.4402 0.7001 7 6 2.0081 -1.2146 0.0005 8 1 3.0881 -1.2145 0.0010 9 6 1.3074 -2.4281 0.0005 10 7 -0.0138 -2.5822 0.0005 11 7 -0.2965 -3.8364 0.0011 12 6 0.8060 -4.5498 -0.0039 13 6 0.8893 -6.0545 -0.0104 14 1 1.9205 -6.3848 0.1144 15 6 -0.0266 -6.6632 1.0837 16 6 -0.2719 -8.1316 0.6957 17 6 -0.6532 -8.1975 -0.7978 18 16 0.1649 -6.7422 -1.5493 19 7 1.8537 -3.6938 0.0013 20 1 2.7961 -3.9236 0.0011 21 1 -0.4849 0.8401 -0.0004 22 1 0.4676 -6.6120 2.0539 23 1 -0.9734 -6.1242 1.1189 24 1 -1.0834 -8.5388 1.2988 25 1 0.6365 -8.7092 0.8671 26 1 -1.7345 -8.1293 -0.9171 27 1 -0.2794 -9.1176 -1.2469 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087717260.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:15 Heat of formation + Delta-G solvation = 53.705946 kcal Electronic energy + Delta-G solvation = -13041.168401 eV Core-core repulsion = 10732.618971 eV Total energy + Delta-G solvation = -2308.549431 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.063 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.74403 -35.89873 -33.64060 -31.92868 -30.72160 -28.12354 -25.61680 -24.17837 -21.08841 -20.86192 -19.70168 -17.56587 -16.24761 -15.99936 -15.32143 -14.70275 -14.14048 -13.77893 -13.51041 -13.18800 -12.55483 -11.92574 -11.56224 -11.39849 -11.28536 -11.20251 -11.04235 -10.68187 -10.37910 -9.66081 -9.61706 -9.38904 -9.01240 -8.36237 -7.62259 -7.21500 -6.61605 -4.57901 2.00494 2.69039 2.99025 3.08222 3.11608 3.65124 3.89603 4.33993 4.54176 4.79419 4.91830 5.08317 5.29930 5.37870 5.42643 5.53250 5.71763 5.77803 5.93578 6.03968 6.42615 6.92634 7.11054 7.26901 7.50183 8.17618 8.23419 8.75227 9.02107 10.31384 10.76792 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.074980 B = 0.006285 C = 0.006257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 373.342576 B = 4453.655691 C = 4473.718745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.736 5.736 2 C 0.079 3.921 3 Si 0.920 3.080 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.453 4.453 8 H 0.083 0.917 9 C 0.340 3.660 10 N -0.335 5.335 11 N -0.266 5.266 12 C 0.063 3.937 13 C 0.080 3.920 14 H 0.092 0.908 15 C -0.118 4.118 16 C -0.126 4.126 17 C -0.079 4.079 18 S -0.282 6.282 19 N -0.635 5.635 20 H 0.402 0.598 21 H 0.279 0.721 22 H 0.079 0.921 23 H 0.093 0.907 24 H 0.080 0.920 25 H 0.070 0.930 26 H 0.089 0.911 27 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.158 -10.426 1.816 11.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.360 5.360 2 C -0.147 4.147 3 Si 0.744 3.256 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.493 4.493 8 H 0.101 0.899 9 C 0.095 3.905 10 N -0.184 5.184 11 N -0.112 5.112 12 C -0.202 4.202 13 C -0.051 4.051 14 H 0.110 0.890 15 C -0.158 4.158 16 C -0.165 4.165 17 C -0.227 4.227 18 S -0.056 6.056 19 N -0.254 5.254 20 H 0.237 0.763 21 H 0.090 0.910 22 H 0.098 0.902 23 H 0.112 0.888 24 H 0.098 0.902 25 H 0.088 0.912 26 H 0.108 0.892 27 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.298 -9.627 0.677 9.738 hybrid contribution 2.339 -0.069 1.064 2.570 sum 3.637 -9.696 1.741 10.501 Atomic orbital electron populations 1.69958 1.07062 1.28644 1.30289 1.25791 0.94897 1.00663 0.93311 0.86135 0.79979 0.80325 0.79162 1.19409 1.20013 1.18736 1.18190 0.93822 0.87284 1.50040 0.89895 1.21600 0.90176 0.83905 0.94794 1.75662 1.09050 1.04549 1.29099 1.73996 1.23482 1.00314 1.13365 1.22585 0.86269 0.91544 1.19769 1.21593 1.00464 0.90113 0.92901 0.88985 1.22651 1.01271 0.94019 0.97882 1.22271 1.02265 0.97429 0.94494 1.23930 1.03259 0.98253 0.97276 1.87843 1.68940 1.30720 1.18121 1.43766 1.08233 1.07216 1.66221 0.76271 0.90974 0.90214 0.88829 0.90155 0.91159 0.89223 0.89295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -20.36 11.95 55.56 0.66 -19.69 15 2 C 0.08 2.03 5.50 -17.28 -0.10 1.93 15 3 Si 0.92 18.63 29.56 -169.99 -5.03 13.60 15 4 H -0.27 -5.38 7.11 56.52 0.40 -4.98 15 5 H -0.28 -5.46 7.11 56.52 0.40 -5.06 15 6 H -0.26 -5.16 7.11 56.52 0.40 -4.76 15 7 C -0.45 -12.02 9.46 -38.12 -0.36 -12.38 15 8 H 0.08 1.99 7.85 -52.48 -0.41 1.58 15 9 C 0.34 9.43 7.73 -155.21 -1.20 8.23 15 10 N -0.33 -10.08 10.53 31.22 0.33 -9.75 15 11 N -0.27 -7.30 11.90 32.88 0.39 -6.91 15 12 C 0.06 1.47 7.05 -154.50 -1.09 0.38 15 13 C 0.08 1.42 3.77 -26.76 -0.10 1.32 15 14 H 0.09 1.42 8.14 -51.93 -0.42 1.00 15 15 C -0.12 -1.79 5.88 -25.16 -0.15 -1.93 15 16 C -0.13 -1.45 6.39 -25.62 -0.16 -1.62 15 17 C -0.08 -1.00 7.34 37.83 0.28 -0.72 15 18 S -0.28 -5.05 22.71 -107.50 -2.44 -7.49 15 19 N -0.63 -14.81 6.29 -9.38 -0.06 -14.87 15 20 H 0.40 7.73 8.96 -40.82 -0.37 7.37 15 21 H 0.28 6.97 8.29 -40.82 -0.34 6.63 15 22 H 0.08 1.09 8.14 -51.93 -0.42 0.67 15 23 H 0.09 1.65 7.81 -51.93 -0.41 1.24 15 24 H 0.08 0.78 8.14 -51.93 -0.42 0.35 15 25 H 0.07 0.70 8.14 -51.93 -0.42 0.28 15 26 H 0.09 1.10 8.14 -51.93 -0.42 0.68 15 27 H 0.09 0.95 8.14 -51.93 -0.42 0.52 15 LS Contribution 249.14 15.07 3.75 3.75 Total: -1.00 -32.51 249.14 -8.12 -40.63 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -2.85 Total: 5.52 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -2.88 Total: -4.79 kcal Atomic # 7 Polarization: -52.55 SS G_CDS: 1.33 Total: -51.23 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.60 kcal Atomic # 16 Polarization: -5.05 SS G_CDS: -2.44 Total: -7.49 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -32.51 -8.12 -40.63 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087717260.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.335 kcal (2) G-P(sol) polarization free energy of solvation -32.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds