Wall clock time and date at job start Mon Mar 30 2020 02:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38309 * 119.96365 * 2 1 4 4 C 1.38259 * 120.14978 * 180.27800 * 3 2 1 5 5 C 1.38126 * 120.07327 * 359.44730 * 4 3 2 6 6 S 1.76204 * 120.03499 * 180.25389 * 5 4 3 7 7 O 1.42097 * 103.00019 * 205.80986 * 6 5 4 8 8 C 1.76208 * 103.00053 * 98.94373 * 6 5 4 9 9 H 1.07996 * 119.99613 * 359.97438 * 8 6 5 10 10 C 1.37868 * 120.00077 * 180.02562 * 8 6 5 11 11 N 1.31519 * 120.00181 * 179.97438 * 10 8 6 12 12 Si 1.86804 * 120.00165 * 359.97438 * 10 8 6 13 13 H 1.48491 * 109.47466 * 90.00123 * 12 10 8 14 14 H 1.48497 * 109.47202 * 210.00394 * 12 10 8 15 15 H 1.48506 * 109.46847 * 329.99716 * 12 10 8 16 16 C 1.38883 * 119.92650 * 0.27441 * 5 4 3 17 17 N 1.39678 * 120.07540 * 180.02562 * 16 5 4 18 18 C 1.38083 * 119.96294 * 179.72312 * 2 1 3 19 19 H 1.09005 * 109.46959 * 270.27371 * 1 2 3 20 20 H 1.08999 * 109.47331 * 30.27810 * 1 2 3 21 21 H 1.08994 * 109.47022 * 150.27885 * 1 2 3 22 22 H 1.07999 * 119.92357 * 0.02562 * 3 2 1 23 23 H 1.08003 * 119.96719 * 179.72112 * 4 3 2 24 24 H 0.96995 * 119.99832 * 179.97438 * 11 10 8 25 25 H 0.97001 * 119.99988 * 24.64967 * 17 16 5 26 26 H 0.97000 * 119.99984 * 204.64828 * 17 16 5 27 27 H 1.08005 * 120.03799 * 0.02562 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5803 1.2027 -0.0058 5 6 4.2764 0.0097 -0.0001 6 16 6.0384 0.0166 -0.0007 7 8 6.3628 -1.2315 -0.5974 8 6 6.4365 -0.2402 1.6965 9 1 5.6473 -0.3538 2.4249 10 6 7.7553 -0.2952 2.0946 11 7 8.0524 -0.4864 3.3614 12 14 9.1203 -0.0980 0.8346 13 1 9.4762 1.3383 0.7111 14 1 10.3126 -0.8676 1.2720 15 1 8.6571 -0.6083 -0.4808 16 6 3.5859 -1.1953 0.0057 17 7 4.2867 -2.4036 0.0121 18 6 2.1966 -1.1963 0.0058 19 1 -0.3633 0.0049 1.0277 20 1 -0.3634 0.8875 -0.5181 21 1 -0.3633 -0.8924 -0.5095 22 1 1.6559 2.1325 0.0004 23 1 4.1167 2.1401 -0.0103 24 1 8.9802 -0.5254 3.6414 25 1 5.1904 -2.4383 0.3629 26 1 3.8697 -3.2079 -0.3344 27 1 1.6566 -2.1316 0.0099 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088063854.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:20 Heat of formation + Delta-G solvation = -18.542703 kcal Electronic energy + Delta-G solvation = -13231.266517 eV Core-core repulsion = 10887.291399 eV Total energy + Delta-G solvation = -2343.975118 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.71100 -34.66170 -33.42507 -32.73369 -31.73303 -28.12016 -26.49645 -25.89421 -21.85649 -20.78802 -18.07620 -16.60001 -16.25483 -15.56120 -15.43524 -14.53707 -13.86115 -13.43359 -13.25155 -13.10300 -12.70879 -12.44846 -12.11898 -11.69777 -11.54108 -11.21014 -10.83878 -10.62600 -10.50059 -9.98132 -9.65584 -8.97594 -8.53219 -8.22090 -7.05987 -6.84736 -6.52383 -4.78709 1.82285 2.24326 3.01161 3.11125 3.31735 3.69034 4.07502 4.31958 4.68498 4.85656 5.06678 5.29120 5.35724 5.57660 5.75850 5.77772 5.90495 6.01468 6.13607 6.51674 6.61238 6.83047 7.01994 7.14376 7.55000 7.74257 8.30139 8.51792 8.72286 8.99880 10.59195 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.047807 B = 0.008892 C = 0.008696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.546902 B = 3148.260521 C = 3219.121238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.033 4.033 3 C -0.205 4.205 4 C -0.009 4.009 5 C -0.503 4.503 6 S 1.349 4.651 7 O -0.922 6.922 8 C -0.821 4.821 9 H 0.093 0.907 10 C 0.133 3.867 11 N -0.851 5.851 12 Si 0.812 3.188 13 H -0.253 1.253 14 H -0.263 1.263 15 H -0.223 1.223 16 C 0.281 3.719 17 N -0.865 5.865 18 C -0.222 4.222 19 H 0.067 0.933 20 H 0.063 0.937 21 H 0.060 0.940 22 H 0.113 0.887 23 H 0.127 0.873 24 H 0.273 0.727 25 H 0.419 0.581 26 H 0.383 0.617 27 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.254 4.588 -6.764 11.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.034 4.034 3 C -0.226 4.226 4 C -0.028 4.028 5 C -0.602 4.602 6 S 1.551 4.449 7 O -0.916 6.916 8 C -0.962 4.962 9 H 0.111 0.889 10 C -0.081 4.081 11 N -0.484 5.484 12 Si 0.634 3.366 13 H -0.177 1.177 14 H -0.188 1.188 15 H -0.145 1.145 16 C 0.171 3.829 17 N -0.409 5.409 18 C -0.246 4.246 19 H 0.085 0.915 20 H 0.082 0.918 21 H 0.079 0.921 22 H 0.131 0.869 23 H 0.145 0.855 24 H 0.083 0.917 25 H 0.257 0.743 26 H 0.210 0.790 27 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -7.495 4.665 -7.417 11.531 hybrid contribution -0.170 -2.234 0.917 2.421 sum -7.665 2.431 -6.500 10.340 Atomic orbital electron populations 1.20781 0.92116 1.02083 1.01896 1.19598 0.94942 0.93069 0.95789 1.20727 0.94485 0.96627 1.10723 1.20591 0.93469 0.96338 0.92432 1.27887 1.21253 0.94875 1.16164 1.67388 0.79504 1.10227 0.87794 1.92766 1.77321 1.46746 1.74793 1.27488 0.98457 1.60257 1.09957 0.88908 1.24590 0.98134 0.90373 0.94957 1.70021 1.19901 1.42699 1.15780 0.87617 0.83806 0.80482 0.84719 1.17735 1.18755 1.14515 1.17586 0.90461 0.86618 0.88234 1.43087 1.20724 1.06819 1.70245 1.20572 0.92724 0.97433 1.13836 0.91470 0.91770 0.92129 0.86931 0.85526 0.91682 0.74276 0.79045 0.87297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.37 10.01 36.00 0.36 -1.01 15 2 C -0.03 -0.55 5.88 -104.65 -0.62 -1.16 15 3 C -0.20 -3.35 9.70 -39.55 -0.38 -3.74 15 4 C -0.01 -0.15 9.75 -39.61 -0.39 -0.54 15 5 C -0.50 -10.76 5.58 -39.38 -0.22 -10.98 15 6 S 1.35 30.71 11.58 -107.50 -1.25 29.47 15 7 O -0.92 -24.54 12.81 -35.23 -0.45 -25.00 15 8 C -0.82 -22.58 9.77 30.60 0.30 -22.28 15 9 H 0.09 2.84 8.06 -52.49 -0.42 2.42 15 10 C 0.13 3.70 5.47 -17.82 -0.10 3.60 15 11 N -0.85 -24.86 13.96 55.43 0.77 -24.09 15 12 Si 0.81 18.96 27.42 -169.99 -4.66 14.30 15 13 H -0.25 -5.28 7.11 56.52 0.40 -4.88 15 14 H -0.26 -6.12 7.11 56.52 0.40 -5.72 15 15 H -0.22 -5.28 5.95 56.52 0.34 -4.95 15 16 C 0.28 6.06 6.68 -83.79 -0.56 5.50 15 17 N -0.86 -18.77 8.06 32.41 0.26 -18.51 15 18 C -0.22 -4.13 9.59 -39.38 -0.38 -4.51 15 19 H 0.07 0.77 8.14 -51.93 -0.42 0.35 15 20 H 0.06 0.68 8.09 -51.93 -0.42 0.26 15 21 H 0.06 0.68 8.08 -51.93 -0.42 0.26 15 22 H 0.11 1.50 8.06 -52.49 -0.42 1.07 15 23 H 0.13 1.79 8.06 -52.48 -0.42 1.37 15 24 H 0.27 7.31 8.31 -40.82 -0.34 6.97 15 25 H 0.42 10.37 6.12 -40.82 -0.25 10.12 15 26 H 0.38 6.97 8.91 -40.82 -0.36 6.60 15 27 H 0.11 1.80 8.06 -52.48 -0.42 1.37 15 LS Contribution 246.31 15.07 3.71 3.71 Total: -1.00 -33.63 246.31 -6.36 -39.99 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -2.77 Total: 15.25 kcal Atomic # 6 Polarization: -33.14 SS G_CDS: -1.98 Total: -35.12 kcal Atomic # 7 Polarization: -43.63 SS G_CDS: 1.03 Total: -42.59 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: -0.45 Total: -25.00 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -4.66 Total: 14.30 kcal Atomic # 16 Polarization: 30.71 SS G_CDS: -1.25 Total: 29.47 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -33.63 -6.36 -39.99 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088063854.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.448 kcal (2) G-P(sol) polarization free energy of solvation -33.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds