Wall clock time and date at job start Mon Mar 30 2020 02:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38934 * 120.03435 * 2 1 4 4 N 1.39675 * 120.07694 * 359.95381 * 3 2 1 5 5 C 1.38894 * 119.84812 * 179.97438 * 3 2 1 6 6 C 1.38123 * 119.92499 * 0.02562 * 5 3 2 7 7 C 1.38265 * 120.07709 * 0.27827 * 6 5 3 8 8 C 1.38081 * 120.03985 * 179.97438 * 2 1 3 9 9 S 1.76206 * 119.96303 * 0.02562 * 8 2 1 10 10 O 1.42097 * 102.99801 * 191.84915 * 9 8 2 11 11 C 1.76203 * 102.99767 * 84.97692 * 9 8 2 12 12 H 1.07996 * 120.00363 * 0.02562 * 11 9 8 13 13 C 1.37876 * 119.99706 * 180.02562 * 11 9 8 14 14 N 1.31518 * 120.00162 * 359.97438 * 13 11 9 15 15 Si 1.86797 * 119.99872 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47262 * 59.99826 * 15 13 11 17 17 H 1.48504 * 109.47203 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47099 * 299.99233 * 15 13 11 19 19 H 1.09002 * 109.46572 * 84.87485 * 1 2 3 20 20 H 1.09007 * 109.46860 * 204.86870 * 1 2 3 21 21 H 1.08998 * 109.47113 * 324.86864 * 1 2 3 22 22 H 0.96993 * 120.00018 * 180.02562 * 4 3 2 23 23 H 0.96998 * 119.99331 * 0.02562 * 4 3 2 24 24 H 1.07998 * 120.03794 * 179.97438 * 5 3 2 25 25 H 1.08001 * 119.96356 * 179.97438 * 6 5 3 26 26 H 1.07991 * 119.92824 * 179.70375 * 7 6 5 27 27 H 0.96998 * 119.99898 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2024 1.2028 0.0000 4 7 1.5064 2.4138 -0.0010 5 6 3.5914 1.1983 0.0005 6 6 4.2765 -0.0011 0.0005 7 6 3.5814 -1.1962 -0.0058 8 6 2.1983 -1.1953 0.0005 9 16 1.3173 -2.7214 0.0005 10 8 2.3310 -3.6756 0.2854 11 6 0.9897 -2.9898 -1.7098 12 1 1.3293 -2.2739 -2.4436 13 6 0.2996 -4.1139 -2.1113 14 7 -0.1136 -4.9860 -1.2178 15 14 -0.0472 -4.3989 -3.9246 16 1 1.2362 -4.4815 -4.6670 17 1 -0.7976 -5.6695 -4.0913 18 1 -0.8555 -3.2726 -4.4570 19 1 -0.3632 0.0918 -1.0236 20 1 -0.3633 -0.9324 0.4322 21 1 -0.3633 0.8404 0.5914 22 1 1.9930 3.2528 -0.0013 23 1 0.5364 2.4155 -0.0013 24 1 4.1350 2.1314 0.0001 25 1 5.3565 -0.0053 0.0005 26 1 4.1195 -2.1325 -0.0106 27 1 -0.5988 -5.7770 -1.5004 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088066083.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:46 Heat of formation + Delta-G solvation = -58.435588 kcal Electronic energy + Delta-G solvation = -13216.489825 eV Core-core repulsion = 10870.784821 eV Total energy + Delta-G solvation = -2345.705003 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.24889 -35.96919 -35.25639 -34.87010 -33.32285 -29.68147 -27.87631 -27.44635 -23.51014 -22.03790 -20.09177 -18.38568 -17.86028 -17.34847 -16.61111 -16.25944 -15.35048 -15.18841 -15.16984 -14.58978 -14.08639 -13.71130 -13.19800 -13.10561 -12.97608 -12.88060 -12.47764 -12.21940 -12.14729 -12.04290 -11.51218 -11.05615 -10.47846 -9.70446 -8.99914 -8.37336 -8.24348 -6.93978 0.33688 0.71337 1.31368 1.36091 1.45178 1.95963 2.35317 2.76723 2.89650 3.14264 3.56731 3.96637 4.12836 4.19613 4.36739 4.65139 4.84630 4.91270 4.98354 5.06573 5.41306 5.45723 5.54578 5.66208 5.77187 6.03704 6.11775 6.71552 6.99929 7.16841 8.45058 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.034508 B = 0.009527 C = 0.008811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.202684 B = 2938.304219 C = 3176.995497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.101 4.101 3 C 0.199 3.801 4 N -0.861 5.861 5 C -0.181 4.181 6 C -0.103 4.103 7 C -0.156 4.156 8 C -0.423 4.423 9 S 1.434 4.566 10 O -0.988 6.988 11 C -0.842 4.842 12 H 0.069 0.931 13 C 0.070 3.930 14 N -0.894 5.894 15 Si 0.968 3.032 16 H -0.285 1.285 17 H -0.263 1.263 18 H -0.243 1.243 19 H 0.079 0.921 20 H 0.077 0.923 21 H 0.098 0.902 22 H 0.408 0.592 23 H 0.408 0.592 24 H 0.152 0.848 25 H 0.134 0.866 26 H 0.079 0.921 27 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.241 15.399 1.781 15.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.107 4.107 3 C 0.092 3.908 4 N -0.404 5.404 5 C -0.204 4.204 6 C -0.123 4.123 7 C -0.177 4.177 8 C -0.519 4.519 9 S 1.637 4.363 10 O -0.983 6.983 11 C -0.982 4.982 12 H 0.088 0.912 13 C -0.139 4.139 14 N -0.528 5.528 15 Si 0.789 3.211 16 H -0.210 1.210 17 H -0.187 1.187 18 H -0.166 1.166 19 H 0.098 0.902 20 H 0.095 0.905 21 H 0.117 0.883 22 H 0.238 0.762 23 H 0.239 0.761 24 H 0.169 0.831 25 H 0.152 0.848 26 H 0.097 0.903 27 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.552 14.642 2.646 15.297 hybrid contribution 2.079 -0.489 -2.257 3.108 sum -1.472 14.153 0.389 14.234 Atomic orbital electron populations 1.20903 0.88863 1.04481 1.03650 1.19326 0.97237 0.89828 1.04319 1.17758 0.91554 0.87052 0.94402 1.42308 1.09472 1.03741 1.84883 1.20876 0.92538 0.98449 1.08530 1.21097 1.00096 0.91840 0.99252 1.20770 0.94576 0.97781 1.04619 1.28292 1.02479 1.16066 1.05056 1.66675 1.00498 0.77529 0.91598 1.92662 1.61286 1.59631 1.84708 1.27658 1.44523 1.13697 1.12325 0.91246 1.25654 0.91397 0.92954 1.03921 1.69907 1.34464 1.11521 1.36953 0.85495 0.78510 0.79339 0.77744 1.21047 1.18694 1.16616 0.90248 0.90454 0.88317 0.76217 0.76122 0.83059 0.84829 0.90314 0.90097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.40 9.08 71.24 0.65 -2.76 15 2 C -0.10 -3.64 5.90 -19.73 -0.12 -3.76 15 3 C 0.20 5.92 6.74 38.22 0.26 6.18 15 4 N -0.86 -16.26 8.99 -51.37 -0.46 -16.72 15 5 C -0.18 -5.47 9.90 22.40 0.22 -5.25 15 6 C -0.10 -3.80 10.04 22.25 0.22 -3.58 15 7 C -0.16 -7.43 9.46 22.29 0.21 -7.22 15 8 C -0.42 -19.61 5.60 22.25 0.12 -19.49 15 9 S 1.43 75.88 11.48 -56.49 -0.65 75.23 15 10 O -0.99 -65.62 16.38 -148.98 -2.44 -68.06 15 11 C -0.84 -48.26 9.34 67.73 0.63 -47.63 15 12 H 0.07 3.97 7.81 -2.91 -0.02 3.95 15 13 C 0.07 3.92 5.46 84.65 0.46 4.38 15 14 N -0.89 -51.32 13.19 21.45 0.28 -51.04 15 15 Si 0.97 42.86 29.54 68.60 2.03 44.89 15 16 H -0.28 -13.12 7.11 99.48 0.71 -12.41 15 17 H -0.26 -10.81 7.11 99.48 0.71 -10.11 15 18 H -0.24 -9.75 7.11 99.48 0.71 -9.05 15 19 H 0.08 2.15 8.14 -2.39 -0.02 2.13 15 20 H 0.08 2.22 6.54 -2.38 -0.02 2.20 15 21 H 0.10 1.87 6.83 -2.39 -0.02 1.86 15 22 H 0.41 5.44 8.84 -92.71 -0.82 4.62 15 23 H 0.41 6.15 6.94 -92.71 -0.64 5.50 15 24 H 0.15 3.30 8.06 -2.91 -0.02 3.27 15 25 H 0.13 4.14 8.06 -2.91 -0.02 4.11 15 26 H 0.08 4.29 7.22 -2.91 -0.02 4.27 15 27 H 0.29 15.14 8.31 -92.71 -0.77 14.37 15 Total: -1.00 -81.25 249.17 1.17 -80.08 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -0.26 Total: 14.72 kcal Atomic # 6 Polarization: -81.77 SS G_CDS: 2.66 Total: -79.11 kcal Atomic # 7 Polarization: -67.58 SS G_CDS: -0.18 Total: -67.76 kcal Atomic # 8 Polarization: -65.62 SS G_CDS: -2.44 Total: -68.06 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Atomic # 16 Polarization: 75.88 SS G_CDS: -0.65 Total: 75.23 kcal Total: -81.25 1.17 -80.08 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088066083.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.644 kcal (2) G-P(sol) polarization free energy of solvation -81.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds