Wall clock time and date at job start Mon Mar 30 2020 03:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38239 * 120.00971 * 2 1 4 4 C 1.38214 * 120.01500 * 180.02562 * 3 2 1 5 5 C 1.50697 * 119.98927 * 179.97438 * 4 3 2 6 6 H 1.09004 * 109.46623 * 340.02025 * 5 4 3 7 7 N 1.46901 * 109.47364 * 220.02180 * 5 4 3 8 8 C 1.50701 * 109.47239 * 100.02108 * 5 4 3 9 9 H 1.08000 * 119.99824 * 359.97438 * 8 5 4 10 10 C 1.37881 * 119.99814 * 180.02562 * 8 5 4 11 11 N 1.31513 * 119.99969 * 0.02562 * 10 8 5 12 12 Si 1.86803 * 119.99632 * 179.97438 * 10 8 5 13 13 H 1.48495 * 109.47003 * 60.00044 * 12 10 8 14 14 H 1.48503 * 109.46785 * 180.02562 * 12 10 8 15 15 H 1.48495 * 109.47107 * 299.99969 * 12 10 8 16 16 C 1.38270 * 120.02760 * 359.97438 * 4 3 2 17 17 C 1.38188 * 120.01208 * 0.02562 * 16 4 3 18 18 C 1.38337 * 120.00689 * 180.02562 * 2 1 3 19 19 Cl 1.73595 * 120.01149 * 0.25153 * 18 2 1 20 20 H 1.08992 * 109.47250 * 269.95750 * 1 2 3 21 21 H 1.09005 * 109.46944 * 29.95554 * 1 2 3 22 22 H 1.09003 * 109.47196 * 149.95460 * 1 2 3 23 23 H 1.07997 * 119.98693 * 359.97438 * 3 2 1 24 24 H 1.00897 * 110.99740 * 300.00029 * 7 5 4 25 25 H 1.00903 * 110.99864 * 63.95351 * 7 5 4 26 26 H 0.97004 * 119.99554 * 179.97438 * 11 10 8 27 27 H 1.08002 * 119.99274 * 179.97438 * 16 4 3 28 28 H 1.07996 * 120.01013 * 179.97438 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.3336 2.5025 -0.0011 6 1 3.6784 3.2998 -0.3522 7 7 5.4967 2.3964 -0.8922 8 6 4.7994 2.8144 1.3978 9 1 4.5723 2.1355 2.2064 10 6 5.5144 3.9670 1.6454 11 7 5.7896 4.7944 0.6609 12 14 6.0911 4.3539 3.3795 13 1 6.9838 3.2680 3.8581 14 1 6.8323 5.6407 3.3791 15 1 4.9151 4.4608 4.2799 16 6 4.2725 0.0001 -0.0005 17 6 3.5825 -1.1971 -0.0005 18 6 2.1988 -1.1980 -0.0005 19 17 1.3313 -2.7016 -0.0078 20 1 -0.3633 -0.0008 1.0276 21 1 -0.3633 0.8904 -0.5132 22 1 -0.3634 -0.8896 -0.5145 23 1 1.6583 2.1323 -0.0004 24 1 6.1197 1.6635 -0.5877 25 1 5.2078 2.2516 -1.8481 26 1 6.2923 5.6054 0.8352 27 1 5.3525 0.0009 -0.0014 28 1 4.1231 -2.1321 -0.0010 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095671982.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:52 Heat of formation + Delta-G solvation = 7.158439 kcal Electronic energy + Delta-G solvation = -13020.420880 eV Core-core repulsion = 10675.516540 eV Total energy + Delta-G solvation = -2344.904339 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.12941 -36.31446 -34.63259 -32.32233 -31.45485 -29.47839 -26.49138 -25.98201 -22.81111 -21.80143 -19.48325 -16.53384 -16.41569 -15.32064 -14.84403 -14.25628 -13.99623 -13.82797 -13.26132 -12.72149 -12.50671 -12.19417 -12.12306 -11.50317 -11.42515 -11.07627 -10.92384 -10.75334 -10.62940 -10.31732 -9.84165 -9.27778 -8.47286 -8.37560 -7.92509 -7.13558 -5.91906 -4.07523 1.69783 1.76051 2.45734 3.33242 3.38034 3.40785 4.13704 4.47388 5.10492 5.13968 5.33162 5.48769 5.75931 5.79229 5.80829 5.99345 6.04150 6.23352 6.33992 6.42707 6.69369 6.88262 6.98431 7.37351 7.49494 7.86056 8.12335 8.57060 8.94551 9.09253 9.61501 11.12289 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.042251 B = 0.006828 C = 0.006748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.547621 B = 4099.573396 C = 4148.526637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.080 4.080 3 C -0.112 4.112 4 C -0.062 4.062 5 C 0.253 3.747 6 H 0.049 0.951 7 N -0.809 5.809 8 C -0.533 4.533 9 H 0.053 0.947 10 C 0.085 3.915 11 N -0.846 5.846 12 Si 0.886 3.114 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.278 1.278 16 C -0.116 4.116 17 C -0.109 4.109 18 C -0.060 4.060 19 Cl -0.093 7.093 20 H 0.070 0.930 21 H 0.067 0.933 22 H 0.067 0.933 23 H 0.127 0.873 24 H 0.318 0.682 25 H 0.299 0.701 26 H 0.257 0.743 27 H 0.126 0.874 28 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.058 -9.956 -2.308 12.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.081 4.081 3 C -0.131 4.131 4 C -0.064 4.064 5 C 0.143 3.857 6 H 0.066 0.934 7 N -0.335 5.335 8 C -0.572 4.572 9 H 0.072 0.928 10 C -0.122 4.122 11 N -0.480 5.480 12 Si 0.713 3.287 13 H -0.203 1.203 14 H -0.213 1.213 15 H -0.203 1.203 16 C -0.135 4.135 17 C -0.128 4.128 18 C -0.086 4.086 19 Cl -0.065 7.065 20 H 0.088 0.912 21 H 0.086 0.914 22 H 0.086 0.914 23 H 0.144 0.856 24 H 0.131 0.869 25 H 0.109 0.891 26 H 0.067 0.933 27 H 0.144 0.856 28 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.861 -9.129 -2.150 11.620 hybrid contribution -0.015 -0.943 0.863 1.279 sum -6.876 -10.073 -1.287 12.263 Atomic orbital electron populations 1.20805 0.91117 1.02750 1.02413 1.19714 0.96116 0.91658 1.00632 1.20970 0.94219 0.96459 1.01404 1.21943 0.94192 0.99181 0.91120 1.18251 0.87493 0.86191 0.93774 0.93361 1.59201 1.18934 1.52577 1.02778 1.20764 1.37843 1.06948 0.91614 0.92849 1.24940 0.95218 0.95897 0.96182 1.70091 1.36884 1.10676 1.30391 0.86793 0.78917 0.77571 0.85379 1.20297 1.21303 1.20334 1.20945 1.00174 0.91195 1.01188 1.20920 0.91797 0.98800 1.01278 1.20586 0.92131 0.85550 1.10339 1.98300 1.77410 1.33429 1.97318 0.91177 0.91426 0.91422 0.85552 0.86937 0.89080 0.93304 0.85608 0.85988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.50 9.62 36.00 0.35 -1.15 15 2 C -0.08 -1.32 5.88 -104.59 -0.62 -1.93 15 3 C -0.11 -2.06 9.32 -39.59 -0.37 -2.43 15 4 C -0.06 -1.25 4.88 -104.62 -0.51 -1.76 15 5 C 0.25 6.01 2.85 -70.02 -0.20 5.81 15 6 H 0.05 1.26 8.00 -51.93 -0.42 0.84 15 7 N -0.81 -18.28 8.37 -6.65 -0.06 -18.34 15 8 C -0.53 -14.25 8.70 -34.44 -0.30 -14.55 15 9 H 0.05 1.44 7.74 -52.49 -0.41 1.04 15 10 C 0.08 2.32 5.39 -17.82 -0.10 2.22 15 11 N -0.85 -24.12 12.77 55.43 0.71 -23.41 15 12 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 15 13 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 14 H -0.29 -6.78 7.11 56.52 0.40 -6.38 15 15 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 16 C -0.12 -2.13 9.29 -39.59 -0.37 -2.50 15 17 C -0.11 -1.79 9.83 -39.55 -0.39 -2.18 15 18 C -0.06 -0.97 6.31 -39.49 -0.25 -1.22 15 19 Cl -0.09 -1.30 27.29 -51.86 -1.42 -2.72 15 20 H 0.07 0.87 8.14 -51.93 -0.42 0.45 15 21 H 0.07 0.80 8.09 -51.93 -0.42 0.38 15 22 H 0.07 0.83 6.90 -51.93 -0.36 0.47 15 23 H 0.13 2.23 8.04 -52.49 -0.42 1.80 15 24 H 0.32 6.80 7.34 -39.29 -0.29 6.51 15 25 H 0.30 6.04 9.06 -39.29 -0.36 5.68 15 26 H 0.26 7.05 8.31 -40.82 -0.34 6.71 15 27 H 0.13 2.22 6.66 -52.49 -0.35 1.87 15 28 H 0.12 1.73 8.06 -52.49 -0.42 1.30 15 LS Contribution 257.71 15.07 3.88 3.88 Total: -1.00 -28.24 257.71 -7.65 -35.89 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -3.00 Total: 8.39 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: -2.75 Total: -19.69 kcal Atomic # 7 Polarization: -42.41 SS G_CDS: 0.65 Total: -41.76 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -1.42 Total: -2.72 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -28.24 -7.65 -35.89 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095671982.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.046 kcal (2) G-P(sol) polarization free energy of solvation -28.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds