Wall clock time and date at job start Mon Mar 30 2020 02:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38126 * 120.03717 * 2 1 4 4 C 1.38260 * 120.07837 * 179.97438 * 3 2 1 5 5 S 1.76196 * 119.92787 * 180.02562 * 4 3 2 6 6 O 1.42100 * 102.99972 * 163.10628 * 5 4 3 7 7 C 1.76206 * 102.99947 * 269.97726 * 5 4 3 8 8 H 1.07997 * 119.99865 * 0.02562 * 7 5 4 9 9 C 1.37871 * 119.99922 * 179.97438 * 7 5 4 10 10 N 1.31519 * 120.00260 * 0.02562 * 9 7 5 11 11 Si 1.86805 * 119.99947 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.46877 * 359.97438 * 11 9 7 13 13 H 1.48496 * 109.47084 * 120.00104 * 11 9 7 14 14 H 1.48506 * 109.47004 * 240.00011 * 11 9 7 15 15 C 1.38313 * 120.14827 * 359.97438 * 4 3 2 16 16 C 1.38088 * 120.07227 * 0.03735 * 15 4 3 17 17 C 1.38893 * 120.04007 * 180.27733 * 2 1 3 18 18 N 1.39669 * 120.07092 * 359.97438 * 17 2 1 19 19 H 1.09008 * 109.47122 * 89.99736 * 1 2 3 20 20 H 1.08999 * 109.47093 * 209.99556 * 1 2 3 21 21 H 1.09004 * 109.47467 * 329.99965 * 1 2 3 22 22 H 1.08007 * 119.96280 * 0.02562 * 3 2 1 23 23 H 0.97001 * 119.99977 * 179.97438 * 10 9 7 24 24 H 1.07999 * 119.96374 * 180.02562 * 15 4 3 25 25 H 1.08002 * 120.03354 * 179.97438 * 16 15 4 26 26 H 0.97008 * 120.00077 * 180.27407 * 18 17 2 27 27 H 0.96995 * 120.00716 * 0.28065 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1958 0.0000 4 6 3.5810 1.1968 0.0005 5 16 4.4589 2.7244 0.0012 6 8 5.7667 2.3413 0.4040 7 6 4.6577 3.0681 -1.7155 8 1 4.2643 2.3835 -2.4524 9 6 5.3145 4.2115 -2.1181 10 7 5.7931 5.0455 -1.2208 11 14 5.5246 4.5762 -3.9381 12 1 4.9015 3.4896 -4.7358 13 1 4.8685 5.8682 -4.2630 14 1 6.9714 4.6605 -4.2623 15 6 4.2765 0.0012 0.0016 16 6 3.5915 -1.1978 0.0014 17 6 2.2023 -1.2024 -0.0058 18 7 1.5063 -2.4133 -0.0111 19 1 -0.3634 0.0000 -1.0277 20 1 -0.3633 -0.8900 0.5138 21 1 -0.3634 0.8900 0.5138 22 1 1.6583 2.1311 0.0004 23 1 6.2556 5.8497 -1.5041 24 1 5.3565 0.0055 0.0024 25 1 4.1352 -2.1310 0.0018 26 1 1.9929 -3.2524 -0.0112 27 1 0.5363 -2.4152 -0.0149 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088065148.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:21 Heat of formation + Delta-G solvation = -60.155589 kcal Electronic energy + Delta-G solvation = -12960.311238 eV Core-core repulsion = 10614.531650 eV Total energy + Delta-G solvation = -2345.779588 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.28582 -35.82949 -35.37250 -34.84264 -33.29205 -29.79032 -27.83542 -27.47746 -23.35523 -22.27782 -19.98354 -18.17112 -17.84958 -17.53756 -17.19585 -15.94488 -15.27220 -15.14135 -14.84426 -14.70810 -13.96531 -13.76347 -13.41349 -13.08872 -13.01689 -12.88226 -12.72209 -12.36033 -12.08088 -11.81993 -11.53734 -11.03358 -10.39678 -9.59013 -8.98885 -8.58036 -8.16195 -6.89401 0.50088 0.58351 1.31287 1.34300 1.47704 2.03740 2.41826 2.78552 2.89583 3.01591 3.63775 3.95122 4.06785 4.14667 4.55066 4.59032 4.74435 4.92996 4.96836 5.16567 5.32119 5.40101 5.45185 5.56667 5.78548 6.06812 6.15653 6.59273 7.02502 7.03829 8.47912 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.038536 B = 0.008028 C = 0.007616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.416580 B = 3487.121964 C = 3675.470097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.187 4.187 3 C -0.011 4.011 4 C -0.517 4.517 5 S 1.438 4.562 6 O -0.988 6.988 7 C -0.847 4.847 8 H 0.067 0.933 9 C 0.069 3.931 10 N -0.895 5.895 11 Si 0.967 3.033 12 H -0.270 1.270 13 H -0.244 1.244 14 H -0.280 1.280 15 C -0.050 4.050 16 C -0.224 4.224 17 C 0.231 3.769 18 N -0.860 5.860 19 H 0.072 0.928 20 H 0.075 0.925 21 H 0.083 0.917 22 H 0.158 0.842 23 H 0.288 0.712 24 H 0.081 0.919 25 H 0.128 0.872 26 H 0.405 0.595 27 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.706 -8.116 1.429 16.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.193 4.193 3 C -0.030 4.030 4 C -0.614 4.614 5 S 1.641 4.359 6 O -0.984 6.984 7 C -0.987 4.987 8 H 0.085 0.915 9 C -0.140 4.140 10 N -0.530 5.530 11 Si 0.789 3.211 12 H -0.195 1.195 13 H -0.168 1.168 14 H -0.206 1.206 15 C -0.070 4.070 16 C -0.248 4.248 17 C 0.125 3.875 18 N -0.402 5.402 19 H 0.091 0.909 20 H 0.094 0.906 21 H 0.102 0.898 22 H 0.175 0.825 23 H 0.097 0.903 24 H 0.100 0.900 25 H 0.146 0.854 26 H 0.235 0.765 27 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -14.302 -7.434 2.291 16.281 hybrid contribution 1.872 -1.842 -2.135 3.385 sum -12.430 -9.276 0.156 15.511 Atomic orbital electron populations 1.20638 0.88087 1.03892 1.02797 1.19905 0.97834 0.91253 1.10329 1.20874 0.91070 0.98950 0.92142 1.28267 1.04316 1.14823 1.14014 1.66596 0.90941 0.90138 0.88262 1.92655 1.42904 1.80927 1.81900 1.27896 1.45708 1.12587 1.12490 0.91492 1.25648 0.90732 0.93768 1.03886 1.69924 1.34095 1.12391 1.36577 0.85432 0.78204 0.79436 0.77999 1.19456 1.16803 1.20551 1.20735 0.98282 0.93378 0.94622 1.20698 0.93440 0.97639 1.12980 1.17680 0.90465 0.87691 0.91712 1.42432 1.09522 1.04081 1.84144 0.90905 0.90615 0.89835 0.82481 0.90258 0.90045 0.85381 0.76533 0.75859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.82 9.56 71.23 0.68 -1.14 15 2 C -0.19 -5.52 5.90 -19.74 -0.12 -5.63 15 3 C -0.01 -0.38 9.40 22.25 0.21 -0.17 15 4 C -0.52 -23.53 5.60 22.29 0.12 -23.40 15 5 S 1.44 75.71 13.38 -56.49 -0.76 74.96 15 6 O -0.99 -65.17 16.46 -148.98 -2.45 -67.62 15 7 C -0.85 -49.08 9.34 67.73 0.63 -48.45 15 8 H 0.07 3.89 7.81 -2.91 -0.02 3.87 15 9 C 0.07 3.88 5.46 84.65 0.46 4.35 15 10 N -0.90 -51.93 13.19 21.45 0.28 -51.64 15 11 Si 0.97 43.56 29.54 68.60 2.03 45.59 15 12 H -0.27 -12.12 7.11 99.48 0.71 -11.42 15 13 H -0.24 -9.80 7.11 99.48 0.71 -9.09 15 14 H -0.28 -12.59 7.11 99.48 0.71 -11.88 15 15 C -0.05 -2.35 9.44 22.25 0.21 -2.14 15 16 C -0.22 -8.22 9.90 22.40 0.22 -8.00 15 17 C 0.23 6.92 6.73 38.21 0.26 7.17 15 18 N -0.86 -16.58 8.99 -51.37 -0.46 -17.04 15 19 H 0.07 1.25 8.14 -2.38 -0.02 1.23 15 20 H 0.08 1.07 6.57 -2.39 -0.02 1.05 15 21 H 0.08 1.35 8.09 -2.38 -0.02 1.33 15 22 H 0.16 4.42 8.06 -2.91 -0.02 4.40 15 23 H 0.29 15.17 8.31 -92.71 -0.77 14.40 15 24 H 0.08 4.36 7.30 -2.91 -0.02 4.34 15 25 H 0.13 4.05 8.06 -2.91 -0.02 4.02 15 26 H 0.41 6.32 8.84 -92.70 -0.82 5.50 15 27 H 0.41 5.68 6.83 -92.71 -0.63 5.04 15 Total: -1.00 -81.47 252.23 1.07 -80.40 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -0.25 Total: 12.79 kcal Atomic # 6 Polarization: -80.10 SS G_CDS: 2.68 Total: -77.42 kcal Atomic # 7 Polarization: -68.51 SS G_CDS: -0.18 Total: -68.69 kcal Atomic # 8 Polarization: -65.17 SS G_CDS: -2.45 Total: -67.62 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: 75.71 SS G_CDS: -0.76 Total: 74.96 kcal Total: -81.47 1.07 -80.40 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088065148.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.243 kcal (2) G-P(sol) polarization free energy of solvation -81.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds