Wall clock time and date at job start Mon Mar 30 2020 02:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38309 * 119.96365 * 2 1 4 4 C 1.38259 * 120.14978 * 180.27800 * 3 2 1 5 5 C 1.38126 * 120.07327 * 359.44730 * 4 3 2 6 6 S 1.76204 * 120.03499 * 180.25389 * 5 4 3 7 7 O 1.42097 * 103.00019 * 205.80986 * 6 5 4 8 8 C 1.76208 * 103.00053 * 98.94373 * 6 5 4 9 9 H 1.07996 * 119.99613 * 359.97438 * 8 6 5 10 10 C 1.37868 * 120.00077 * 180.02562 * 8 6 5 11 11 N 1.31519 * 120.00181 * 179.97438 * 10 8 6 12 12 Si 1.86804 * 120.00165 * 359.97438 * 10 8 6 13 13 H 1.48491 * 109.47466 * 90.00123 * 12 10 8 14 14 H 1.48497 * 109.47202 * 210.00394 * 12 10 8 15 15 H 1.48506 * 109.46847 * 329.99716 * 12 10 8 16 16 C 1.38883 * 119.92650 * 0.27441 * 5 4 3 17 17 N 1.39678 * 120.07540 * 180.02562 * 16 5 4 18 18 C 1.38083 * 119.96294 * 179.72312 * 2 1 3 19 19 H 1.09005 * 109.46959 * 270.27371 * 1 2 3 20 20 H 1.08999 * 109.47331 * 30.27810 * 1 2 3 21 21 H 1.08994 * 109.47022 * 150.27885 * 1 2 3 22 22 H 1.07999 * 119.92357 * 0.02562 * 3 2 1 23 23 H 1.08003 * 119.96719 * 179.72112 * 4 3 2 24 24 H 0.96995 * 119.99832 * 179.97438 * 11 10 8 25 25 H 0.97001 * 119.99988 * 24.64967 * 17 16 5 26 26 H 0.97000 * 119.99984 * 204.64828 * 17 16 5 27 27 H 1.08005 * 120.03799 * 0.02562 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5803 1.2027 -0.0058 5 6 4.2764 0.0097 -0.0001 6 16 6.0384 0.0166 -0.0007 7 8 6.3628 -1.2315 -0.5974 8 6 6.4365 -0.2402 1.6965 9 1 5.6473 -0.3538 2.4249 10 6 7.7553 -0.2952 2.0946 11 7 8.0524 -0.4864 3.3614 12 14 9.1203 -0.0980 0.8346 13 1 9.4762 1.3383 0.7111 14 1 10.3126 -0.8676 1.2720 15 1 8.6571 -0.6083 -0.4808 16 6 3.5859 -1.1953 0.0057 17 7 4.2867 -2.4036 0.0121 18 6 2.1966 -1.1963 0.0058 19 1 -0.3633 0.0049 1.0277 20 1 -0.3634 0.8875 -0.5181 21 1 -0.3633 -0.8924 -0.5095 22 1 1.6559 2.1325 0.0004 23 1 4.1167 2.1401 -0.0103 24 1 8.9802 -0.5254 3.6414 25 1 5.1904 -2.4383 0.3629 26 1 3.8697 -3.2079 -0.3344 27 1 1.6566 -2.1316 0.0099 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088063854.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:19 Heat of formation + Delta-G solvation = -43.875753 kcal Electronic energy + Delta-G solvation = -13232.365041 eV Core-core repulsion = 10887.291399 eV Total energy + Delta-G solvation = -2345.073642 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.13615 -36.40634 -35.15363 -34.84663 -33.07927 -29.57432 -28.09564 -27.68849 -23.27785 -22.22869 -20.03992 -18.30236 -17.88606 -17.47407 -16.94752 -16.23831 -15.36301 -14.91288 -14.61045 -14.56152 -14.50667 -14.23994 -13.48393 -13.13142 -12.97746 -12.86035 -12.68628 -12.19933 -12.05285 -11.86925 -11.15138 -11.00201 -10.42796 -9.67312 -8.97470 -8.62790 -8.44070 -6.94945 0.36249 0.80052 1.19624 1.27290 1.46509 1.96582 2.15280 2.71405 2.79411 3.20288 3.22619 3.84146 4.11358 4.16736 4.50430 4.65498 4.79533 4.87152 4.99900 5.11594 5.34137 5.40198 5.58772 5.64101 5.78500 6.18495 6.24105 6.71043 6.87844 7.00972 8.53345 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.047807 B = 0.008892 C = 0.008696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.546902 B = 3148.260521 C = 3219.121238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.029 4.029 3 C -0.202 4.202 4 C -0.012 4.012 5 C -0.544 4.544 6 S 1.416 4.584 7 O -0.960 6.960 8 C -0.842 4.842 9 H 0.041 0.959 10 C 0.077 3.923 11 N -0.902 5.902 12 Si 0.871 3.129 13 H -0.202 1.202 14 H -0.263 1.263 15 H -0.229 1.229 16 C 0.245 3.755 17 N -0.876 5.876 18 C -0.235 4.235 19 H 0.079 0.921 20 H 0.089 0.911 21 H 0.070 0.930 22 H 0.154 0.846 23 H 0.163 0.837 24 H 0.279 0.721 25 H 0.402 0.598 26 H 0.394 0.606 27 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.623 6.558 -8.366 14.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.030 4.030 3 C -0.222 4.222 4 C -0.031 4.031 5 C -0.645 4.645 6 S 1.619 4.381 7 O -0.954 6.954 8 C -0.980 4.980 9 H 0.059 0.941 10 C -0.132 4.132 11 N -0.536 5.536 12 Si 0.688 3.312 13 H -0.124 1.124 14 H -0.187 1.187 15 H -0.152 1.152 16 C 0.137 3.863 17 N -0.420 5.420 18 C -0.258 4.258 19 H 0.097 0.903 20 H 0.108 0.892 21 H 0.089 0.911 22 H 0.172 0.828 23 H 0.180 0.820 24 H 0.088 0.912 25 H 0.237 0.763 26 H 0.223 0.777 27 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -8.872 6.653 -9.003 14.283 hybrid contribution -0.025 -2.832 1.440 3.177 sum -8.896 3.822 -7.562 12.286 Atomic orbital electron populations 1.20871 0.88638 1.03956 1.03178 1.20215 0.97508 0.92290 0.92975 1.21261 0.94016 0.98350 1.08604 1.21116 0.94744 0.96413 0.90840 1.27699 1.20160 0.96700 1.19972 1.66430 0.80233 1.08143 0.83336 1.92676 1.79559 1.48594 1.74595 1.28071 0.97531 1.60161 1.12271 0.94052 1.25644 1.00890 0.89617 0.97054 1.70138 1.20927 1.44454 1.18123 0.86738 0.79935 0.83463 0.81057 1.12398 1.18705 1.15216 1.18030 0.92017 0.86501 0.89730 1.43054 1.20030 1.07897 1.70982 1.20854 0.91627 0.99338 1.14014 0.90255 0.89245 0.91055 0.82824 0.81967 0.91154 0.76348 0.77743 0.85818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.20 10.01 71.23 0.71 -1.49 15 2 C -0.03 -0.86 5.88 -19.89 -0.12 -0.98 15 3 C -0.20 -5.83 9.70 22.29 0.22 -5.61 15 4 C -0.01 -0.39 9.75 22.25 0.22 -0.18 15 5 C -0.54 -23.13 5.58 22.40 0.12 -23.00 15 6 S 1.42 64.79 11.58 -56.49 -0.65 64.13 15 7 O -0.96 -51.82 12.81 -148.98 -1.91 -53.73 15 8 C -0.84 -48.15 9.77 67.73 0.66 -47.49 15 9 H 0.04 2.68 8.06 -2.91 -0.02 2.66 15 10 C 0.08 4.38 5.47 84.65 0.46 4.84 15 11 N -0.90 -54.58 13.96 21.44 0.30 -54.29 15 12 Si 0.87 38.97 27.42 68.60 1.88 40.85 15 13 H -0.20 -7.43 7.11 99.48 0.71 -6.73 15 14 H -0.26 -11.64 7.11 99.48 0.71 -10.94 15 15 H -0.23 -10.48 5.95 99.48 0.59 -9.89 15 16 C 0.25 10.67 6.68 38.21 0.26 10.93 15 17 N -0.88 -39.34 8.06 -51.37 -0.41 -39.75 15 18 C -0.23 -8.44 9.59 22.40 0.21 -8.23 15 19 H 0.08 1.47 8.14 -2.38 -0.02 1.45 15 20 H 0.09 1.39 8.09 -2.39 -0.02 1.37 15 21 H 0.07 1.31 8.08 -2.39 -0.02 1.29 15 22 H 0.15 3.19 8.06 -2.91 -0.02 3.16 15 23 H 0.16 4.05 8.06 -2.91 -0.02 4.02 15 24 H 0.28 15.38 8.31 -92.71 -0.77 14.61 15 25 H 0.40 20.87 6.12 -92.71 -0.57 20.30 15 26 H 0.39 14.86 8.91 -92.71 -0.83 14.03 15 27 H 0.12 3.93 8.06 -2.91 -0.02 3.91 15 Total: -1.00 -76.40 246.31 1.64 -74.76 By element: Atomic # 1 Polarization: 39.56 SS G_CDS: -0.31 Total: 39.25 kcal Atomic # 6 Polarization: -73.97 SS G_CDS: 2.75 Total: -71.22 kcal Atomic # 7 Polarization: -93.92 SS G_CDS: -0.11 Total: -94.03 kcal Atomic # 8 Polarization: -51.82 SS G_CDS: -1.91 Total: -53.73 kcal Atomic # 14 Polarization: 38.97 SS G_CDS: 1.88 Total: 40.85 kcal Atomic # 16 Polarization: 64.79 SS G_CDS: -0.65 Total: 64.13 kcal Total: -76.40 1.64 -74.76 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088063854.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.886 kcal (2) G-P(sol) polarization free energy of solvation -76.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds