Wall clock time and date at job start Mon Mar 30 2020 02:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38306 * 119.92737 * 2 1 4 4 C 1.38085 * 120.07417 * 179.72292 * 3 2 1 5 5 C 1.38933 * 119.92248 * 0.55366 * 4 3 2 6 6 N 1.39675 * 120.07529 * 179.70086 * 5 4 3 7 7 C 1.38892 * 119.85144 * 359.72114 * 5 4 3 8 8 C 1.38120 * 119.92454 * 0.02562 * 7 5 4 9 9 S 1.76203 * 119.96299 * 180.02562 * 8 7 5 10 10 O 1.42103 * 102.99862 * 348.10316 * 9 8 7 11 11 C 1.76206 * 102.99923 * 94.97463 * 9 8 7 12 12 H 1.07995 * 120.00323 * 0.02562 * 11 9 8 13 13 C 1.37882 * 119.99549 * 180.02562 * 11 9 8 14 14 N 1.31514 * 120.00250 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 119.99553 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47161 * 60.00056 * 15 13 11 17 17 H 1.48497 * 109.46784 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46909 * 299.99636 * 15 13 11 19 19 H 1.08999 * 109.47015 * 269.72787 * 1 2 3 20 20 H 1.09000 * 109.46646 * 29.71940 * 1 2 3 21 21 H 1.09000 * 109.47248 * 149.72657 * 1 2 3 22 22 H 1.08001 * 119.96101 * 359.97438 * 3 2 1 23 23 H 1.07994 * 120.03603 * 180.27367 * 4 3 2 24 24 H 0.96997 * 120.00413 * 180.02562 * 6 5 4 25 25 H 0.97008 * 119.99475 * 0.02600 * 6 5 4 26 26 H 1.07999 * 120.03386 * 180.02562 * 7 5 4 27 27 H 0.96997 * 119.99593 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1971 1.1986 0.0000 4 6 3.5779 1.2022 0.0058 5 6 4.2741 -0.0001 0.0000 6 7 5.6708 -0.0002 -0.0005 7 6 3.5780 -1.2020 -0.0058 8 6 2.1968 -1.1983 -0.0062 9 16 1.3127 -2.7225 -0.0129 10 8 2.3244 -3.6776 -0.3019 11 6 0.9844 -2.9977 1.6963 12 1 1.3249 -2.2853 2.4332 13 6 0.2929 -4.1227 2.0930 14 7 -0.1212 -4.9905 1.1958 15 14 -0.0557 -4.4141 3.9050 16 1 -0.8632 -3.2890 4.4409 17 1 -0.8075 -5.6846 4.0662 18 1 1.2271 -4.5009 4.6481 19 1 -0.3633 -0.0049 1.0277 20 1 -0.3632 0.8925 -0.5095 21 1 -0.3634 -0.8875 -0.5181 22 1 1.6552 2.1329 -0.0004 23 1 4.1160 2.1385 0.0102 24 1 6.1558 -0.8402 -0.0050 25 1 6.1558 0.8399 0.0036 26 1 4.1161 -2.1384 -0.0099 27 1 -0.6080 -5.7817 1.4749 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088065896.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:40 Heat of formation + Delta-G solvation = -33.155188 kcal Electronic energy + Delta-G solvation = -13152.420098 eV Core-core repulsion = 10807.811335 eV Total energy + Delta-G solvation = -2344.608763 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.68462 -34.52184 -33.62653 -32.78565 -30.27363 -30.07889 -25.73498 -25.12130 -22.36267 -20.64032 -18.07019 -16.81868 -16.45560 -15.29924 -14.92603 -14.48819 -13.86495 -13.50813 -13.31569 -12.93545 -12.84559 -12.05127 -11.77642 -11.45630 -11.22269 -11.00840 -10.74660 -10.67237 -10.35893 -10.18152 -9.79810 -8.99282 -8.44149 -8.27149 -6.95007 -6.90081 -6.28013 -4.76799 1.90873 2.20541 3.16950 3.21994 3.24987 3.81383 4.23525 4.30503 4.44062 4.86603 5.40303 5.54938 5.61365 5.81986 5.92123 6.03325 6.24283 6.38026 6.44210 6.46894 6.76875 6.95860 7.08814 7.34133 7.48238 7.53823 7.98188 8.12019 8.28269 9.13353 10.51014 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.033321 B = 0.009311 C = 0.008890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.112942 B = 3006.436492 C = 3148.838263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.078 4.078 3 C -0.100 4.100 4 C -0.188 4.188 5 C 0.182 3.818 6 N -0.888 5.888 7 C -0.128 4.128 8 C -0.397 4.397 9 S 1.406 4.594 10 O -0.917 6.917 11 C -0.815 4.815 12 H 0.079 0.921 13 C 0.120 3.880 14 N -0.867 5.867 15 Si 0.906 3.094 16 H -0.266 1.266 17 H -0.280 1.280 18 H -0.273 1.273 19 H 0.074 0.926 20 H 0.058 0.942 21 H 0.076 0.924 22 H 0.114 0.886 23 H 0.109 0.891 24 H 0.394 0.606 25 H 0.390 0.610 26 H 0.122 0.878 27 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.628 10.617 -2.531 10.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.081 4.081 3 C -0.119 4.119 4 C -0.210 4.210 5 C 0.079 3.921 6 N -0.428 5.428 7 C -0.152 4.152 8 C -0.488 4.488 9 S 1.605 4.395 10 O -0.912 6.912 11 C -0.956 4.956 12 H 0.097 0.903 13 C -0.092 4.092 14 N -0.500 5.500 15 Si 0.732 3.268 16 H -0.191 1.191 17 H -0.205 1.205 18 H -0.198 1.198 19 H 0.092 0.908 20 H 0.077 0.923 21 H 0.094 0.906 22 H 0.132 0.868 23 H 0.127 0.873 24 H 0.222 0.778 25 H 0.217 0.783 26 H 0.140 0.860 27 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.272 9.907 -3.389 10.474 hybrid contribution 2.289 -0.086 2.551 3.428 sum 2.561 9.821 -0.838 10.184 Atomic orbital electron populations 1.20815 0.91264 1.02353 1.02901 1.19325 0.95631 0.91576 1.01523 1.20773 0.93302 0.97360 1.00512 1.20438 0.94613 0.95318 1.10678 1.17942 0.83676 0.94320 0.96201 1.42367 1.03426 1.10036 1.86990 1.20600 0.94330 0.95954 1.04286 1.28915 1.01540 1.17145 1.01224 1.67757 1.01055 0.77798 0.92937 1.92769 1.58575 1.56162 1.83681 1.27397 1.43847 1.13163 1.11158 0.90251 1.24728 0.91858 0.93404 0.99193 1.69841 1.34157 1.11223 1.34819 0.86430 0.78851 0.77944 0.83621 1.19073 1.20535 1.19768 0.90759 0.92263 0.90562 0.86772 0.87322 0.77799 0.78297 0.86030 0.90868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.79 9.56 36.01 0.34 -1.45 15 2 C -0.08 -1.46 5.88 -104.58 -0.62 -2.08 15 3 C -0.10 -1.68 9.69 -39.61 -0.38 -2.07 15 4 C -0.19 -3.17 9.90 -39.38 -0.39 -3.56 15 5 C 0.18 3.40 6.75 -83.79 -0.57 2.83 15 6 N -0.89 -12.97 9.09 32.41 0.29 -12.68 15 7 C -0.13 -2.90 9.31 -39.38 -0.37 -3.27 15 8 C -0.40 -8.93 5.60 -39.61 -0.22 -9.15 15 9 S 1.41 35.38 11.56 -107.50 -1.24 34.13 15 10 O -0.92 -28.37 16.38 -35.23 -0.58 -28.95 15 11 C -0.82 -22.63 9.35 30.60 0.29 -22.34 15 12 H 0.08 2.20 7.81 -52.49 -0.41 1.79 15 13 C 0.12 3.31 5.46 -17.82 -0.10 3.21 15 14 N -0.87 -24.36 13.19 55.43 0.73 -23.63 15 15 Si 0.91 20.96 29.54 -169.99 -5.02 15.94 15 16 H -0.27 -5.84 7.11 56.52 0.40 -5.44 15 17 H -0.28 -6.22 7.11 56.52 0.40 -5.82 15 18 H -0.27 -6.47 7.11 56.52 0.40 -6.07 15 19 H 0.07 1.13 8.14 -51.93 -0.42 0.71 15 20 H 0.06 0.72 8.08 -51.93 -0.42 0.30 15 21 H 0.08 1.12 6.75 -51.93 -0.35 0.77 15 22 H 0.11 1.54 8.06 -52.49 -0.42 1.12 15 23 H 0.11 1.50 8.06 -52.49 -0.42 1.08 15 24 H 0.39 5.42 8.84 -40.82 -0.36 5.06 15 25 H 0.39 4.48 8.84 -40.82 -0.36 4.12 15 26 H 0.12 3.00 7.22 -52.49 -0.38 2.62 15 27 H 0.28 7.29 8.31 -40.82 -0.34 6.95 15 LS Contribution 252.69 15.07 3.81 3.81 Total: -1.00 -35.35 252.69 -6.70 -42.05 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -2.68 Total: 7.19 kcal Atomic # 6 Polarization: -35.85 SS G_CDS: -2.01 Total: -37.86 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: 1.03 Total: -36.31 kcal Atomic # 8 Polarization: -28.37 SS G_CDS: -0.58 Total: -28.95 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: 35.38 SS G_CDS: -1.24 Total: 34.13 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -35.35 -6.70 -42.05 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088065896.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.894 kcal (2) G-P(sol) polarization free energy of solvation -35.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds