Wall clock time and date at job start Mon Mar 30 2020 03:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38270 * 119.98898 * 2 1 4 4 C 1.38221 * 120.02262 * 179.97438 * 3 2 1 5 5 C 1.38234 * 120.01505 * 359.95649 * 4 3 2 6 6 C 1.38335 * 119.98491 * 359.76673 * 5 4 3 7 7 Cl 1.73607 * 120.01312 * 180.27568 * 6 5 4 8 8 C 1.38183 * 119.99624 * 179.97438 * 2 1 3 9 9 C 1.50702 * 120.00551 * 0.03159 * 8 2 1 10 10 H 1.09000 * 109.47244 * 348.94846 * 9 8 2 11 11 N 1.46900 * 109.46937 * 228.94998 * 9 8 2 12 12 C 1.50697 * 109.47397 * 108.94854 * 9 8 2 13 13 H 1.08008 * 120.00051 * 359.97438 * 12 9 8 14 14 C 1.37872 * 120.00220 * 180.02562 * 12 9 8 15 15 N 1.31516 * 120.00056 * 359.97438 * 14 12 9 16 16 Si 1.86804 * 120.00204 * 179.97438 * 14 12 9 17 17 H 1.48501 * 109.46988 * 90.00041 * 16 14 12 18 18 H 1.48500 * 109.47352 * 209.99967 * 16 14 12 19 19 H 1.48496 * 109.47151 * 330.00237 * 16 14 12 20 20 H 1.08996 * 109.47007 * 270.02760 * 1 2 3 21 21 H 1.09003 * 109.47093 * 30.02965 * 1 2 3 22 22 H 1.09003 * 109.46613 * 150.02090 * 1 2 3 23 23 H 1.07997 * 119.99222 * 359.96790 * 3 2 1 24 24 H 1.07999 * 119.99551 * 179.97438 * 4 3 2 25 25 H 1.08005 * 120.00902 * 180.02562 * 5 4 3 26 26 H 1.00904 * 111.00166 * 162.17458 * 11 9 8 27 27 H 1.00901 * 111.00176 * 286.12071 * 11 9 8 28 28 H 0.97003 * 120.00285 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1976 0.0000 4 6 3.5803 1.1984 0.0005 5 6 4.2725 0.0018 0.0020 6 6 3.5816 -1.1966 0.0078 7 17 4.4501 -2.6997 0.0168 8 6 2.1979 -1.1967 0.0005 9 6 1.4444 -2.5019 0.0004 10 1 0.3891 -2.3123 0.1969 11 7 1.9868 -3.3805 1.0453 12 6 1.5934 -3.1679 -1.3432 13 1 2.1752 -2.6933 -2.1196 14 6 0.9862 -4.3825 -1.5817 15 7 0.2773 -4.9602 -0.6365 16 14 1.1703 -5.2077 -3.2475 17 1 2.3656 -6.0888 -3.2339 18 1 -0.0397 -6.0193 -3.5343 19 1 1.3315 -4.1710 -4.2983 20 1 -0.3633 0.0005 1.0276 21 1 -0.3633 0.8897 -0.5143 22 1 -0.3633 -0.8902 -0.5135 23 1 1.6578 2.1327 -0.0005 24 1 4.1197 2.1341 0.0001 25 1 5.3526 0.0026 0.0028 26 1 1.3393 -4.1222 1.2662 27 1 2.8845 -3.7531 0.7744 28 1 -0.1502 -5.8146 -0.8044 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095668481.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:45 Heat of formation + Delta-G solvation = 9.314913 kcal Electronic energy + Delta-G solvation = -13519.970185 eV Core-core repulsion = 11175.159357 eV Total energy + Delta-G solvation = -2344.810828 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.00311 -35.69574 -34.64268 -32.17007 -31.29761 -29.25710 -26.43503 -25.77604 -23.01941 -21.02743 -19.78565 -16.60123 -16.09761 -15.31392 -14.76768 -14.33485 -13.76285 -13.42423 -12.88560 -12.67902 -12.33787 -12.17770 -11.74865 -11.42847 -11.00766 -10.87996 -10.72457 -10.64948 -10.51176 -9.93179 -9.87840 -9.23777 -8.55497 -8.01330 -7.85528 -7.11459 -6.05998 -4.18776 1.81581 1.98721 3.01151 3.24753 3.31803 3.36113 4.24545 4.39994 5.18486 5.33691 5.37657 5.58035 5.84925 5.87563 6.09732 6.21790 6.25683 6.54504 6.66422 6.82239 6.89829 7.01623 7.09738 7.44383 7.68917 7.78844 8.14174 8.76308 8.99666 9.22232 9.50556 10.93274 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.028558 B = 0.011458 C = 0.009861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.227195 B = 2443.141801 C = 2838.845618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.083 4.083 3 C -0.124 4.124 4 C -0.134 4.134 5 C -0.128 4.128 6 C -0.017 4.017 7 Cl -0.061 7.061 8 C -0.017 4.017 9 C 0.235 3.765 10 H 0.053 0.947 11 N -0.856 5.856 12 C -0.531 4.531 13 H 0.055 0.945 14 C 0.067 3.933 15 N -0.895 5.895 16 Si 0.893 3.107 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.274 1.274 20 H 0.065 0.935 21 H 0.056 0.944 22 H 0.083 0.917 23 H 0.116 0.884 24 H 0.118 0.882 25 H 0.120 0.880 26 H 0.343 0.657 27 H 0.327 0.673 28 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.903 8.226 1.224 9.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.083 4.083 3 C -0.142 4.142 4 C -0.152 4.152 5 C -0.146 4.146 6 C -0.043 4.043 7 Cl -0.032 7.032 8 C -0.018 4.018 9 C 0.125 3.875 10 H 0.071 0.929 11 N -0.390 5.390 12 C -0.570 4.570 13 H 0.073 0.927 14 C -0.135 4.135 15 N -0.534 5.534 16 Si 0.721 3.279 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.198 1.198 20 H 0.084 0.916 21 H 0.075 0.925 22 H 0.102 0.898 23 H 0.134 0.866 24 H 0.136 0.864 25 H 0.138 0.862 26 H 0.157 0.843 27 H 0.144 0.856 28 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.866 8.564 1.728 9.554 hybrid contribution 0.170 -1.368 -1.731 2.213 sum 4.037 7.196 -0.003 8.251 Atomic orbital electron populations 1.20812 0.91193 1.02979 1.01992 1.19732 0.96306 0.91929 1.00373 1.20959 0.94116 0.97253 1.01919 1.20780 0.94186 0.96855 1.03422 1.20901 0.99534 0.91199 1.03009 1.20671 0.92388 0.86356 1.04933 1.98270 1.75306 1.32953 1.96643 1.20369 0.91709 0.97250 0.92474 1.18072 0.93597 0.85414 0.90446 0.92874 1.59752 1.08683 1.26367 1.44225 1.21682 1.31926 1.04636 0.98794 0.92714 1.24938 0.94507 0.97084 0.96971 1.69803 1.33342 1.17468 1.32793 0.86568 0.77564 0.79481 0.84302 1.20630 1.21165 1.19846 0.91648 0.92477 0.89789 0.86571 0.86358 0.86191 0.84303 0.85612 0.92634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.95 9.27 36.01 0.33 -1.61 15 2 C -0.08 -1.59 5.88 -104.63 -0.62 -2.20 15 3 C -0.12 -2.03 9.70 -39.58 -0.38 -2.42 15 4 C -0.13 -2.10 10.05 -39.59 -0.40 -2.50 15 5 C -0.13 -2.22 9.83 -39.55 -0.39 -2.61 15 6 C -0.02 -0.34 6.14 -39.50 -0.24 -0.59 15 7 Cl -0.06 -1.24 24.19 -51.86 -1.25 -2.50 15 8 C -0.02 -0.37 4.89 -104.59 -0.51 -0.88 15 9 C 0.23 5.83 2.42 -70.02 -0.17 5.66 15 10 H 0.05 1.39 5.76 -51.93 -0.30 1.09 15 11 N -0.86 -21.06 8.73 -6.65 -0.06 -21.11 15 12 C -0.53 -14.20 7.66 -34.44 -0.26 -14.46 15 13 H 0.05 1.51 7.74 -52.48 -0.41 1.10 15 14 C 0.07 1.81 5.39 -17.82 -0.10 1.71 15 15 N -0.89 -24.58 11.80 55.43 0.65 -23.93 15 16 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 15 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 18 H -0.29 -6.73 7.11 56.52 0.40 -6.32 15 19 H -0.27 -6.49 7.11 56.52 0.40 -6.09 15 20 H 0.06 1.05 8.14 -51.93 -0.42 0.62 15 21 H 0.06 0.82 8.09 -51.93 -0.42 0.40 15 22 H 0.08 1.63 6.31 -51.93 -0.33 1.31 15 23 H 0.12 1.55 8.06 -52.49 -0.42 1.12 15 24 H 0.12 1.45 8.06 -52.49 -0.42 1.03 15 25 H 0.12 1.79 8.06 -52.48 -0.42 1.37 15 26 H 0.34 8.87 7.57 -39.29 -0.30 8.57 15 27 H 0.33 7.94 5.19 -39.29 -0.20 7.74 15 28 H 0.26 6.97 8.31 -40.82 -0.34 6.63 15 LS Contribution 248.09 15.07 3.74 3.74 Total: -1.00 -27.75 248.09 -7.46 -35.21 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -2.78 Total: 12.31 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: -2.74 Total: -19.90 kcal Atomic # 7 Polarization: -45.64 SS G_CDS: 0.60 Total: -45.04 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 17 Polarization: -1.24 SS G_CDS: -1.25 Total: -2.50 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -27.75 -7.46 -35.21 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095668481.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.525 kcal (2) G-P(sol) polarization free energy of solvation -27.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds