Wall clock time and date at job start Mon Mar 30 2020 03:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38228 * 120.00608 * 2 1 4 4 C 1.38223 * 120.01104 * 180.02562 * 3 2 1 5 5 C 1.38262 * 120.02772 * 359.97438 * 4 3 2 6 6 C 1.50697 * 119.99315 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.47706 * 20.00208 * 6 5 4 8 8 N 1.46906 * 109.47064 * 140.00004 * 6 5 4 9 9 C 1.50701 * 109.47065 * 260.00014 * 6 5 4 10 10 H 1.08001 * 120.00367 * 0.02562 * 9 6 5 11 11 C 1.37884 * 119.99893 * 180.02562 * 9 6 5 12 12 N 1.31512 * 119.99827 * 180.02562 * 11 9 6 13 13 Si 1.86799 * 120.00046 * 359.97438 * 11 9 6 14 14 H 1.48503 * 109.47155 * 90.00195 * 13 11 9 15 15 H 1.48498 * 109.47312 * 210.00202 * 13 11 9 16 16 H 1.48507 * 109.47130 * 330.00611 * 13 11 9 17 17 C 1.38193 * 120.01456 * 0.27649 * 5 4 3 18 18 C 1.38330 * 120.00222 * 180.02562 * 2 1 3 19 19 Cl 1.73601 * 120.02057 * 0.02562 * 18 2 1 20 20 H 1.08994 * 109.47437 * 90.00069 * 1 2 3 21 21 H 1.09005 * 109.46761 * 210.00203 * 1 2 3 22 22 H 1.08997 * 109.47108 * 329.99919 * 1 2 3 23 23 H 1.07995 * 119.99823 * 0.02562 * 3 2 1 24 24 H 1.07997 * 119.98738 * 180.02562 * 4 3 2 25 25 H 1.00896 * 111.00309 * 296.04459 * 8 6 5 26 26 H 1.00902 * 110.99923 * 60.00622 * 8 6 5 27 27 H 0.97006 * 119.99800 * 179.97438 * 12 11 9 28 28 H 1.08003 * 120.01010 * 179.74240 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1970 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.2725 0.0001 -0.0005 6 6 5.7795 0.0012 -0.0017 7 1 6.1425 0.9672 0.3491 8 7 6.2706 -1.0591 0.8887 9 6 6.2809 -0.2458 -1.4012 10 1 5.5786 -0.3888 -2.2091 11 6 7.6364 -0.2893 -1.6503 12 7 8.0739 -0.5043 -2.8717 13 14 8.8511 -0.0413 -0.2531 14 1 9.1738 -1.3542 0.3613 15 1 10.0938 0.5767 -0.7813 16 1 8.2516 0.8508 0.7717 17 6 3.5825 -1.1972 -0.0058 18 6 2.1987 -1.1979 -0.0005 19 17 1.3313 -2.7017 -0.0019 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3633 0.8899 0.5138 23 1 1.6584 2.1323 0.0004 24 1 4.1202 2.1326 -0.0001 25 1 6.0018 -0.8817 1.8449 26 1 5.9475 -1.9653 0.5844 27 1 9.0275 -0.5345 -3.0470 28 1 4.1232 -2.1322 -0.0100 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095673330.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:54 Heat of formation + Delta-G solvation = 6.314219 kcal Electronic energy + Delta-G solvation = -13086.458113 eV Core-core repulsion = 10741.517165 eV Total energy + Delta-G solvation = -2344.940947 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.25447 -36.32751 -35.10703 -32.21857 -31.21133 -30.33602 -27.21989 -25.66811 -22.56653 -21.86268 -19.91156 -16.95113 -16.09319 -15.48371 -15.02743 -14.58323 -14.00198 -13.89016 -13.41201 -13.19611 -12.52431 -12.27164 -12.16738 -11.70979 -11.54329 -11.28090 -10.84498 -10.70766 -10.64532 -10.20086 -9.82430 -9.33516 -8.57768 -8.44444 -8.03462 -7.72402 -6.04830 -4.16270 1.57309 1.69454 2.41721 3.54291 3.58789 3.71250 4.04081 4.61277 5.02216 5.05058 5.20546 5.40400 5.54330 5.67669 5.80584 5.81802 5.86956 5.97224 6.11207 6.37525 6.58191 6.70840 6.75842 7.13349 7.24397 7.53487 8.07810 8.25500 8.61808 8.94744 9.57278 11.04385 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.040270 B = 0.007797 C = 0.007356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.148279 B = 3590.432338 C = 3805.549865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.103 4.103 3 C -0.111 4.111 4 C -0.112 4.112 5 C -0.059 4.059 6 C 0.216 3.784 7 H 0.054 0.946 8 N -0.840 5.840 9 C -0.520 4.520 10 H 0.072 0.928 11 C 0.083 3.917 12 N -0.897 5.897 13 Si 0.938 3.062 14 H -0.280 1.280 15 H -0.318 1.318 16 H -0.274 1.274 17 C -0.105 4.105 18 C -0.033 4.033 19 Cl -0.086 7.086 20 H 0.068 0.932 21 H 0.067 0.933 22 H 0.064 0.936 23 H 0.123 0.877 24 H 0.125 0.875 25 H 0.312 0.688 26 H 0.335 0.665 27 H 0.264 0.736 28 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.549 0.709 7.758 14.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.104 4.104 3 C -0.129 4.129 4 C -0.130 4.130 5 C -0.061 4.061 6 C 0.106 3.894 7 H 0.071 0.929 8 N -0.370 5.370 9 C -0.558 4.558 10 H 0.090 0.910 11 C -0.122 4.122 12 N -0.534 5.534 13 Si 0.770 3.230 14 H -0.206 1.206 15 H -0.248 1.248 16 H -0.200 1.200 17 C -0.124 4.124 18 C -0.060 4.060 19 Cl -0.057 7.057 20 H 0.087 0.913 21 H 0.086 0.914 22 H 0.083 0.917 23 H 0.141 0.859 24 H 0.143 0.857 25 H 0.123 0.877 26 H 0.149 0.851 27 H 0.074 0.926 28 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -11.743 0.767 7.412 13.908 hybrid contribution -0.407 -0.278 0.653 0.818 sum -12.150 0.489 8.064 14.591 Atomic orbital electron populations 1.20766 0.91045 1.02662 1.02333 1.19568 0.96092 0.91587 1.03141 1.20898 0.94268 0.96521 1.01263 1.21190 0.93612 0.98491 0.99742 1.21243 0.99765 0.91611 0.93512 1.18762 0.83528 0.92590 0.94471 0.92877 1.59369 1.66659 1.06409 1.04571 1.20733 0.92752 1.51773 0.90540 0.91025 1.25026 0.98708 0.92641 0.95816 1.69957 1.14779 1.48289 1.20362 0.85847 0.77512 0.78555 0.81091 1.20579 1.24816 1.19969 1.20852 0.91187 0.99410 1.00946 1.20752 0.92288 0.85823 1.07109 1.98317 1.77164 1.33146 1.97091 0.91291 0.91362 0.91710 0.85903 0.85673 0.87669 0.85070 0.92617 0.85310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 9.62 36.01 0.35 -0.96 15 2 C -0.10 -1.56 5.88 -104.59 -0.62 -2.17 15 3 C -0.11 -1.67 9.70 -39.59 -0.38 -2.06 15 4 C -0.11 -1.94 9.67 -39.58 -0.38 -2.32 15 5 C -0.06 -1.15 4.88 -104.63 -0.51 -1.66 15 6 C 0.22 4.82 2.34 -70.01 -0.16 4.66 15 7 H 0.05 1.22 7.06 -51.93 -0.37 0.85 15 8 N -0.84 -17.15 6.59 -6.65 -0.04 -17.19 15 9 C -0.52 -14.26 9.28 -34.44 -0.32 -14.58 15 10 H 0.07 2.18 7.98 -52.49 -0.42 1.76 15 11 C 0.08 2.36 5.47 -17.82 -0.10 2.26 15 12 N -0.90 -27.36 13.96 55.43 0.77 -26.59 15 13 Si 0.94 23.48 26.03 -169.99 -4.42 19.06 15 14 H -0.28 -7.02 7.11 56.52 0.40 -6.62 15 15 H -0.32 -8.09 7.11 56.52 0.40 -7.69 15 16 H -0.27 -6.61 6.54 56.52 0.37 -6.24 15 17 C -0.10 -1.93 9.07 -39.54 -0.36 -2.29 15 18 C -0.03 -0.55 6.32 -39.49 -0.25 -0.80 15 19 Cl -0.09 -1.26 27.30 -51.86 -1.42 -2.68 15 20 H 0.07 0.77 8.14 -51.93 -0.42 0.35 15 21 H 0.07 0.78 6.91 -51.93 -0.36 0.42 15 22 H 0.06 0.64 8.09 -51.93 -0.42 0.22 15 23 H 0.12 1.48 8.06 -52.49 -0.42 1.06 15 24 H 0.13 2.02 8.04 -52.49 -0.42 1.60 15 25 H 0.31 5.45 9.06 -39.29 -0.36 5.10 15 26 H 0.33 6.59 7.35 -39.29 -0.29 6.30 15 27 H 0.26 7.60 8.31 -40.82 -0.34 7.26 15 28 H 0.13 2.35 6.67 -52.48 -0.35 2.00 15 LS Contribution 252.53 15.07 3.81 3.81 Total: -1.00 -30.10 252.53 -7.03 -37.13 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -2.99 Total: 6.37 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: -2.74 Total: -19.92 kcal Atomic # 7 Polarization: -44.51 SS G_CDS: 0.73 Total: -43.78 kcal Atomic # 14 Polarization: 23.48 SS G_CDS: -4.42 Total: 19.06 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -1.42 Total: -2.68 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -30.10 -7.03 -37.13 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095673330.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.447 kcal (2) G-P(sol) polarization free energy of solvation -30.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds