Wall clock time and date at job start Mon Mar 30 2020 03:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30695 * 1 3 3 Si 1.86797 * 119.99974 * 2 1 4 4 H 1.48503 * 109.46877 * 269.99594 * 3 2 1 5 5 H 1.48495 * 109.47332 * 29.99282 * 3 2 1 6 6 H 1.48504 * 109.47180 * 149.99618 * 3 2 1 7 7 C 1.40240 * 119.99687 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99490 * 180.02562 * 7 2 1 9 9 C 1.40126 * 120.00119 * 0.02562 * 7 2 1 10 10 N 1.33021 * 126.65565 * 359.97438 * 9 7 2 11 11 N 1.28568 * 109.35435 * 180.02562 * 10 9 7 12 12 C 1.31316 * 110.20640 * 359.75067 * 11 10 9 13 13 C 1.50697 * 126.07950 * 180.25255 * 12 11 10 14 14 H 1.08999 * 110.76079 * 187.21554 * 13 12 11 15 15 C 1.55133 * 110.85930 * 310.94106 * 13 12 11 16 16 C 1.53853 * 106.90292 * 160.29063 * 15 13 12 17 17 C 1.54277 * 108.92693 * 312.74889 * 16 15 13 18 18 S 1.83091 * 104.64967 * 27.95068 * 17 16 15 19 19 N 1.35298 * 107.84379 * 0.40641 * 12 11 10 20 20 H 0.97001 * 127.05096 * 179.87800 * 19 12 11 21 21 H 0.96998 * 119.99475 * 0.02562 * 1 2 3 22 22 H 1.08996 * 109.97681 * 279.65394 * 15 13 12 23 23 H 1.09002 * 109.97314 * 40.93055 * 15 13 12 24 24 H 1.09001 * 109.61313 * 192.82240 * 16 15 13 25 25 H 1.09007 * 109.46564 * 72.57721 * 16 15 13 26 26 H 1.08999 * 110.39581 * 269.15841 * 17 16 15 27 27 H 1.08997 * 110.49967 * 146.79157 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 2.4885 2.0463 -1.4001 5 1 1.4384 2.6527 0.6999 6 1 3.5385 1.4402 0.7001 7 6 2.0081 -1.2146 0.0005 8 1 3.0881 -1.2145 0.0010 9 6 1.3074 -2.4281 0.0005 10 7 -0.0138 -2.5822 0.0005 11 7 -0.2965 -3.8364 0.0011 12 6 0.8060 -4.5498 -0.0039 13 6 0.8893 -6.0545 -0.0104 14 1 1.9205 -6.3848 0.1144 15 6 -0.0266 -6.6632 1.0837 16 6 -0.2719 -8.1316 0.6957 17 6 -0.6532 -8.1975 -0.7978 18 16 0.1649 -6.7422 -1.5493 19 7 1.8537 -3.6938 0.0013 20 1 2.7961 -3.9236 0.0011 21 1 -0.4849 0.8401 -0.0004 22 1 0.4676 -6.6120 2.0539 23 1 -0.9734 -6.1242 1.1189 24 1 -1.0834 -8.5388 1.2988 25 1 0.6365 -8.7092 0.8671 26 1 -1.7345 -8.1293 -0.9171 27 1 -0.2794 -9.1176 -1.2469 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087717260.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:15 Heat of formation + Delta-G solvation = 31.973041 kcal Electronic energy + Delta-G solvation = -13042.110811 eV Core-core repulsion = 10732.618971 eV Total energy + Delta-G solvation = -2309.491840 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.063 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.70800 -37.09595 -35.54817 -33.88231 -32.31211 -29.80593 -27.32147 -25.67192 -22.86249 -22.40662 -21.37153 -19.34825 -18.12802 -17.42544 -16.84758 -16.26198 -15.83526 -15.25876 -14.93250 -14.78304 -13.86678 -13.39720 -13.04024 -12.95131 -12.85220 -12.61468 -12.44968 -11.97217 -11.75979 -11.61734 -11.29318 -10.99991 -10.86689 -10.35610 -9.59721 -8.64716 -8.51798 -6.61345 0.60521 1.35048 1.42754 1.49147 1.59429 1.87694 2.19907 2.56321 2.64380 3.37560 3.62843 3.77650 3.87236 4.07144 4.15572 4.32515 4.69577 4.77877 4.94143 4.96599 5.02393 5.20182 5.28887 5.37408 5.52960 6.22338 6.33841 6.78774 7.16363 8.44613 8.77595 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.074980 B = 0.006285 C = 0.006257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 373.342576 B = 4453.655691 C = 4473.718745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.029 3.971 3 Si 1.007 2.993 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.248 1.248 7 C -0.480 4.480 8 H 0.102 0.898 9 C 0.312 3.688 10 N -0.392 5.392 11 N -0.318 5.318 12 C 0.095 3.905 13 C 0.079 3.921 14 H 0.123 0.877 15 C -0.116 4.116 16 C -0.115 4.115 17 C -0.059 4.059 18 S -0.351 6.351 19 N -0.626 5.626 20 H 0.421 0.579 21 H 0.284 0.716 22 H 0.097 0.903 23 H 0.060 0.940 24 H 0.107 0.893 25 H 0.098 0.902 26 H 0.093 0.907 27 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.718 -12.105 2.424 13.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.192 4.192 3 Si 0.826 3.174 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.171 1.171 7 C -0.521 4.521 8 H 0.120 0.880 9 C 0.065 3.935 10 N -0.239 5.239 11 N -0.161 5.161 12 C -0.173 4.173 13 C -0.051 4.051 14 H 0.141 0.859 15 C -0.156 4.156 16 C -0.153 4.153 17 C -0.207 4.207 18 S -0.125 6.125 19 N -0.247 5.247 20 H 0.259 0.741 21 H 0.094 0.906 22 H 0.115 0.885 23 H 0.079 0.921 24 H 0.126 0.874 25 H 0.116 0.884 26 H 0.111 0.889 27 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.853 -11.329 1.290 11.754 hybrid contribution 1.824 0.207 0.859 2.026 sum 4.677 -11.122 2.149 12.255 Atomic orbital electron populations 1.70108 1.09352 1.30040 1.31839 1.26980 0.95656 1.04700 0.91843 0.84851 0.78674 0.74479 0.79408 1.18783 1.19503 1.17139 1.18728 0.94889 0.87650 1.50798 0.87976 1.21982 0.90162 0.85602 0.95737 1.75534 1.10796 1.06070 1.31488 1.73891 1.25430 1.00084 1.16646 1.23610 0.85222 0.93893 1.14617 1.21919 1.02970 0.86374 0.93878 0.85915 1.22650 0.99093 0.96082 0.97811 1.22264 1.04681 0.94765 0.93556 1.24128 1.02878 0.95988 0.97681 1.88044 1.70323 1.34683 1.19473 1.43753 1.09388 1.06184 1.65374 0.74067 0.90557 0.88461 0.92069 0.87431 0.88357 0.88861 0.86185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -45.33 11.95 21.88 0.26 -45.07 15 2 C 0.03 1.51 5.50 85.35 0.47 1.98 15 3 Si 1.01 38.26 29.56 68.60 2.03 40.29 15 4 H -0.26 -9.67 7.11 99.48 0.71 -8.96 15 5 H -0.27 -9.94 7.11 99.48 0.71 -9.23 15 6 H -0.25 -8.72 7.11 99.48 0.71 -8.02 15 7 C -0.48 -25.93 9.46 23.22 0.22 -25.71 15 8 H 0.10 4.87 7.85 -2.91 -0.02 4.85 15 9 C 0.31 17.83 7.73 133.50 1.03 18.86 15 10 N -0.39 -24.68 10.53 -55.14 -0.58 -25.26 15 11 N -0.32 -18.09 11.90 -49.88 -0.59 -18.69 15 12 C 0.10 4.44 7.05 137.81 0.97 5.41 15 13 C 0.08 2.68 3.77 30.58 0.12 2.80 15 14 H 0.12 3.42 8.14 -2.39 -0.02 3.40 15 15 C -0.12 -3.25 5.88 31.61 0.19 -3.06 15 16 C -0.11 -2.12 6.39 31.31 0.20 -1.92 15 17 C -0.06 -1.29 7.34 72.42 0.53 -0.76 15 18 S -0.35 -12.10 22.71 -56.49 -1.28 -13.38 15 19 N -0.63 -29.37 6.29 -183.57 -1.16 -30.53 15 20 H 0.42 15.87 8.96 -92.71 -0.83 15.04 15 21 H 0.28 14.74 8.29 -92.71 -0.77 13.97 15 22 H 0.10 2.37 8.14 -2.39 -0.02 2.35 15 23 H 0.06 2.12 7.81 -2.39 -0.02 2.11 15 24 H 0.11 1.53 8.14 -2.39 -0.02 1.51 15 25 H 0.10 1.37 8.14 -2.38 -0.02 1.35 15 26 H 0.09 2.01 8.14 -2.39 -0.02 1.99 15 27 H 0.12 1.97 8.14 -2.39 -0.02 1.95 15 Total: -1.00 -75.49 249.14 2.77 -72.73 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: 0.36 Total: 22.31 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: 3.72 Total: -2.40 kcal Atomic # 7 Polarization: -117.47 SS G_CDS: -2.07 Total: -119.54 kcal Atomic # 14 Polarization: 38.26 SS G_CDS: 2.03 Total: 40.29 kcal Atomic # 16 Polarization: -12.10 SS G_CDS: -1.28 Total: -13.38 kcal Total: -75.49 2.77 -72.73 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087717260.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.699 kcal (2) G-P(sol) polarization free energy of solvation -75.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds