Wall clock time and date at job start Mon Mar 30 2020 02:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38121 * 120.03716 * 2 1 4 4 C 1.38269 * 120.07065 * 180.02562 * 3 2 1 5 5 C 1.38308 * 120.15155 * 0.02562 * 4 3 2 6 6 C 1.38081 * 120.07401 * 0.25953 * 5 4 3 7 7 S 1.76195 * 120.03793 * 179.72290 * 6 5 4 8 8 O 1.42096 * 103.00062 * 348.12498 * 7 6 5 9 9 C 1.76206 * 103.00105 * 94.99477 * 7 6 5 10 10 H 1.07995 * 119.99762 * 0.02562 * 9 7 6 11 11 C 1.37877 * 119.99934 * 179.97438 * 9 7 6 12 12 N 1.31515 * 120.00106 * 0.02562 * 11 9 7 13 13 Si 1.86798 * 119.99934 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47114 * 89.99764 * 13 11 9 15 15 H 1.48495 * 109.47113 * 210.00022 * 13 11 9 16 16 H 1.48501 * 109.46991 * 330.00271 * 13 11 9 17 17 C 1.38892 * 120.03227 * 180.02562 * 2 1 3 18 18 N 1.39666 * 120.07673 * 359.97438 * 17 2 1 19 19 H 1.09006 * 109.47057 * 90.00179 * 1 2 3 20 20 H 1.08999 * 109.47649 * 210.00090 * 1 2 3 21 21 H 1.09001 * 109.47452 * 330.00694 * 1 2 3 22 22 H 1.07997 * 119.96660 * 359.97438 * 3 2 1 23 23 H 1.08000 * 119.92004 * 180.02562 * 4 3 2 24 24 H 1.08002 * 119.95989 * 179.97438 * 5 4 3 25 25 H 0.97004 * 120.00014 * 179.97438 * 12 11 9 26 26 H 0.96998 * 120.00355 * 359.97438 * 18 17 2 27 27 H 0.97009 * 119.99893 * 179.97438 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1957 0.0000 4 6 3.5811 1.1965 -0.0005 5 6 4.2765 0.0010 -0.0016 6 6 3.5915 -1.1979 -0.0076 7 16 4.4783 -2.7204 -0.0163 8 8 5.8098 -2.3131 -0.2999 9 6 4.5499 -3.1473 1.6918 10 1 4.0970 -2.5012 2.4292 11 6 5.1830 -4.3067 2.0867 12 7 5.7340 -5.0937 1.1885 13 14 5.2582 -4.7596 3.8973 14 1 4.0727 -5.5806 4.2519 15 1 6.4956 -5.5367 4.1622 16 1 5.2660 -3.5216 4.7173 17 6 2.2021 -1.2024 -0.0005 18 7 1.5061 -2.4133 -0.0005 19 1 -0.3633 0.0000 -1.0277 20 1 -0.3634 -0.8899 0.5138 21 1 -0.3634 0.8900 0.5137 22 1 1.6584 2.1310 -0.0004 23 1 4.1192 2.1329 -0.0001 24 1 5.3565 0.0052 -0.0024 25 1 6.1798 -5.9092 1.4664 26 1 0.5361 -2.4152 0.0002 27 1 1.9928 -3.2525 -0.0013 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088068953.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:26 Heat of formation + Delta-G solvation = -60.279110 kcal Electronic energy + Delta-G solvation = -13215.180240 eV Core-core repulsion = 10869.395295 eV Total energy + Delta-G solvation = -2345.784945 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.24769 -36.08416 -35.22381 -34.88105 -33.27337 -29.69454 -27.88659 -27.46645 -23.49449 -22.08420 -20.04704 -18.23656 -17.99244 -17.40652 -17.09134 -16.02642 -15.34408 -15.00463 -14.85373 -14.63432 -14.22870 -13.78791 -13.34564 -13.02206 -12.98741 -12.93748 -12.66443 -12.31230 -12.20538 -11.89495 -11.48882 -11.06030 -10.49610 -9.72604 -9.04291 -8.49160 -8.20704 -6.95804 0.36003 0.76958 1.28965 1.33281 1.43988 1.95995 2.35038 2.73766 2.89348 3.12471 3.55403 3.91253 4.12748 4.22759 4.47166 4.52608 4.77569 4.96553 4.99283 5.11054 5.39845 5.40420 5.42868 5.61597 5.73626 6.10760 6.11714 6.66843 6.98881 7.15031 8.42787 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.034570 B = 0.009547 C = 0.008811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.745899 B = 2932.142311 C = 3177.240270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.187 4.187 3 C -0.056 4.056 4 C -0.206 4.206 5 C -0.054 4.054 6 C -0.546 4.546 7 S 1.435 4.565 8 O -0.985 6.985 9 C -0.845 4.845 10 H 0.065 0.935 11 C 0.071 3.929 12 N -0.893 5.893 13 Si 0.967 3.033 14 H -0.239 1.239 15 H -0.273 1.273 16 H -0.282 1.282 17 C 0.278 3.722 18 N -0.856 5.856 19 H 0.081 0.919 20 H 0.071 0.929 21 H 0.079 0.921 22 H 0.155 0.845 23 H 0.128 0.872 24 H 0.081 0.919 25 H 0.289 0.711 26 H 0.414 0.586 27 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.705 4.287 -1.879 15.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.193 4.193 3 C -0.075 4.075 4 C -0.227 4.227 5 C -0.074 4.074 6 C -0.646 4.646 7 S 1.637 4.363 8 O -0.981 6.981 9 C -0.984 4.984 10 H 0.084 0.916 11 C -0.138 4.138 12 N -0.527 5.527 13 Si 0.789 3.211 14 H -0.162 1.162 15 H -0.198 1.198 16 H -0.207 1.207 17 C 0.169 3.831 18 N -0.398 5.398 19 H 0.099 0.901 20 H 0.090 0.910 21 H 0.098 0.902 22 H 0.173 0.827 23 H 0.146 0.854 24 H 0.099 0.901 25 H 0.099 0.901 26 H 0.247 0.753 27 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -14.240 3.648 -2.744 14.953 hybrid contribution 1.734 1.094 2.302 3.082 sum -12.506 4.742 -0.442 13.382 Atomic orbital electron populations 1.20640 0.88036 1.03571 1.03119 1.19909 0.97858 0.91201 1.10298 1.21198 0.93024 0.98290 0.94955 1.21116 0.95656 0.96853 1.09069 1.20761 0.98317 0.93478 0.94850 1.27893 1.02403 1.15820 1.18484 1.66267 0.89449 0.89382 0.91215 1.92688 1.40260 1.80352 1.84751 1.27778 1.45013 1.12846 1.12779 0.91638 1.25632 0.90454 0.94048 1.03710 1.69908 1.32723 1.13389 1.36709 0.85465 0.79480 0.78305 0.77853 1.16241 1.19776 1.20737 1.17142 0.88606 0.87875 0.89503 1.42649 1.09719 1.04591 1.82847 0.90087 0.90996 0.90237 0.82722 0.85369 0.90059 0.90132 0.75322 0.76499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.82 9.57 71.24 0.68 -1.14 15 2 C -0.19 -5.55 5.90 -19.74 -0.12 -5.67 15 3 C -0.06 -1.69 9.70 22.25 0.22 -1.47 15 4 C -0.21 -7.63 10.04 22.29 0.22 -7.40 15 5 C -0.05 -2.56 9.46 22.25 0.21 -2.35 15 6 C -0.55 -25.09 5.62 22.40 0.13 -24.97 15 7 S 1.43 74.80 11.90 -56.49 -0.67 74.12 15 8 O -0.99 -64.97 16.38 -148.98 -2.44 -67.41 15 9 C -0.84 -47.99 9.34 67.73 0.63 -47.36 15 10 H 0.07 3.77 7.81 -2.91 -0.02 3.75 15 11 C 0.07 3.94 5.46 84.65 0.46 4.40 15 12 N -0.89 -50.68 13.19 21.45 0.28 -50.40 15 13 Si 0.97 42.77 29.54 68.60 2.03 44.79 15 14 H -0.24 -9.35 7.11 99.48 0.71 -8.64 15 15 H -0.27 -11.67 7.11 99.48 0.71 -10.96 15 16 H -0.28 -12.93 7.11 99.48 0.71 -12.23 15 17 C 0.28 9.95 6.72 38.22 0.26 10.21 15 18 N -0.86 -23.71 8.92 -51.37 -0.46 -24.17 15 19 H 0.08 1.26 8.14 -2.38 -0.02 1.24 15 20 H 0.07 1.17 6.55 -2.39 -0.02 1.15 15 21 H 0.08 1.24 8.09 -2.39 -0.02 1.22 15 22 H 0.16 3.30 8.06 -2.91 -0.02 3.28 15 23 H 0.13 4.08 8.06 -2.91 -0.02 4.05 15 24 H 0.08 4.38 7.22 -2.91 -0.02 4.36 15 25 H 0.29 14.95 8.31 -92.71 -0.77 14.18 15 26 H 0.41 7.95 6.83 -92.71 -0.63 7.32 15 27 H 0.40 11.52 7.34 -92.70 -0.68 10.84 15 Total: -1.00 -80.59 249.48 1.32 -79.27 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: -0.11 Total: 19.55 kcal Atomic # 6 Polarization: -78.44 SS G_CDS: 2.69 Total: -75.75 kcal Atomic # 7 Polarization: -74.39 SS G_CDS: -0.18 Total: -74.57 kcal Atomic # 8 Polarization: -64.97 SS G_CDS: -2.44 Total: -67.41 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.79 kcal Atomic # 16 Polarization: 74.80 SS G_CDS: -0.67 Total: 74.12 kcal Total: -80.59 1.32 -79.27 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088068953.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.987 kcal (2) G-P(sol) polarization free energy of solvation -80.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds