Wall clock time and date at job start Mon Mar 30 2020 03:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38261 * 119.99289 * 2 1 4 4 C 1.38216 * 120.02799 * 180.25211 * 3 2 1 5 5 C 1.38242 * 120.01016 * 359.49859 * 4 3 2 6 6 C 1.38328 * 119.98800 * 0.25050 * 5 4 3 7 7 Cl 1.73593 * 120.01575 * 180.02562 * 6 5 4 8 8 C 1.38196 * 119.99188 * 179.75525 * 2 1 3 9 9 C 1.50697 * 120.00690 * 0.02562 * 8 2 1 10 10 H 1.09006 * 109.46989 * 191.46611 * 9 8 2 11 11 N 1.46897 * 109.47396 * 311.46363 * 9 8 2 12 12 C 1.50696 * 109.47181 * 71.46581 * 9 8 2 13 13 H 1.08002 * 119.99780 * 359.97438 * 12 9 8 14 14 C 1.37879 * 120.00461 * 179.97438 * 12 9 8 15 15 N 1.31515 * 119.99344 * 0.02562 * 14 12 9 16 16 Si 1.86795 * 120.00109 * 180.02562 * 14 12 9 17 17 H 1.48504 * 109.47162 * 60.00214 * 16 14 12 18 18 H 1.48501 * 109.46829 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47110 * 299.99913 * 16 14 12 20 20 H 1.09000 * 109.46913 * 264.45001 * 1 2 3 21 21 H 1.08998 * 109.46978 * 24.45114 * 1 2 3 22 22 H 1.09007 * 109.47125 * 144.45118 * 1 2 3 23 23 H 1.08005 * 119.98847 * 0.02667 * 3 2 1 24 24 H 1.07996 * 119.99690 * 179.76862 * 4 3 2 25 25 H 1.08001 * 120.00770 * 180.27162 * 5 4 3 26 26 H 1.00905 * 111.00099 * 73.21523 * 11 9 8 27 27 H 1.00896 * 111.00551 * 197.17124 * 11 9 8 28 28 H 0.97000 * 119.99776 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1975 0.0000 4 6 3.5804 1.1983 -0.0053 5 6 4.2726 0.0017 -0.0001 6 6 3.5817 -1.1967 0.0052 7 17 4.4501 -2.6997 0.0124 8 6 2.1979 -1.1969 0.0051 9 6 1.4444 -2.5019 0.0101 10 1 2.1349 -3.3194 0.2180 11 7 0.4049 -2.4633 1.0474 12 6 0.8026 -2.7166 -1.3364 13 1 0.9275 -1.9813 -2.1175 14 6 0.0560 -3.8517 -1.5712 15 7 -0.0965 -4.7468 -0.6198 16 14 -0.7389 -4.1180 -3.2405 17 1 0.3123 -4.1569 -4.2888 18 1 -1.4805 -5.4046 -3.2359 19 1 -1.6798 -3.0047 -3.5240 20 1 -0.3633 -0.0994 1.0229 21 1 -0.3633 0.9355 -0.4254 22 1 -0.3634 -0.8362 -0.5975 23 1 1.6579 2.1326 0.0004 24 1 4.1197 2.1340 -0.0090 25 1 5.3526 0.0024 0.0003 26 1 -0.3598 -1.8659 0.7709 27 1 0.0773 -3.3923 1.2659 28 1 -0.6215 -5.5456 -0.7851 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095684437.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:49 Heat of formation + Delta-G solvation = 11.344290 kcal Electronic energy + Delta-G solvation = -13516.690429 eV Core-core repulsion = 11171.967602 eV Total energy + Delta-G solvation = -2344.722827 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.05235 -35.75183 -34.90640 -32.09839 -31.08281 -29.30791 -26.81964 -25.66041 -22.67735 -21.20950 -19.84826 -16.69589 -15.98895 -15.30266 -14.84448 -14.39615 -13.73613 -13.33681 -12.80856 -12.74849 -12.25229 -12.03185 -11.56633 -11.47871 -11.05653 -10.90678 -10.64715 -10.63410 -10.51526 -10.24721 -9.94244 -9.32119 -8.59454 -7.99496 -7.89935 -7.19950 -6.11013 -4.24672 1.82192 2.00127 2.90479 3.22940 3.28485 3.31675 4.24299 4.37708 5.12337 5.35276 5.42089 5.61335 5.85241 5.95430 6.14894 6.33699 6.41840 6.58414 6.72330 6.85744 6.92673 6.96638 7.19145 7.50816 7.72185 7.74100 8.08586 8.70407 8.90771 9.10703 9.44235 10.88132 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.027437 B = 0.011179 C = 0.009489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.275823 B = 2504.061402 C = 2950.107632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.059 4.059 3 C -0.127 4.127 4 C -0.134 4.134 5 C -0.126 4.126 6 C -0.037 4.037 7 Cl -0.077 7.077 8 C -0.017 4.017 9 C 0.233 3.767 10 H 0.060 0.940 11 N -0.855 5.855 12 C -0.539 4.539 13 H 0.055 0.945 14 C 0.068 3.932 15 N -0.891 5.891 16 Si 0.895 3.105 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.276 1.276 20 H 0.073 0.927 21 H 0.047 0.953 22 H 0.100 0.900 23 H 0.116 0.884 24 H 0.118 0.882 25 H 0.120 0.880 26 H 0.323 0.677 27 H 0.347 0.653 28 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.688 8.008 1.168 8.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.060 4.060 3 C -0.145 4.145 4 C -0.152 4.152 5 C -0.145 4.145 6 C -0.064 4.064 7 Cl -0.048 7.048 8 C -0.019 4.019 9 C 0.123 3.877 10 H 0.078 0.922 11 N -0.387 5.387 12 C -0.579 4.579 13 H 0.074 0.926 14 C -0.135 4.135 15 N -0.529 5.529 16 Si 0.722 3.278 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.201 1.201 20 H 0.091 0.909 21 H 0.066 0.934 22 H 0.118 0.882 23 H 0.134 0.866 24 H 0.136 0.864 25 H 0.138 0.862 26 H 0.137 0.863 27 H 0.161 0.839 28 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.241 7.987 1.690 9.200 hybrid contribution -0.822 -0.738 -1.756 2.074 sum 3.419 7.249 -0.066 8.015 Atomic orbital electron populations 1.21095 0.91219 1.02724 1.02769 1.19654 0.96495 0.91504 0.98317 1.21040 0.94109 0.97460 1.01940 1.20785 0.94219 0.96819 1.03380 1.20834 0.99450 0.91085 1.03104 1.20806 0.92352 0.86468 1.06727 1.98317 1.75995 1.33492 1.97005 1.20318 0.91069 0.97849 0.92632 1.18088 0.91211 0.88195 0.90164 0.92186 1.59701 1.16544 1.17582 1.44849 1.21645 1.31809 1.05744 0.98661 0.92646 1.24983 0.96182 0.95331 0.96999 1.69791 1.40104 1.10345 1.32659 0.86604 0.79437 0.77440 0.84276 1.20145 1.21196 1.20149 0.90892 0.93411 0.88173 0.86618 0.86379 0.86181 0.86318 0.83882 0.92445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.20 7.99 36.01 0.29 -1.92 15 2 C -0.06 -1.16 5.76 -104.62 -0.60 -1.77 15 3 C -0.13 -2.13 9.68 -39.58 -0.38 -2.51 15 4 C -0.13 -2.11 10.05 -39.59 -0.40 -2.50 15 5 C -0.13 -2.17 9.83 -39.55 -0.39 -2.56 15 6 C -0.04 -0.75 6.31 -39.50 -0.25 -1.00 15 7 Cl -0.08 -1.54 27.05 -51.86 -1.40 -2.94 15 8 C -0.02 -0.38 4.89 -104.59 -0.51 -0.89 15 9 C 0.23 5.75 2.63 -70.02 -0.18 5.57 15 10 H 0.06 1.62 6.29 -51.93 -0.33 1.30 15 11 N -0.85 -20.06 8.68 -6.65 -0.06 -20.12 15 12 C -0.54 -14.15 6.70 -34.44 -0.23 -14.38 15 13 H 0.06 1.48 7.74 -52.49 -0.41 1.08 15 14 C 0.07 1.80 5.39 -17.82 -0.10 1.70 15 15 N -0.89 -24.16 11.78 55.43 0.65 -23.51 15 16 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 15 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 18 H -0.29 -6.60 7.11 56.52 0.40 -6.20 15 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 15 20 H 0.07 1.26 7.23 -51.93 -0.38 0.89 15 21 H 0.05 0.73 8.05 -51.93 -0.42 0.31 15 22 H 0.10 2.08 4.83 -51.93 -0.25 1.83 15 23 H 0.12 1.60 8.06 -52.48 -0.42 1.18 15 24 H 0.12 1.46 8.06 -52.49 -0.42 1.04 15 25 H 0.12 1.77 8.06 -52.49 -0.42 1.34 15 26 H 0.32 7.15 4.80 -39.29 -0.19 6.96 15 27 H 0.35 8.65 7.54 -39.29 -0.30 8.35 15 28 H 0.27 6.94 8.31 -40.82 -0.34 6.60 15 LS Contribution 246.56 15.07 3.72 3.72 Total: -1.00 -27.13 246.56 -7.53 -34.67 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -2.66 Total: 12.75 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: -2.76 Total: -20.26 kcal Atomic # 7 Polarization: -44.22 SS G_CDS: 0.60 Total: -43.62 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 17 Polarization: -1.54 SS G_CDS: -1.40 Total: -2.94 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -27.13 -7.53 -34.67 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095684437.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.012 kcal (2) G-P(sol) polarization free energy of solvation -27.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds