Wall clock time and date at job start Mon Mar 30 2020 03:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38239 * 120.00971 * 2 1 4 4 C 1.38214 * 120.01500 * 180.02562 * 3 2 1 5 5 C 1.50697 * 119.98927 * 179.97438 * 4 3 2 6 6 H 1.09004 * 109.46623 * 340.02025 * 5 4 3 7 7 N 1.46901 * 109.47364 * 220.02180 * 5 4 3 8 8 C 1.50701 * 109.47239 * 100.02108 * 5 4 3 9 9 H 1.08000 * 119.99824 * 359.97438 * 8 5 4 10 10 C 1.37881 * 119.99814 * 180.02562 * 8 5 4 11 11 N 1.31513 * 119.99969 * 0.02562 * 10 8 5 12 12 Si 1.86803 * 119.99632 * 179.97438 * 10 8 5 13 13 H 1.48495 * 109.47003 * 60.00044 * 12 10 8 14 14 H 1.48503 * 109.46785 * 180.02562 * 12 10 8 15 15 H 1.48495 * 109.47107 * 299.99969 * 12 10 8 16 16 C 1.38270 * 120.02760 * 359.97438 * 4 3 2 17 17 C 1.38188 * 120.01208 * 0.02562 * 16 4 3 18 18 C 1.38337 * 120.00689 * 180.02562 * 2 1 3 19 19 Cl 1.73595 * 120.01149 * 0.25153 * 18 2 1 20 20 H 1.08992 * 109.47250 * 269.95750 * 1 2 3 21 21 H 1.09005 * 109.46944 * 29.95554 * 1 2 3 22 22 H 1.09003 * 109.47196 * 149.95460 * 1 2 3 23 23 H 1.07997 * 119.98693 * 359.97438 * 3 2 1 24 24 H 1.00897 * 110.99740 * 300.00029 * 7 5 4 25 25 H 1.00903 * 110.99864 * 63.95351 * 7 5 4 26 26 H 0.97004 * 119.99554 * 179.97438 * 11 10 8 27 27 H 1.08002 * 119.99274 * 179.97438 * 16 4 3 28 28 H 1.07996 * 120.01013 * 179.97438 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.3336 2.5025 -0.0011 6 1 3.6784 3.2998 -0.3522 7 7 5.4967 2.3964 -0.8922 8 6 4.7994 2.8144 1.3978 9 1 4.5723 2.1355 2.2064 10 6 5.5144 3.9670 1.6454 11 7 5.7896 4.7944 0.6609 12 14 6.0911 4.3539 3.3795 13 1 6.9838 3.2680 3.8581 14 1 6.8323 5.6407 3.3791 15 1 4.9151 4.4608 4.2799 16 6 4.2725 0.0001 -0.0005 17 6 3.5825 -1.1971 -0.0005 18 6 2.1988 -1.1980 -0.0005 19 17 1.3313 -2.7016 -0.0078 20 1 -0.3633 -0.0008 1.0276 21 1 -0.3633 0.8904 -0.5132 22 1 -0.3634 -0.8896 -0.5145 23 1 1.6583 2.1323 -0.0004 24 1 6.1197 1.6635 -0.5877 25 1 5.2078 2.2516 -1.8481 26 1 6.2923 5.6054 0.8352 27 1 5.3525 0.0009 -0.0014 28 1 4.1231 -2.1321 -0.0010 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095671982.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:52 Heat of formation + Delta-G solvation = -9.772784 kcal Electronic energy + Delta-G solvation = -13021.155073 eV Core-core repulsion = 10675.516540 eV Total energy + Delta-G solvation = -2345.638532 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.52203 -37.60610 -36.29753 -33.93151 -33.11575 -31.00526 -27.95878 -27.71502 -24.53246 -23.17328 -21.04786 -18.47514 -17.83164 -16.79526 -16.64502 -15.88326 -15.65054 -15.04288 -14.76821 -14.33344 -14.02239 -13.51914 -13.35037 -13.12505 -12.98535 -12.71787 -12.43914 -12.31475 -12.27480 -11.68452 -11.58731 -11.20248 -10.54932 -9.72600 -9.39081 -8.87913 -7.98668 -6.20419 0.31214 0.39742 1.19896 1.44836 1.45001 1.52602 2.45440 2.77192 3.25338 3.86549 3.90191 4.14987 4.38297 4.43480 4.54210 4.74413 4.77225 4.79227 4.96201 5.19241 5.31944 5.32787 5.49290 5.74195 5.85775 5.94757 6.16981 6.64371 7.09734 7.25829 7.52183 9.04389 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.042251 B = 0.006828 C = 0.006748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.547621 B = 4099.573396 C = 4148.526637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.078 4.078 3 C -0.124 4.124 4 C -0.085 4.085 5 C 0.258 3.742 6 H 0.015 0.985 7 N -0.820 5.820 8 C -0.544 4.544 9 H 0.045 0.955 10 C 0.038 3.962 11 N -0.879 5.879 12 Si 0.946 3.054 13 H -0.273 1.273 14 H -0.285 1.285 15 H -0.274 1.274 16 C -0.123 4.123 17 C -0.104 4.104 18 C -0.062 4.062 19 Cl -0.067 7.067 20 H 0.080 0.920 21 H 0.078 0.922 22 H 0.079 0.921 23 H 0.125 0.875 24 H 0.324 0.676 25 H 0.312 0.688 26 H 0.256 0.744 27 H 0.127 0.873 28 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.811 -11.631 -1.817 14.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.079 4.079 3 C -0.143 4.143 4 C -0.087 4.087 5 C 0.148 3.852 6 H 0.032 0.968 7 N -0.347 5.347 8 C -0.582 4.582 9 H 0.063 0.937 10 C -0.166 4.166 11 N -0.514 5.514 12 Si 0.772 3.228 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.199 1.199 16 C -0.142 4.142 17 C -0.123 4.123 18 C -0.089 4.089 19 Cl -0.038 7.038 20 H 0.099 0.901 21 H 0.097 0.903 22 H 0.098 0.902 23 H 0.143 0.857 24 H 0.138 0.862 25 H 0.123 0.877 26 H 0.065 0.935 27 H 0.145 0.855 28 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -7.623 -10.821 -1.658 13.340 hybrid contribution 0.133 -0.533 0.673 0.869 sum -7.490 -11.355 -0.985 13.638 Atomic orbital electron populations 1.20878 0.88684 1.03963 1.03427 1.19997 0.97874 0.90898 0.99147 1.21023 0.93714 0.97519 1.02082 1.21583 0.94918 0.98142 0.94073 1.17882 0.87521 0.87304 0.92464 0.96760 1.59002 1.19011 1.53191 1.03478 1.21062 1.37487 1.06741 0.92933 0.93713 1.25645 0.95495 0.95876 0.99626 1.70212 1.37883 1.11078 1.32241 0.85829 0.78447 0.77339 0.81157 1.19854 1.21041 1.19946 1.20958 1.00332 0.91283 1.01628 1.21152 0.92154 0.98998 0.99989 1.20771 0.92413 0.86673 1.09033 1.98311 1.76793 1.31573 1.97128 0.90108 0.90284 0.90213 0.85728 0.86240 0.87671 0.93498 0.85503 0.83427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.67 9.62 71.23 0.69 -1.99 15 2 C -0.08 -2.43 5.88 -19.84 -0.12 -2.54 15 3 C -0.12 -4.56 9.32 22.26 0.21 -4.36 15 4 C -0.08 -3.45 4.88 -19.86 -0.10 -3.54 15 5 C 0.26 12.62 2.85 43.42 0.12 12.74 15 6 H 0.01 0.79 8.00 -2.38 -0.02 0.77 15 7 N -0.82 -37.71 8.37 -174.95 -1.46 -39.17 15 8 C -0.54 -29.53 8.70 25.60 0.22 -29.31 15 9 H 0.04 2.45 7.74 -2.91 -0.02 2.43 15 10 C 0.04 2.07 5.39 84.66 0.46 2.52 15 11 N -0.88 -50.95 12.77 21.45 0.27 -50.68 15 12 Si 0.95 43.44 29.54 68.60 2.03 45.47 15 13 H -0.27 -12.26 7.11 99.48 0.71 -11.56 15 14 H -0.28 -12.86 7.11 99.48 0.71 -12.16 15 15 H -0.27 -12.31 7.11 99.48 0.71 -11.61 15 16 C -0.12 -4.43 9.29 22.27 0.21 -4.22 15 17 C -0.10 -3.20 9.83 22.29 0.22 -2.99 15 18 C -0.06 -1.87 6.31 22.33 0.14 -1.73 15 19 Cl -0.07 -1.65 27.29 -2.72 -0.07 -1.72 15 20 H 0.08 1.77 8.14 -2.39 -0.02 1.75 15 21 H 0.08 1.69 8.09 -2.38 -0.02 1.67 15 22 H 0.08 1.69 6.90 -2.39 -0.02 1.68 15 23 H 0.12 4.47 8.04 -2.91 -0.02 4.45 15 24 H 0.32 14.03 7.34 -89.70 -0.66 13.37 15 25 H 0.31 12.81 9.06 -89.69 -0.81 12.00 15 26 H 0.26 14.24 8.31 -92.71 -0.77 13.47 15 27 H 0.13 4.42 6.66 -2.91 -0.02 4.40 15 28 H 0.15 3.71 8.06 -2.91 -0.02 3.69 15 Total: -1.00 -59.68 257.71 2.53 -57.15 By element: Atomic # 1 Polarization: 24.65 SS G_CDS: -0.28 Total: 24.37 kcal Atomic # 6 Polarization: -37.46 SS G_CDS: 2.05 Total: -35.41 kcal Atomic # 7 Polarization: -88.66 SS G_CDS: -1.19 Total: -89.85 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Atomic # 17 Polarization: -1.65 SS G_CDS: -0.07 Total: -1.72 kcal Total: -59.68 2.53 -57.15 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095671982.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.379 kcal (2) G-P(sol) polarization free energy of solvation -59.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds