Wall clock time and date at job start Mon Mar 30 2020 03:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86809 * 120.00268 * 2 1 4 4 H 1.48491 * 109.47157 * 269.99929 * 3 2 1 5 5 H 1.48503 * 109.46637 * 29.99993 * 3 2 1 6 6 H 1.48495 * 109.46911 * 149.99782 * 3 2 1 7 7 C 1.40240 * 120.00068 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00179 * 180.02562 * 7 2 1 9 9 C 1.40129 * 119.99812 * 0.02562 * 7 2 1 10 10 N 1.33024 * 126.65777 * 0.02562 * 9 7 2 11 11 N 1.28564 * 109.35622 * 179.73937 * 10 9 7 12 12 C 1.31311 * 110.20862 * 359.97438 * 11 10 9 13 13 C 1.50694 * 126.08173 * 179.97438 * 12 11 10 14 14 H 1.09005 * 110.69699 * 68.29001 * 13 12 11 15 15 C 1.54262 * 110.78781 * 304.98347 * 13 12 11 16 16 C 1.52336 * 112.58410 * 217.19424 * 15 13 12 17 17 C 1.54256 * 112.58930 * 0.02562 * 16 15 13 18 18 S 1.83949 * 102.58420 * 24.52627 * 17 16 15 19 19 N 1.35303 * 107.84428 * 0.02562 * 12 11 10 20 20 H 0.96997 * 127.05204 * 180.02562 * 19 12 11 21 21 H 0.97004 * 120.00177 * 359.97438 * 1 2 3 22 22 H 1.08996 * 108.86567 * 338.01236 * 15 13 12 23 23 H 1.08998 * 108.86945 * 96.37822 * 15 13 12 24 24 H 1.09003 * 108.86684 * 120.81660 * 16 15 13 25 25 H 1.08998 * 108.87120 * 239.17765 * 16 15 13 26 26 H 1.09000 * 110.79118 * 142.80065 * 17 16 15 27 27 H 1.09007 * 110.78262 * 266.25303 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 2.4884 2.0464 -1.4000 5 1 1.4383 2.6527 0.7001 6 1 3.5384 1.4401 0.7001 7 6 2.0080 -1.2145 0.0005 8 1 3.0880 -1.2145 0.0010 9 6 1.3073 -2.4280 0.0005 10 7 -0.0140 -2.5822 -0.0004 11 7 -0.2966 -3.8364 -0.0056 12 6 0.8058 -4.5498 -0.0088 13 6 0.8893 -6.0544 -0.0145 14 1 0.5336 -6.4564 -0.9633 15 6 0.0945 -6.6513 1.1652 16 6 0.7743 -7.8730 1.7701 17 6 2.0982 -8.2260 1.0614 18 16 2.6066 -6.6140 0.3357 19 7 1.8536 -3.6938 -0.0048 20 1 2.7960 -3.9235 -0.0062 21 1 -0.4850 0.8401 0.0004 22 1 -0.0148 -5.8901 1.9376 23 1 -0.8967 -6.9375 0.8136 24 1 0.9797 -7.6772 2.8225 25 1 0.0978 -8.7246 1.6985 26 1 2.8393 -8.5781 1.7790 27 1 1.9326 -8.9673 0.2795 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087717262.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:17 Heat of formation + Delta-G solvation = 55.253147 kcal Electronic energy + Delta-G solvation = -13073.027571 eV Core-core repulsion = 10764.545232 eV Total energy + Delta-G solvation = -2308.482339 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.063 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.73962 -35.94533 -33.61130 -31.93380 -30.78702 -28.13931 -25.79414 -24.45146 -20.96686 -20.81755 -19.49610 -17.45442 -16.64440 -15.97119 -15.36158 -14.60191 -14.40192 -13.92190 -13.46016 -13.07489 -12.60535 -12.15851 -11.68473 -11.49308 -11.28765 -11.22316 -10.98860 -10.44769 -10.31912 -9.82625 -9.62150 -9.41640 -8.99305 -8.36162 -7.63163 -7.56429 -6.58306 -4.55477 1.91099 2.40474 2.98294 3.10566 3.14077 3.49414 3.92692 4.36269 4.46783 4.66610 4.80309 5.11265 5.27013 5.32524 5.42234 5.50147 5.61846 5.83501 6.01354 6.17211 6.39464 6.96188 7.08352 7.29742 7.54322 8.19051 8.26895 8.79288 9.05764 10.34932 10.76314 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.060680 B = 0.006802 C = 0.006321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.328680 B = 4115.545384 C = 4428.622108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.739 5.739 2 C 0.080 3.920 3 Si 0.919 3.081 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.455 4.455 8 H 0.083 0.917 9 C 0.338 3.662 10 N -0.336 5.336 11 N -0.286 5.286 12 C 0.069 3.931 13 C 0.089 3.911 14 H 0.101 0.899 15 C -0.116 4.116 16 C -0.124 4.124 17 C -0.065 4.065 18 S -0.304 6.304 19 N -0.625 5.625 20 H 0.405 0.595 21 H 0.278 0.722 22 H 0.081 0.919 23 H 0.079 0.921 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.101 0.899 27 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.929 -11.010 2.070 11.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.364 5.364 2 C -0.145 4.145 3 Si 0.743 3.257 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.495 4.495 8 H 0.101 0.899 9 C 0.093 3.907 10 N -0.184 5.184 11 N -0.131 5.131 12 C -0.197 4.197 13 C -0.042 4.042 14 H 0.119 0.881 15 C -0.157 4.157 16 C -0.163 4.163 17 C -0.213 4.213 18 S -0.078 6.078 19 N -0.244 5.244 20 H 0.241 0.759 21 H 0.089 0.911 22 H 0.100 0.900 23 H 0.098 0.902 24 H 0.092 0.908 25 H 0.092 0.908 26 H 0.120 0.880 27 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.134 -10.029 1.890 10.676 hybrid contribution 1.270 -0.195 0.152 1.294 sum 4.404 -10.224 2.042 11.318 Atomic orbital electron populations 1.69949 1.07050 1.28536 1.30817 1.25771 0.94875 1.00605 0.93265 0.86145 0.80037 0.80358 0.79116 1.19448 1.20053 1.18713 1.18173 0.93824 0.87258 1.50277 0.89932 1.21577 0.90042 0.83990 0.95052 1.75605 1.09135 1.04110 1.29551 1.74028 1.23293 1.00538 1.15243 1.22568 0.86551 0.91273 1.19315 1.21648 0.90637 0.90748 1.01160 0.88056 1.22067 0.99440 0.96812 0.97339 1.22037 0.95058 0.98219 1.00943 1.24116 0.99518 0.95852 1.01827 1.87902 1.15505 1.22598 1.81835 1.43820 1.08438 1.06909 1.65279 0.75867 0.91068 0.89983 0.90203 0.90810 0.90847 0.88031 0.89358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -20.61 11.95 55.56 0.66 -19.95 15 2 C 0.08 2.08 5.50 -17.29 -0.10 1.99 15 3 Si 0.92 18.93 29.56 -169.99 -5.03 13.90 15 4 H -0.27 -5.45 7.11 56.52 0.40 -5.05 15 5 H -0.28 -5.55 7.11 56.52 0.40 -5.15 15 6 H -0.26 -5.27 7.11 56.52 0.40 -4.87 15 7 C -0.45 -12.35 9.46 -38.12 -0.36 -12.71 15 8 H 0.08 2.05 7.85 -52.49 -0.41 1.64 15 9 C 0.34 9.56 7.73 -155.21 -1.20 8.36 15 10 N -0.34 -10.16 10.53 31.22 0.33 -9.84 15 11 N -0.29 -7.83 12.21 32.88 0.40 -7.43 15 12 C 0.07 1.63 7.10 -154.50 -1.10 0.53 15 13 C 0.09 1.58 3.87 -27.23 -0.11 1.47 15 14 H 0.10 1.69 8.14 -51.93 -0.42 1.27 15 15 C -0.12 -1.74 5.92 -26.41 -0.16 -1.90 15 16 C -0.12 -1.38 6.30 -26.41 -0.17 -1.55 15 17 C -0.06 -0.71 7.46 37.81 0.28 -0.43 15 18 S -0.30 -4.80 21.70 -107.50 -2.33 -7.13 15 19 N -0.63 -15.17 6.02 -9.37 -0.06 -15.23 15 20 H 0.40 8.76 8.09 -40.82 -0.33 8.43 15 21 H 0.28 6.99 8.29 -40.82 -0.34 6.66 15 22 H 0.08 1.43 7.77 -51.93 -0.40 1.03 15 23 H 0.08 1.10 8.14 -51.93 -0.42 0.67 15 24 H 0.07 0.80 8.14 -51.93 -0.42 0.38 15 25 H 0.07 0.66 8.14 -51.93 -0.42 0.23 15 26 H 0.10 0.96 8.14 -51.93 -0.42 0.54 15 27 H 0.09 0.83 8.14 -51.92 -0.42 0.41 15 LS Contribution 247.48 15.07 3.73 3.73 Total: -1.00 -31.99 247.48 -8.00 -39.99 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -2.82 Total: 6.19 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: -2.90 Total: -4.24 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: 1.34 Total: -52.44 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.90 kcal Atomic # 16 Polarization: -4.80 SS G_CDS: -2.33 Total: -7.13 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -31.99 -8.00 -39.99 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087717262.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.245 kcal (2) G-P(sol) polarization free energy of solvation -31.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds