Wall clock time and date at job start Mon Mar 30 2020 02:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38126 * 120.03717 * 2 1 4 4 C 1.38260 * 120.07837 * 179.97438 * 3 2 1 5 5 S 1.76196 * 119.92787 * 180.02562 * 4 3 2 6 6 O 1.42100 * 102.99972 * 163.10628 * 5 4 3 7 7 C 1.76206 * 102.99947 * 269.97726 * 5 4 3 8 8 H 1.07997 * 119.99865 * 0.02562 * 7 5 4 9 9 C 1.37871 * 119.99922 * 179.97438 * 7 5 4 10 10 N 1.31519 * 120.00260 * 0.02562 * 9 7 5 11 11 Si 1.86805 * 119.99947 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.46877 * 359.97438 * 11 9 7 13 13 H 1.48496 * 109.47084 * 120.00104 * 11 9 7 14 14 H 1.48506 * 109.47004 * 240.00011 * 11 9 7 15 15 C 1.38313 * 120.14827 * 359.97438 * 4 3 2 16 16 C 1.38088 * 120.07227 * 0.03735 * 15 4 3 17 17 C 1.38893 * 120.04007 * 180.27733 * 2 1 3 18 18 N 1.39669 * 120.07092 * 359.97438 * 17 2 1 19 19 H 1.09008 * 109.47122 * 89.99736 * 1 2 3 20 20 H 1.08999 * 109.47093 * 209.99556 * 1 2 3 21 21 H 1.09004 * 109.47467 * 329.99965 * 1 2 3 22 22 H 1.08007 * 119.96280 * 0.02562 * 3 2 1 23 23 H 0.97001 * 119.99977 * 179.97438 * 10 9 7 24 24 H 1.07999 * 119.96374 * 180.02562 * 15 4 3 25 25 H 1.08002 * 120.03354 * 179.97438 * 16 15 4 26 26 H 0.97008 * 120.00077 * 180.27407 * 18 17 2 27 27 H 0.96995 * 120.00716 * 0.28065 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1958 0.0000 4 6 3.5810 1.1968 0.0005 5 16 4.4589 2.7244 0.0012 6 8 5.7667 2.3413 0.4040 7 6 4.6577 3.0681 -1.7155 8 1 4.2643 2.3835 -2.4524 9 6 5.3145 4.2115 -2.1181 10 7 5.7931 5.0455 -1.2208 11 14 5.5246 4.5762 -3.9381 12 1 4.9015 3.4896 -4.7358 13 1 4.8685 5.8682 -4.2630 14 1 6.9714 4.6605 -4.2623 15 6 4.2765 0.0012 0.0016 16 6 3.5915 -1.1978 0.0014 17 6 2.2023 -1.2024 -0.0058 18 7 1.5063 -2.4133 -0.0111 19 1 -0.3634 0.0000 -1.0277 20 1 -0.3633 -0.8900 0.5138 21 1 -0.3634 0.8900 0.5138 22 1 1.6583 2.1311 0.0004 23 1 6.2556 5.8497 -1.5041 24 1 5.3565 0.0055 0.0024 25 1 4.1352 -2.1310 0.0018 26 1 1.9929 -3.2524 -0.0112 27 1 0.5363 -2.4152 -0.0149 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088065148.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:22 Heat of formation + Delta-G solvation = -32.536746 kcal Electronic energy + Delta-G solvation = -12959.113595 eV Core-core repulsion = 10614.531650 eV Total energy + Delta-G solvation = -2344.581945 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.89823 -34.14312 -33.53760 -32.72364 -31.99310 -28.41509 -26.26720 -25.65643 -21.94178 -20.81758 -17.93678 -16.79514 -16.61514 -15.78220 -15.16704 -14.17324 -13.74904 -13.66019 -13.40955 -13.12902 -12.54664 -12.17287 -11.98507 -11.70260 -11.26522 -11.14758 -10.68404 -10.53950 -10.40016 -10.19056 -10.03801 -8.96169 -8.30702 -8.13703 -7.19422 -6.85668 -6.20429 -4.71048 2.04310 2.05175 3.16096 3.24653 3.30698 3.88151 4.11091 4.34146 4.41472 4.91444 5.29110 5.32499 5.61191 5.63488 5.82829 5.91319 5.98721 6.10789 6.28576 6.47952 6.71638 6.81359 6.90093 7.36162 7.46050 7.58373 7.85357 7.95901 8.34040 9.18805 10.55380 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.038536 B = 0.008028 C = 0.007616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.416580 B = 3487.121964 C = 3675.470097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.191 4.191 3 C -0.009 4.009 4 C -0.488 4.488 5 S 1.408 4.592 6 O -0.918 6.918 7 C -0.818 4.818 8 H 0.078 0.922 9 C 0.120 3.880 10 N -0.867 5.867 11 Si 0.904 3.096 12 H -0.268 1.268 13 H -0.274 1.274 14 H -0.278 1.278 15 C -0.017 4.017 16 C -0.216 4.216 17 C 0.219 3.781 18 N -0.884 5.884 19 H 0.059 0.941 20 H 0.050 0.950 21 H 0.066 0.934 22 H 0.128 0.872 23 H 0.279 0.721 24 H 0.122 0.878 25 H 0.109 0.891 26 H 0.392 0.608 27 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.607 -7.049 2.266 13.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.196 4.196 3 C -0.029 4.029 4 C -0.581 4.581 5 S 1.606 4.394 6 O -0.913 6.913 7 C -0.959 4.959 8 H 0.097 0.903 9 C -0.092 4.092 10 N -0.501 5.501 11 Si 0.730 3.270 12 H -0.192 1.192 13 H -0.199 1.199 14 H -0.204 1.204 15 C -0.036 4.036 16 C -0.239 4.239 17 C 0.116 3.884 18 N -0.425 5.425 19 H 0.077 0.923 20 H 0.069 0.931 21 H 0.085 0.915 22 H 0.146 0.854 23 H 0.089 0.911 24 H 0.140 0.860 25 H 0.127 0.873 26 H 0.219 0.781 27 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -11.190 -6.369 3.120 13.248 hybrid contribution 1.074 -1.963 -2.434 3.306 sum -10.116 -8.332 0.686 13.124 Atomic orbital electron populations 1.20519 0.91965 1.01702 1.01309 1.19402 0.95168 0.92342 1.12681 1.20510 0.92712 0.96399 0.93269 1.28947 1.02693 1.16964 1.09476 1.67714 0.92988 0.88704 0.90033 1.92772 1.39637 1.77982 1.80898 1.27596 1.44875 1.12208 1.11178 0.90328 1.24728 0.91273 0.94087 0.99129 1.69864 1.33889 1.11858 1.34523 0.86391 0.78330 0.78513 0.83815 1.19242 1.19927 1.20395 1.20905 0.99905 0.91284 0.91514 1.20602 0.92003 0.98402 1.12930 1.17585 0.91166 0.85810 0.93879 1.42495 1.08611 1.05105 1.86306 0.92259 0.93075 0.91517 0.85445 0.91088 0.86019 0.87304 0.78050 0.77807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.17 9.56 36.00 0.34 -0.83 15 2 C -0.19 -3.12 5.90 -104.42 -0.62 -3.74 15 3 C -0.01 -0.17 9.40 -39.61 -0.37 -0.54 15 4 C -0.49 -10.80 5.60 -39.55 -0.22 -11.02 15 5 S 1.41 35.27 13.38 -107.50 -1.44 33.83 15 6 O -0.92 -28.38 16.46 -35.23 -0.58 -28.96 15 7 C -0.82 -22.92 9.34 30.60 0.29 -22.63 15 8 H 0.08 2.21 7.81 -52.49 -0.41 1.80 15 9 C 0.12 3.33 5.46 -17.82 -0.10 3.23 15 10 N -0.87 -24.63 13.19 55.43 0.73 -23.89 15 11 Si 0.90 21.18 29.54 -169.99 -5.02 16.15 15 12 H -0.27 -6.28 7.11 56.52 0.40 -5.88 15 13 H -0.27 -6.03 7.11 56.52 0.40 -5.63 15 14 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 15 C -0.02 -0.37 9.44 -39.61 -0.37 -0.74 15 16 C -0.22 -4.03 9.90 -39.38 -0.39 -4.42 15 17 C 0.22 3.61 6.73 -83.79 -0.56 3.04 15 18 N -0.88 -10.54 8.99 32.41 0.29 -10.25 15 19 H 0.06 0.67 8.14 -51.92 -0.42 0.25 15 20 H 0.05 0.51 6.57 -51.93 -0.34 0.17 15 21 H 0.07 0.71 8.09 -51.93 -0.42 0.29 15 22 H 0.13 1.93 8.06 -52.48 -0.42 1.51 15 23 H 0.28 7.28 8.31 -40.82 -0.34 6.94 15 24 H 0.12 2.97 7.30 -52.49 -0.38 2.59 15 25 H 0.11 1.77 8.06 -52.49 -0.42 1.35 15 26 H 0.39 3.92 8.84 -40.82 -0.36 3.56 15 27 H 0.39 3.82 6.83 -40.82 -0.28 3.55 15 LS Contribution 252.23 15.07 3.80 3.80 Total: -1.00 -35.80 252.23 -6.82 -42.62 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -2.60 Total: 4.36 kcal Atomic # 6 Polarization: -35.65 SS G_CDS: -2.00 Total: -37.66 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: 1.02 Total: -34.14 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: -0.58 Total: -28.96 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 35.27 SS G_CDS: -1.44 Total: 33.83 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -35.80 -6.82 -42.62 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088065148.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.081 kcal (2) G-P(sol) polarization free energy of solvation -35.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds