Wall clock time and date at job start Mon Mar 30 2020 03:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38228 * 120.00608 * 2 1 4 4 C 1.38223 * 120.01104 * 180.02562 * 3 2 1 5 5 C 1.38262 * 120.02772 * 359.97438 * 4 3 2 6 6 C 1.50697 * 119.99315 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.47706 * 20.00208 * 6 5 4 8 8 N 1.46906 * 109.47064 * 140.00004 * 6 5 4 9 9 C 1.50701 * 109.47065 * 260.00014 * 6 5 4 10 10 H 1.08001 * 120.00367 * 0.02562 * 9 6 5 11 11 C 1.37884 * 119.99893 * 180.02562 * 9 6 5 12 12 N 1.31512 * 119.99827 * 180.02562 * 11 9 6 13 13 Si 1.86799 * 120.00046 * 359.97438 * 11 9 6 14 14 H 1.48503 * 109.47155 * 90.00195 * 13 11 9 15 15 H 1.48498 * 109.47312 * 210.00202 * 13 11 9 16 16 H 1.48507 * 109.47130 * 330.00611 * 13 11 9 17 17 C 1.38193 * 120.01456 * 0.27649 * 5 4 3 18 18 C 1.38330 * 120.00222 * 180.02562 * 2 1 3 19 19 Cl 1.73601 * 120.02057 * 0.02562 * 18 2 1 20 20 H 1.08994 * 109.47437 * 90.00069 * 1 2 3 21 21 H 1.09005 * 109.46761 * 210.00203 * 1 2 3 22 22 H 1.08997 * 109.47108 * 329.99919 * 1 2 3 23 23 H 1.07995 * 119.99823 * 0.02562 * 3 2 1 24 24 H 1.07997 * 119.98738 * 180.02562 * 4 3 2 25 25 H 1.00896 * 111.00309 * 296.04459 * 8 6 5 26 26 H 1.00902 * 110.99923 * 60.00622 * 8 6 5 27 27 H 0.97006 * 119.99800 * 179.97438 * 12 11 9 28 28 H 1.08003 * 120.01010 * 179.74240 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1970 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.2725 0.0001 -0.0005 6 6 5.7795 0.0012 -0.0017 7 1 6.1425 0.9672 0.3491 8 7 6.2706 -1.0591 0.8887 9 6 6.2809 -0.2458 -1.4012 10 1 5.5786 -0.3888 -2.2091 11 6 7.6364 -0.2893 -1.6503 12 7 8.0739 -0.5043 -2.8717 13 14 8.8511 -0.0413 -0.2531 14 1 9.1738 -1.3542 0.3613 15 1 10.0938 0.5767 -0.7813 16 1 8.2516 0.8508 0.7717 17 6 3.5825 -1.1972 -0.0058 18 6 2.1987 -1.1979 -0.0005 19 17 1.3313 -2.7017 -0.0019 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3633 0.8899 0.5138 23 1 1.6584 2.1323 0.0004 24 1 4.1202 2.1326 -0.0001 25 1 6.0018 -0.8817 1.8449 26 1 5.9475 -1.9653 0.5844 27 1 9.0275 -0.5345 -3.0470 28 1 4.1232 -2.1322 -0.0100 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095673330.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:54 Heat of formation + Delta-G solvation = -13.431267 kcal Electronic energy + Delta-G solvation = -13087.314341 eV Core-core repulsion = 10741.517165 eV Total energy + Delta-G solvation = -2345.797176 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.57948 -37.62790 -36.65251 -34.17441 -32.65547 -31.64516 -28.80940 -27.30103 -23.99974 -23.31024 -21.41654 -18.99898 -17.54476 -16.98407 -16.48535 -16.11687 -15.80018 -15.06143 -14.88800 -14.53753 -14.34063 -13.68049 -13.38202 -13.09176 -13.00889 -12.72938 -12.53540 -12.14145 -12.08160 -11.78717 -11.57424 -11.38825 -10.76309 -9.75437 -9.49792 -9.26010 -8.25349 -6.39370 0.26481 0.38908 1.16875 1.51696 1.58644 1.72029 2.52321 2.71413 3.09798 3.86025 3.86411 4.13366 4.16817 4.35691 4.46030 4.66278 4.78054 4.81033 4.91228 5.05773 5.24389 5.33495 5.48350 5.49952 5.73581 5.94260 6.11706 6.43618 6.73883 6.95628 7.37580 8.87871 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.040270 B = 0.007797 C = 0.007356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.148279 B = 3590.432338 C = 3805.549865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.098 4.098 3 C -0.104 4.104 4 C -0.121 4.121 5 C -0.087 4.087 6 C 0.224 3.776 7 H 0.051 0.949 8 N -0.844 5.844 9 C -0.516 4.516 10 H 0.027 0.973 11 C 0.027 3.973 12 N -0.948 5.948 13 Si 1.002 2.998 14 H -0.278 1.278 15 H -0.324 1.324 16 H -0.257 1.257 17 C -0.117 4.117 18 C -0.045 4.045 19 Cl -0.071 7.071 20 H 0.078 0.922 21 H 0.071 0.929 22 H 0.090 0.910 23 H 0.160 0.840 24 H 0.133 0.867 25 H 0.334 0.666 26 H 0.339 0.661 27 H 0.265 0.735 28 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.257 1.478 9.563 17.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.099 4.099 3 C -0.122 4.122 4 C -0.140 4.140 5 C -0.090 4.090 6 C 0.115 3.885 7 H 0.068 0.932 8 N -0.375 5.375 9 C -0.554 4.554 10 H 0.045 0.955 11 C -0.172 4.172 12 N -0.588 5.588 13 Si 0.832 3.168 14 H -0.204 1.204 15 H -0.255 1.255 16 H -0.181 1.181 17 C -0.137 4.137 18 C -0.072 4.072 19 Cl -0.042 7.042 20 H 0.097 0.903 21 H 0.090 0.910 22 H 0.109 0.891 23 H 0.178 0.822 24 H 0.151 0.849 25 H 0.147 0.853 26 H 0.153 0.847 27 H 0.074 0.926 28 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -13.479 1.536 9.242 16.416 hybrid contribution -0.048 -0.549 0.058 0.554 sum -13.527 0.986 9.300 16.446 Atomic orbital electron populations 1.20856 0.88307 1.04179 1.03347 1.20058 0.98086 0.90915 1.00804 1.21275 0.93348 0.98104 0.99496 1.21392 0.94982 0.97963 0.99664 1.20979 0.98216 0.93124 0.96669 1.18404 0.85736 0.92668 0.91736 0.93150 1.59078 1.66726 1.06072 1.05588 1.20965 0.91883 1.50233 0.92301 0.95505 1.25878 1.00719 0.92723 0.97867 1.70091 1.15128 1.50903 1.22629 0.84816 0.74955 0.78658 0.78369 1.20387 1.25467 1.18103 1.20814 0.92280 0.98717 1.01845 1.20889 0.91881 0.87249 1.07140 1.98317 1.76562 1.32325 1.97015 0.90346 0.91034 0.89121 0.82232 0.84876 0.85293 0.84703 0.92634 0.86224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.16 9.62 71.24 0.68 -1.48 15 2 C -0.10 -2.67 5.88 -19.84 -0.12 -2.78 15 3 C -0.10 -2.81 9.70 22.26 0.22 -2.59 15 4 C -0.12 -4.02 9.67 22.27 0.22 -3.80 15 5 C -0.09 -3.38 4.88 -19.87 -0.10 -3.48 15 6 C 0.22 9.98 2.34 43.42 0.10 10.08 15 7 H 0.05 2.26 7.06 -2.39 -0.02 2.25 15 8 N -0.84 -33.52 6.59 -174.95 -1.15 -34.67 15 9 C -0.52 -29.01 9.28 25.60 0.24 -28.77 15 10 H 0.03 1.70 7.98 -2.91 -0.02 1.68 15 11 C 0.03 1.58 5.47 84.66 0.46 2.04 15 12 N -0.95 -59.69 13.96 21.45 0.30 -59.39 15 13 Si 1.00 48.65 26.03 68.60 1.79 50.44 15 14 H -0.28 -13.31 7.11 99.48 0.71 -12.61 15 15 H -0.32 -15.94 7.11 99.48 0.71 -15.23 15 16 H -0.26 -11.58 6.54 99.48 0.65 -10.93 15 17 C -0.12 -4.28 9.07 22.29 0.20 -4.07 15 18 C -0.05 -1.42 6.32 22.33 0.14 -1.28 15 19 Cl -0.07 -1.97 27.30 -2.72 -0.07 -2.04 15 20 H 0.08 1.45 8.14 -2.39 -0.02 1.43 15 21 H 0.07 1.38 6.91 -2.38 -0.02 1.36 15 22 H 0.09 1.34 8.09 -2.39 -0.02 1.32 15 23 H 0.16 3.10 8.06 -2.91 -0.02 3.07 15 24 H 0.13 4.08 8.04 -2.91 -0.02 4.06 15 25 H 0.33 11.04 9.06 -89.70 -0.81 10.23 15 26 H 0.34 13.20 7.35 -89.69 -0.66 12.55 15 27 H 0.27 15.72 8.31 -92.70 -0.77 14.95 15 28 H 0.12 4.43 6.67 -2.91 -0.02 4.41 15 Total: -1.00 -65.83 252.53 2.57 -63.27 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: -0.34 Total: 18.53 kcal Atomic # 6 Polarization: -38.19 SS G_CDS: 2.05 Total: -36.14 kcal Atomic # 7 Polarization: -93.20 SS G_CDS: -0.85 Total: -94.06 kcal Atomic # 14 Polarization: 48.65 SS G_CDS: 1.79 Total: 50.44 kcal Atomic # 17 Polarization: -1.97 SS G_CDS: -0.07 Total: -2.04 kcal Total: -65.83 2.57 -63.27 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095673330.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.835 kcal (2) G-P(sol) polarization free energy of solvation -65.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds