Wall clock time and date at job start Mon Mar 30 2020 03:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38270 * 119.98898 * 2 1 4 4 C 1.38221 * 120.02262 * 179.97438 * 3 2 1 5 5 C 1.38234 * 120.01505 * 359.95649 * 4 3 2 6 6 C 1.38335 * 119.98491 * 359.76673 * 5 4 3 7 7 Cl 1.73607 * 120.01312 * 180.27568 * 6 5 4 8 8 C 1.38183 * 119.99624 * 179.97438 * 2 1 3 9 9 C 1.50702 * 120.00551 * 0.03159 * 8 2 1 10 10 H 1.09000 * 109.47244 * 348.94846 * 9 8 2 11 11 N 1.46900 * 109.46937 * 228.94998 * 9 8 2 12 12 C 1.50697 * 109.47397 * 108.94854 * 9 8 2 13 13 H 1.08008 * 120.00051 * 359.97438 * 12 9 8 14 14 C 1.37872 * 120.00220 * 180.02562 * 12 9 8 15 15 N 1.31516 * 120.00056 * 359.97438 * 14 12 9 16 16 Si 1.86804 * 120.00204 * 179.97438 * 14 12 9 17 17 H 1.48501 * 109.46988 * 90.00041 * 16 14 12 18 18 H 1.48500 * 109.47352 * 209.99967 * 16 14 12 19 19 H 1.48496 * 109.47151 * 330.00237 * 16 14 12 20 20 H 1.08996 * 109.47007 * 270.02760 * 1 2 3 21 21 H 1.09003 * 109.47093 * 30.02965 * 1 2 3 22 22 H 1.09003 * 109.46613 * 150.02090 * 1 2 3 23 23 H 1.07997 * 119.99222 * 359.96790 * 3 2 1 24 24 H 1.07999 * 119.99551 * 179.97438 * 4 3 2 25 25 H 1.08005 * 120.00902 * 180.02562 * 5 4 3 26 26 H 1.00904 * 111.00166 * 162.17458 * 11 9 8 27 27 H 1.00901 * 111.00176 * 286.12071 * 11 9 8 28 28 H 0.97003 * 120.00285 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1976 0.0000 4 6 3.5803 1.1984 0.0005 5 6 4.2725 0.0018 0.0020 6 6 3.5816 -1.1966 0.0078 7 17 4.4501 -2.6997 0.0168 8 6 2.1979 -1.1967 0.0005 9 6 1.4444 -2.5019 0.0004 10 1 0.3891 -2.3123 0.1969 11 7 1.9868 -3.3805 1.0453 12 6 1.5934 -3.1679 -1.3432 13 1 2.1752 -2.6933 -2.1196 14 6 0.9862 -4.3825 -1.5817 15 7 0.2773 -4.9602 -0.6365 16 14 1.1703 -5.2077 -3.2475 17 1 2.3656 -6.0888 -3.2339 18 1 -0.0397 -6.0193 -3.5343 19 1 1.3315 -4.1710 -4.2983 20 1 -0.3633 0.0005 1.0276 21 1 -0.3633 0.8897 -0.5143 22 1 -0.3633 -0.8902 -0.5135 23 1 1.6578 2.1327 -0.0005 24 1 4.1197 2.1341 0.0001 25 1 5.3526 0.0026 0.0028 26 1 1.3393 -4.1222 1.2662 27 1 2.8845 -3.7531 0.7744 28 1 -0.1502 -5.8146 -0.8044 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095668481.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:45 Heat of formation + Delta-G solvation = -7.525813 kcal Electronic energy + Delta-G solvation = -13520.700453 eV Core-core repulsion = 11175.159357 eV Total energy + Delta-G solvation = -2345.541096 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.44874 -37.23251 -36.47344 -33.77019 -33.04540 -30.84394 -27.99625 -27.59554 -24.71457 -22.48170 -21.36272 -18.62088 -17.59894 -16.86141 -16.60369 -15.88027 -15.39731 -15.07421 -14.47058 -14.24570 -13.89807 -13.73420 -13.26410 -13.11311 -12.91384 -12.63285 -12.41763 -12.12965 -11.96968 -11.78976 -11.65114 -11.03633 -10.52617 -9.43868 -9.34858 -9.09654 -8.09518 -6.29778 0.42472 0.57504 1.34603 1.37023 1.46092 1.50162 2.37240 2.88135 3.10769 4.01093 4.11873 4.23174 4.49938 4.51334 4.73442 4.86596 4.87110 4.96131 5.13239 5.36445 5.36636 5.50986 5.60769 5.68794 5.88494 6.12056 6.18143 6.70580 6.98466 7.20012 7.42645 8.86546 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.028558 B = 0.011458 C = 0.009861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.227195 B = 2443.141801 C = 2838.845618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.099 4.099 3 C -0.117 4.117 4 C -0.119 4.119 5 C -0.130 4.130 6 C -0.040 4.040 7 Cl -0.074 7.074 8 C -0.058 4.058 9 C 0.239 3.761 10 H 0.030 0.970 11 N -0.850 5.850 12 C -0.536 4.536 13 H 0.040 0.960 14 C 0.024 3.976 15 N -0.916 5.916 16 Si 0.947 3.053 17 H -0.279 1.279 18 H -0.280 1.280 19 H -0.273 1.273 20 H 0.072 0.928 21 H 0.089 0.911 22 H 0.050 0.950 23 H 0.156 0.844 24 H 0.164 0.836 25 H 0.145 0.855 26 H 0.331 0.669 27 H 0.328 0.672 28 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.667 10.483 0.781 11.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.100 4.100 3 C -0.134 4.134 4 C -0.137 4.137 5 C -0.148 4.148 6 C -0.067 4.067 7 Cl -0.045 7.045 8 C -0.059 4.059 9 C 0.129 3.871 10 H 0.048 0.952 11 N -0.384 5.384 12 C -0.575 4.575 13 H 0.058 0.942 14 C -0.176 4.176 15 N -0.556 5.556 16 Si 0.774 3.226 17 H -0.205 1.205 18 H -0.206 1.206 19 H -0.198 1.198 20 H 0.090 0.910 21 H 0.108 0.892 22 H 0.069 0.931 23 H 0.173 0.827 24 H 0.182 0.818 25 H 0.162 0.838 26 H 0.144 0.856 27 H 0.145 0.855 28 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.639 10.832 1.284 11.853 hybrid contribution -0.050 -1.957 -1.567 2.508 sum 4.589 8.875 -0.283 9.996 Atomic orbital electron populations 1.20775 0.90447 1.02859 1.02423 1.20045 0.97204 0.92214 1.00558 1.21391 0.94752 0.97458 0.99846 1.21339 0.94144 0.97856 1.00320 1.21263 1.00918 0.90567 1.02066 1.20933 0.92172 0.87073 1.06541 1.98250 1.75286 1.34170 1.96811 1.20267 0.92567 0.96884 0.96223 1.17898 0.92940 0.86962 0.89329 0.95214 1.59805 1.08375 1.25849 1.44376 1.21815 1.31418 1.04874 0.99433 0.94168 1.25593 0.94437 0.97706 0.99854 1.69893 1.33928 1.17703 1.34109 0.85717 0.77572 0.78506 0.80844 1.20456 1.20553 1.19768 0.90957 0.89223 0.93142 0.82670 0.81805 0.83772 0.85631 0.85480 0.92599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.64 9.27 71.24 0.66 -2.98 15 2 C -0.10 -3.68 5.88 -19.87 -0.12 -3.80 15 3 C -0.12 -3.34 9.70 22.27 0.22 -3.12 15 4 C -0.12 -3.16 10.05 22.26 0.22 -2.93 15 5 C -0.13 -4.14 9.83 22.29 0.22 -3.92 15 6 C -0.04 -1.65 6.14 22.33 0.14 -1.51 15 7 Cl -0.07 -3.05 24.19 -2.72 -0.07 -3.11 15 8 C -0.06 -2.57 4.89 -19.84 -0.10 -2.67 15 9 C 0.24 12.21 2.42 43.42 0.11 12.31 15 10 H 0.03 1.64 5.76 -2.39 -0.01 1.62 15 11 N -0.85 -43.16 8.73 -174.95 -1.53 -44.69 15 12 C -0.54 -29.37 7.66 25.60 0.20 -29.18 15 13 H 0.04 2.27 7.74 -2.91 -0.02 2.25 15 14 C 0.02 1.31 5.39 84.65 0.46 1.76 15 15 N -0.92 -51.47 11.80 21.45 0.25 -51.21 15 16 Si 0.95 43.97 29.54 68.60 2.03 46.00 15 17 H -0.28 -12.79 7.11 99.48 0.71 -12.08 15 18 H -0.28 -12.65 7.11 99.48 0.71 -11.94 15 19 H -0.27 -12.52 7.11 99.48 0.71 -11.81 15 20 H 0.07 2.27 8.14 -2.39 -0.02 2.25 15 21 H 0.09 2.34 8.09 -2.39 -0.02 2.32 15 22 H 0.05 2.01 6.31 -2.39 -0.02 2.00 15 23 H 0.16 3.22 8.06 -2.91 -0.02 3.20 15 24 H 0.16 2.92 8.06 -2.91 -0.02 2.89 15 25 H 0.14 3.82 8.06 -2.91 -0.02 3.80 15 26 H 0.33 17.78 7.57 -89.69 -0.68 17.10 15 27 H 0.33 16.37 5.19 -89.69 -0.47 15.90 15 28 H 0.26 14.21 8.31 -92.71 -0.77 13.44 15 Total: -1.00 -60.85 248.09 2.73 -58.12 By element: Atomic # 1 Polarization: 30.89 SS G_CDS: 0.05 Total: 30.94 kcal Atomic # 6 Polarization: -38.04 SS G_CDS: 2.00 Total: -36.04 kcal Atomic # 7 Polarization: -94.63 SS G_CDS: -1.27 Total: -95.90 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 17 Polarization: -3.05 SS G_CDS: -0.07 Total: -3.11 kcal Total: -60.85 2.73 -58.12 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095668481.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.593 kcal (2) G-P(sol) polarization free energy of solvation -60.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds