Wall clock time and date at job start Mon Mar 30 2020 03:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38261 * 119.99289 * 2 1 4 4 C 1.38216 * 120.02799 * 180.25211 * 3 2 1 5 5 C 1.38242 * 120.01016 * 359.49859 * 4 3 2 6 6 C 1.38328 * 119.98800 * 0.25050 * 5 4 3 7 7 Cl 1.73593 * 120.01575 * 180.02562 * 6 5 4 8 8 C 1.38196 * 119.99188 * 179.75525 * 2 1 3 9 9 C 1.50697 * 120.00690 * 0.02562 * 8 2 1 10 10 H 1.09006 * 109.46989 * 191.46611 * 9 8 2 11 11 N 1.46897 * 109.47396 * 311.46363 * 9 8 2 12 12 C 1.50696 * 109.47181 * 71.46581 * 9 8 2 13 13 H 1.08002 * 119.99780 * 359.97438 * 12 9 8 14 14 C 1.37879 * 120.00461 * 179.97438 * 12 9 8 15 15 N 1.31515 * 119.99344 * 0.02562 * 14 12 9 16 16 Si 1.86795 * 120.00109 * 180.02562 * 14 12 9 17 17 H 1.48504 * 109.47162 * 60.00214 * 16 14 12 18 18 H 1.48501 * 109.46829 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47110 * 299.99913 * 16 14 12 20 20 H 1.09000 * 109.46913 * 264.45001 * 1 2 3 21 21 H 1.08998 * 109.46978 * 24.45114 * 1 2 3 22 22 H 1.09007 * 109.47125 * 144.45118 * 1 2 3 23 23 H 1.08005 * 119.98847 * 0.02667 * 3 2 1 24 24 H 1.07996 * 119.99690 * 179.76862 * 4 3 2 25 25 H 1.08001 * 120.00770 * 180.27162 * 5 4 3 26 26 H 1.00905 * 111.00099 * 73.21523 * 11 9 8 27 27 H 1.00896 * 111.00551 * 197.17124 * 11 9 8 28 28 H 0.97000 * 119.99776 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1975 0.0000 4 6 3.5804 1.1983 -0.0053 5 6 4.2726 0.0017 -0.0001 6 6 3.5817 -1.1967 0.0052 7 17 4.4501 -2.6997 0.0124 8 6 2.1979 -1.1969 0.0051 9 6 1.4444 -2.5019 0.0101 10 1 2.1349 -3.3194 0.2180 11 7 0.4049 -2.4633 1.0474 12 6 0.8026 -2.7166 -1.3364 13 1 0.9275 -1.9813 -2.1175 14 6 0.0560 -3.8517 -1.5712 15 7 -0.0965 -4.7468 -0.6198 16 14 -0.7389 -4.1180 -3.2405 17 1 0.3123 -4.1569 -4.2888 18 1 -1.4805 -5.4046 -3.2359 19 1 -1.6798 -3.0047 -3.5240 20 1 -0.3633 -0.0994 1.0229 21 1 -0.3633 0.9355 -0.4254 22 1 -0.3634 -0.8362 -0.5975 23 1 1.6579 2.1326 0.0004 24 1 4.1197 2.1340 -0.0090 25 1 5.3526 0.0024 0.0003 26 1 -0.3598 -1.8659 0.7709 27 1 0.0773 -3.3923 1.2659 28 1 -0.6215 -5.5456 -0.7851 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095684437.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:49 Heat of formation + Delta-G solvation = -4.879619 kcal Electronic energy + Delta-G solvation = -13517.393950 eV Core-core repulsion = 11171.967602 eV Total energy + Delta-G solvation = -2345.426349 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.50941 -37.26807 -36.65459 -33.85075 -32.66913 -30.90711 -28.37002 -27.49635 -24.32791 -22.67456 -21.41263 -18.66348 -17.49154 -16.84109 -16.60819 -15.96673 -15.29800 -15.02769 -14.44888 -14.24868 -13.84812 -13.55295 -13.20249 -13.08234 -12.91773 -12.59080 -12.37211 -12.15702 -12.01631 -11.81164 -11.77359 -11.08391 -10.55727 -9.43184 -9.38791 -9.10594 -8.09855 -6.31185 0.41774 0.59207 1.37815 1.39591 1.41513 1.46815 2.37483 2.89735 3.09467 4.05957 4.10863 4.24534 4.49454 4.56279 4.77370 4.88522 4.99122 5.03517 5.18082 5.27763 5.46740 5.53143 5.64737 5.71281 5.95483 6.10310 6.19430 6.70577 6.95149 7.17595 7.41238 8.85792 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.027437 B = 0.011179 C = 0.009489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.275823 B = 2504.061402 C = 2950.107632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.078 4.078 3 C -0.121 4.121 4 C -0.119 4.119 5 C -0.126 4.126 6 C -0.059 4.059 7 Cl -0.088 7.088 8 C -0.056 4.056 9 C 0.238 3.762 10 H 0.027 0.973 11 N -0.847 5.847 12 C -0.543 4.543 13 H 0.044 0.956 14 C 0.024 3.976 15 N -0.915 5.915 16 Si 0.951 3.049 17 H -0.279 1.279 18 H -0.284 1.284 19 H -0.267 1.267 20 H 0.075 0.925 21 H 0.078 0.922 22 H 0.068 0.932 23 H 0.152 0.848 24 H 0.164 0.836 25 H 0.146 0.854 26 H 0.330 0.670 27 H 0.335 0.665 28 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.003 10.523 0.699 11.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.079 4.079 3 C -0.139 4.139 4 C -0.137 4.137 5 C -0.144 4.144 6 C -0.086 4.086 7 Cl -0.060 7.060 8 C -0.058 4.058 9 C 0.128 3.872 10 H 0.045 0.955 11 N -0.378 5.378 12 C -0.583 4.583 13 H 0.063 0.937 14 C -0.176 4.176 15 N -0.554 5.554 16 Si 0.777 3.223 17 H -0.205 1.205 18 H -0.209 1.209 19 H -0.192 1.192 20 H 0.094 0.906 21 H 0.097 0.903 22 H 0.087 0.913 23 H 0.170 0.830 24 H 0.181 0.819 25 H 0.164 0.836 26 H 0.144 0.856 27 H 0.147 0.853 28 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.557 10.520 1.221 11.529 hybrid contribution -0.865 -1.427 -1.582 2.299 sum 3.692 9.093 -0.361 9.821 Atomic orbital electron populations 1.20999 0.90751 1.02985 1.02561 1.19907 0.97173 0.91886 0.98899 1.21446 0.94842 0.97592 1.00049 1.21332 0.94080 0.97898 1.00354 1.21208 1.00874 0.90392 1.01973 1.21090 0.92155 0.87277 1.08097 1.98303 1.75971 1.34557 1.97137 1.20218 0.91936 0.97472 0.96163 1.17858 0.90788 0.89142 0.89398 0.95470 1.59719 1.16691 1.16767 1.44611 1.21801 1.31783 1.05442 0.99231 0.93740 1.25653 0.96811 0.95219 0.99954 1.69895 1.40775 1.10640 1.34084 0.85712 0.78541 0.77542 0.80471 1.20501 1.20891 1.19222 0.90617 0.90310 0.91300 0.82986 0.81862 0.83643 0.85558 0.85269 0.92529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.07 7.99 71.24 0.57 -3.50 15 2 C -0.08 -2.94 5.76 -19.87 -0.11 -3.05 15 3 C -0.12 -3.57 9.68 22.27 0.22 -3.36 15 4 C -0.12 -3.19 10.05 22.27 0.22 -2.96 15 5 C -0.13 -3.99 9.83 22.29 0.22 -3.77 15 6 C -0.06 -2.39 6.31 22.32 0.14 -2.25 15 7 Cl -0.09 -3.58 27.05 -2.72 -0.07 -3.65 15 8 C -0.06 -2.49 4.89 -19.84 -0.10 -2.59 15 9 C 0.24 12.07 2.63 43.42 0.11 12.18 15 10 H 0.03 1.54 6.29 -2.38 -0.01 1.53 15 11 N -0.85 -40.79 8.68 -174.96 -1.52 -42.31 15 12 C -0.54 -29.13 6.70 25.60 0.17 -28.96 15 13 H 0.04 2.42 7.74 -2.91 -0.02 2.40 15 14 C 0.02 1.28 5.39 84.66 0.46 1.74 15 15 N -0.91 -50.78 11.78 21.45 0.25 -50.53 15 16 Si 0.95 42.88 29.54 68.60 2.03 44.91 15 17 H -0.28 -12.65 7.11 99.48 0.71 -11.94 15 18 H -0.28 -12.55 7.11 99.48 0.71 -11.84 15 19 H -0.27 -11.57 7.11 99.48 0.71 -10.87 15 20 H 0.08 2.54 7.23 -2.39 -0.02 2.53 15 21 H 0.08 2.19 8.05 -2.39 -0.02 2.17 15 22 H 0.07 2.86 4.83 -2.38 -0.01 2.85 15 23 H 0.15 3.35 8.06 -2.91 -0.02 3.32 15 24 H 0.16 2.95 8.06 -2.91 -0.02 2.93 15 25 H 0.15 3.78 8.06 -2.91 -0.02 3.76 15 26 H 0.33 14.89 4.80 -89.69 -0.43 14.46 15 27 H 0.33 17.30 7.54 -89.70 -0.68 16.63 15 28 H 0.27 14.13 8.31 -92.71 -0.77 13.36 15 Total: -1.00 -59.49 246.56 2.67 -56.82 By element: Atomic # 1 Polarization: 31.19 SS G_CDS: 0.09 Total: 31.28 kcal Atomic # 6 Polarization: -38.41 SS G_CDS: 1.90 Total: -36.51 kcal Atomic # 7 Polarization: -91.58 SS G_CDS: -1.27 Total: -92.84 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Atomic # 17 Polarization: -3.58 SS G_CDS: -0.07 Total: -3.65 kcal Total: -59.49 2.67 -56.82 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095684437.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.941 kcal (2) G-P(sol) polarization free energy of solvation -59.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds