Wall clock time and date at job start Mon Mar 30 2020 02:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38306 * 119.92737 * 2 1 4 4 C 1.38085 * 120.07417 * 179.72292 * 3 2 1 5 5 C 1.38933 * 119.92248 * 0.55366 * 4 3 2 6 6 N 1.39675 * 120.07529 * 179.70086 * 5 4 3 7 7 C 1.38892 * 119.85144 * 359.72114 * 5 4 3 8 8 C 1.38120 * 119.92454 * 0.02562 * 7 5 4 9 9 S 1.76203 * 119.96299 * 180.02562 * 8 7 5 10 10 O 1.42103 * 102.99862 * 348.10316 * 9 8 7 11 11 C 1.76206 * 102.99923 * 94.97463 * 9 8 7 12 12 H 1.07995 * 120.00323 * 0.02562 * 11 9 8 13 13 C 1.37882 * 119.99549 * 180.02562 * 11 9 8 14 14 N 1.31514 * 120.00250 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 119.99553 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47161 * 60.00056 * 15 13 11 17 17 H 1.48497 * 109.46784 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46909 * 299.99636 * 15 13 11 19 19 H 1.08999 * 109.47015 * 269.72787 * 1 2 3 20 20 H 1.09000 * 109.46646 * 29.71940 * 1 2 3 21 21 H 1.09000 * 109.47248 * 149.72657 * 1 2 3 22 22 H 1.08001 * 119.96101 * 359.97438 * 3 2 1 23 23 H 1.07994 * 120.03603 * 180.27367 * 4 3 2 24 24 H 0.96997 * 120.00413 * 180.02562 * 6 5 4 25 25 H 0.97008 * 119.99475 * 0.02600 * 6 5 4 26 26 H 1.07999 * 120.03386 * 180.02562 * 7 5 4 27 27 H 0.96997 * 119.99593 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1971 1.1986 0.0000 4 6 3.5779 1.2022 0.0058 5 6 4.2741 -0.0001 0.0000 6 7 5.6708 -0.0002 -0.0005 7 6 3.5780 -1.2020 -0.0058 8 6 2.1968 -1.1983 -0.0062 9 16 1.3127 -2.7225 -0.0129 10 8 2.3244 -3.6776 -0.3019 11 6 0.9844 -2.9977 1.6963 12 1 1.3249 -2.2853 2.4332 13 6 0.2929 -4.1227 2.0930 14 7 -0.1212 -4.9905 1.1958 15 14 -0.0557 -4.4141 3.9050 16 1 -0.8632 -3.2890 4.4409 17 1 -0.8075 -5.6846 4.0662 18 1 1.2271 -4.5009 4.6481 19 1 -0.3633 -0.0049 1.0277 20 1 -0.3632 0.8925 -0.5095 21 1 -0.3634 -0.8875 -0.5181 22 1 1.6552 2.1329 -0.0004 23 1 4.1160 2.1385 0.0102 24 1 6.1558 -0.8402 -0.0050 25 1 6.1558 0.8399 0.0036 26 1 4.1161 -2.1384 -0.0099 27 1 -0.6080 -5.7817 1.4749 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088065896.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:39 Heat of formation + Delta-G solvation = -60.498902 kcal Electronic energy + Delta-G solvation = -13153.605810 eV Core-core repulsion = 10807.811335 eV Total energy + Delta-G solvation = -2345.794475 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.13208 -36.01106 -35.67823 -34.89670 -31.71074 -31.47302 -27.87435 -26.45600 -23.88131 -22.09296 -20.07853 -18.40158 -17.77137 -17.36534 -16.67243 -16.01719 -15.35125 -15.28668 -15.04548 -14.44871 -14.30190 -13.67413 -13.34641 -13.14559 -12.99037 -12.80390 -12.45910 -12.30549 -12.16547 -11.93147 -11.15735 -11.04853 -10.46419 -9.88237 -8.99772 -8.39465 -8.23446 -6.93586 0.34732 0.74663 1.31605 1.35795 1.45157 1.96987 2.35985 2.76633 2.91219 3.04362 3.57343 3.97561 4.14090 4.25010 4.47633 4.66309 4.90829 5.00514 5.08568 5.17948 5.41480 5.46690 5.54885 5.58811 5.89208 6.11182 6.11929 6.59814 7.00096 7.01558 8.45177 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.033321 B = 0.009311 C = 0.008890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.112942 B = 3006.436492 C = 3148.838263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.084 4.084 3 C -0.090 4.090 4 C -0.178 4.178 5 C 0.180 3.820 6 N -0.875 5.875 7 C -0.171 4.171 8 C -0.424 4.424 9 S 1.433 4.567 10 O -0.989 6.989 11 C -0.842 4.842 12 H 0.069 0.931 13 C 0.070 3.930 14 N -0.894 5.894 15 Si 0.968 3.032 16 H -0.242 1.242 17 H -0.263 1.263 18 H -0.285 1.285 19 H 0.075 0.925 20 H 0.101 0.899 21 H 0.073 0.927 22 H 0.162 0.838 23 H 0.152 0.848 24 H 0.397 0.603 25 H 0.409 0.591 26 H 0.080 0.920 27 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.005 13.745 -1.745 13.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.087 4.087 3 C -0.109 4.109 4 C -0.200 4.200 5 C 0.075 3.925 6 N -0.416 5.416 7 C -0.195 4.195 8 C -0.520 4.520 9 S 1.636 4.364 10 O -0.984 6.984 11 C -0.982 4.982 12 H 0.087 0.913 13 C -0.139 4.139 14 N -0.529 5.529 15 Si 0.789 3.211 16 H -0.166 1.166 17 H -0.187 1.187 18 H -0.211 1.211 19 H 0.093 0.907 20 H 0.120 0.880 21 H 0.091 0.909 22 H 0.180 0.820 23 H 0.170 0.830 24 H 0.225 0.775 25 H 0.239 0.761 26 H 0.099 0.901 27 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.351 13.015 -2.614 13.280 hybrid contribution 2.579 -0.867 2.265 3.540 sum 2.229 12.148 -0.349 12.356 Atomic orbital electron populations 1.20961 0.89001 1.04406 1.03542 1.19739 0.97444 0.90978 1.00553 1.21321 0.93583 0.98191 0.97790 1.20986 0.95083 0.95921 1.08023 1.18010 0.85233 0.93664 0.95550 1.42307 1.02124 1.11326 1.85864 1.20433 0.94784 0.96116 1.08192 1.28293 1.01743 1.16751 1.05176 1.66726 1.00481 0.77652 0.91530 1.92652 1.61372 1.59767 1.84605 1.27657 1.44465 1.13744 1.12286 0.91256 1.25656 0.91412 0.92985 1.03891 1.69907 1.34427 1.11674 1.36867 0.85496 0.78486 0.79349 0.77760 1.16566 1.18718 1.21093 0.90657 0.88022 0.90868 0.82019 0.83029 0.77529 0.76057 0.90134 0.90120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.48 9.56 71.24 0.68 -2.79 15 2 C -0.08 -3.01 5.88 -19.84 -0.12 -3.13 15 3 C -0.09 -2.62 9.69 22.25 0.22 -2.41 15 4 C -0.18 -5.25 9.90 22.40 0.22 -5.03 15 5 C 0.18 6.51 6.75 38.21 0.26 6.77 15 6 N -0.87 -24.19 9.09 -51.37 -0.47 -24.66 15 7 C -0.17 -8.02 9.31 22.40 0.21 -7.81 15 8 C -0.42 -19.53 5.60 22.25 0.12 -19.41 15 9 S 1.43 75.80 11.56 -56.49 -0.65 75.15 15 10 O -0.99 -65.38 16.38 -148.98 -2.44 -67.82 15 11 C -0.84 -48.28 9.35 67.74 0.63 -47.64 15 12 H 0.07 3.97 7.81 -2.91 -0.02 3.95 15 13 C 0.07 3.91 5.46 84.66 0.46 4.38 15 14 N -0.89 -51.45 13.19 21.45 0.28 -51.17 15 15 Si 0.97 42.95 29.54 68.60 2.03 44.98 15 16 H -0.24 -9.77 7.11 99.48 0.71 -9.06 15 17 H -0.26 -10.85 7.11 99.48 0.71 -10.15 15 18 H -0.29 -13.15 7.11 99.48 0.71 -12.44 15 19 H 0.07 2.14 8.14 -2.39 -0.02 2.12 15 20 H 0.10 2.01 8.08 -2.39 -0.02 1.99 15 21 H 0.07 2.10 6.75 -2.39 -0.02 2.09 15 22 H 0.16 3.23 8.06 -2.91 -0.02 3.21 15 23 H 0.15 3.21 8.06 -2.91 -0.02 3.19 15 24 H 0.40 10.83 8.84 -92.71 -0.82 10.01 15 25 H 0.41 8.13 8.84 -92.70 -0.82 7.31 15 26 H 0.08 4.32 7.22 -2.91 -0.02 4.30 15 27 H 0.29 15.17 8.31 -92.71 -0.77 14.40 15 Total: -1.00 -80.66 252.69 1.00 -79.66 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: -0.43 Total: 20.92 kcal Atomic # 6 Polarization: -79.75 SS G_CDS: 2.69 Total: -77.07 kcal Atomic # 7 Polarization: -75.64 SS G_CDS: -0.18 Total: -75.83 kcal Atomic # 8 Polarization: -65.38 SS G_CDS: -2.44 Total: -67.82 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Atomic # 16 Polarization: 75.80 SS G_CDS: -0.65 Total: 75.15 kcal Total: -80.66 1.00 -79.66 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088065896.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.160 kcal (2) G-P(sol) polarization free energy of solvation -80.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds