Wall clock time and date at job start Mon Mar 30 2020 03:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00397 * 2 1 4 4 C 1.38221 * 120.01064 * 180.02562 * 3 2 1 5 5 C 1.38261 * 120.02816 * 359.79483 * 4 3 2 6 6 C 1.38193 * 120.01235 * 0.46185 * 5 4 3 7 7 C 1.50696 * 120.01038 * 179.79419 * 6 5 4 8 8 H 1.08998 * 109.47773 * 144.72270 * 7 6 5 9 9 N 1.46898 * 109.47145 * 24.72117 * 7 6 5 10 10 C 1.50704 * 109.46898 * 264.72252 * 7 6 5 11 11 H 1.08000 * 119.99958 * 5.42238 * 10 7 6 12 12 C 1.37880 * 120.00002 * 185.41972 * 10 7 6 13 13 N 1.31512 * 119.99776 * 9.56442 * 12 10 7 14 14 Si 1.86800 * 120.00037 * 189.56121 * 12 10 7 15 15 H 1.48504 * 109.46893 * 84.99168 * 14 12 10 16 16 H 1.48499 * 109.47034 * 204.98995 * 14 12 10 17 17 H 1.48493 * 109.47132 * 324.99497 * 14 12 10 18 18 C 1.38324 * 120.00730 * 180.02562 * 2 1 3 19 19 Cl 1.73609 * 120.01283 * 359.97438 * 18 2 1 20 20 H 1.09009 * 109.47127 * 269.97287 * 1 2 3 21 21 H 1.08997 * 109.47266 * 29.97201 * 1 2 3 22 22 H 1.09000 * 109.47251 * 149.97729 * 1 2 3 23 23 H 1.07995 * 119.99602 * 0.03088 * 3 2 1 24 24 H 1.08004 * 119.98764 * 180.02562 * 4 3 2 25 25 H 1.08000 * 119.99544 * 180.23154 * 5 4 3 26 26 H 1.00896 * 111.00653 * 173.33138 * 9 7 6 27 27 H 1.00903 * 111.00033 * 297.28699 * 9 7 6 28 28 H 0.97000 * 119.99889 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2725 0.0003 0.0032 6 6 3.5826 -1.1970 -0.0021 7 6 4.3369 -2.5016 -0.0027 8 1 3.7905 -3.2376 0.5870 9 7 5.6691 -2.2972 0.5816 10 6 4.4801 -2.9984 -1.4183 11 1 4.1446 -2.3858 -2.2421 12 6 5.0396 -4.2348 -1.6618 13 7 5.2749 -5.0581 -0.6636 14 14 5.4632 -4.7406 -3.4094 15 1 6.8084 -4.2203 -3.7629 16 1 5.4635 -6.2222 -3.5096 17 1 4.4546 -4.1813 -4.3448 18 6 2.1988 -1.1978 -0.0005 19 17 1.3313 -2.7016 -0.0005 20 1 -0.3634 -0.0005 1.0277 21 1 -0.3634 0.8902 -0.5134 22 1 -0.3634 -0.8898 -0.5142 23 1 1.6583 2.1324 0.0005 24 1 4.1202 2.1328 -0.0001 25 1 5.3525 0.0011 0.0066 26 1 6.1539 -3.1751 0.6927 27 1 6.2119 -1.6520 0.0274 28 1 5.6688 -5.9278 -0.8348 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104507286.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:59 Heat of formation + Delta-G solvation = 3.540488 kcal Electronic energy + Delta-G solvation = -13295.039365 eV Core-core repulsion = 10949.978139 eV Total energy + Delta-G solvation = -2345.061226 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.95248 -35.58556 -34.92255 -32.26084 -31.18094 -29.50479 -26.41111 -25.87994 -23.01542 -21.40649 -19.39679 -16.51905 -16.37224 -15.39391 -14.80946 -14.25853 -13.69143 -13.65774 -12.94939 -12.80404 -12.34869 -11.94445 -11.92490 -11.37206 -11.20273 -11.04878 -10.74700 -10.67611 -10.56827 -10.08635 -10.03533 -9.36989 -8.59974 -8.01220 -7.91414 -7.27730 -6.09799 -4.20765 1.81788 1.98249 3.00129 3.23731 3.31140 3.34985 4.24708 4.41185 5.13922 5.22488 5.30228 5.58755 5.64937 5.85680 5.96338 6.05583 6.14899 6.41946 6.52090 6.61180 6.92430 7.02174 7.09765 7.46486 7.71114 7.76385 8.08600 8.66420 8.81703 8.99336 9.46412 10.91495 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.030850 B = 0.010095 C = 0.008972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.408649 B = 2773.041350 C = 3119.940280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.088 4.088 3 C -0.140 4.140 4 C -0.121 4.121 5 C -0.109 4.109 6 C -0.016 4.016 7 C 0.235 3.765 8 H 0.068 0.932 9 N -0.850 5.850 10 C -0.537 4.537 11 H 0.054 0.946 12 C 0.071 3.929 13 N -0.887 5.887 14 Si 0.891 3.109 15 H -0.279 1.279 16 H -0.286 1.286 17 H -0.274 1.274 18 C -0.037 4.037 19 Cl -0.067 7.067 20 H 0.067 0.933 21 H 0.062 0.938 22 H 0.070 0.930 23 H 0.117 0.883 24 H 0.116 0.884 25 H 0.128 0.872 26 H 0.347 0.653 27 H 0.313 0.687 28 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.277 8.760 1.151 10.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.088 4.088 3 C -0.158 4.158 4 C -0.139 4.139 5 C -0.128 4.128 6 C -0.017 4.017 7 C 0.125 3.875 8 H 0.085 0.915 9 N -0.378 5.378 10 C -0.577 4.577 11 H 0.072 0.928 12 C -0.132 4.132 13 N -0.525 5.525 14 Si 0.719 3.281 15 H -0.205 1.205 16 H -0.212 1.212 17 H -0.199 1.199 18 C -0.064 4.064 19 Cl -0.038 7.038 20 H 0.086 0.914 21 H 0.081 0.919 22 H 0.089 0.911 23 H 0.135 0.865 24 H 0.134 0.866 25 H 0.146 0.854 26 H 0.160 0.840 27 H 0.123 0.877 28 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.694 8.711 1.848 10.570 hybrid contribution 0.571 -0.894 -1.967 2.234 sum -5.124 7.818 -0.118 9.348 Atomic orbital electron populations 1.20784 0.91286 1.02732 1.02142 1.19623 0.95956 0.91729 1.01536 1.20687 0.94185 0.96297 1.04656 1.21110 0.94134 0.97926 1.00704 1.20936 1.00320 0.90992 1.00544 1.20409 0.91419 0.97940 0.91962 1.18093 0.87344 0.87516 0.94513 0.91466 1.59550 1.06338 1.17468 1.54401 1.21594 1.41237 1.02498 0.92384 0.92755 1.24960 0.95418 0.95719 0.97125 1.69911 1.43225 1.08395 1.30949 0.86615 0.78941 0.77528 0.85012 1.20541 1.21196 1.19888 1.20644 0.92241 0.86290 1.07261 1.98323 1.76133 1.32585 1.96752 0.91408 0.91889 0.91127 0.86472 0.86593 0.85438 0.83960 0.87702 0.92596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.57 9.62 36.01 0.35 -1.22 15 2 C -0.09 -1.52 5.88 -104.59 -0.62 -2.13 15 3 C -0.14 -2.21 9.70 -39.59 -0.38 -2.59 15 4 C -0.12 -1.96 10.05 -39.58 -0.40 -2.36 15 5 C -0.11 -2.11 9.27 -39.59 -0.37 -2.47 15 6 C -0.02 -0.35 5.00 -104.59 -0.52 -0.87 15 7 C 0.23 5.81 2.32 -70.02 -0.16 5.65 15 8 H 0.07 1.86 7.07 -51.93 -0.37 1.49 15 9 N -0.85 -19.65 8.73 -6.65 -0.06 -19.71 15 10 C -0.54 -14.36 8.63 -34.44 -0.30 -14.66 15 11 H 0.05 1.50 7.76 -52.49 -0.41 1.09 15 12 C 0.07 1.91 5.32 -17.82 -0.09 1.82 15 13 N -0.89 -24.52 12.32 55.43 0.68 -23.84 15 14 Si 0.89 21.04 29.55 -169.99 -5.02 16.02 15 15 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 16 H -0.29 -6.74 7.11 56.52 0.40 -6.34 15 17 H -0.27 -6.51 7.11 56.52 0.40 -6.11 15 18 C -0.04 -0.77 6.31 -39.50 -0.25 -1.02 15 19 Cl -0.07 -1.37 25.74 -51.86 -1.34 -2.71 15 20 H 0.07 0.86 8.14 -51.92 -0.42 0.43 15 21 H 0.06 0.73 8.09 -51.93 -0.42 0.31 15 22 H 0.07 1.01 6.90 -51.93 -0.36 0.65 15 23 H 0.12 1.48 8.06 -52.49 -0.42 1.05 15 24 H 0.12 1.52 8.06 -52.48 -0.42 1.10 15 25 H 0.13 2.34 6.36 -52.49 -0.33 2.01 15 26 H 0.35 8.52 7.96 -39.29 -0.31 8.21 15 27 H 0.31 6.75 7.34 -39.29 -0.29 6.46 15 28 H 0.26 7.01 8.31 -40.82 -0.34 6.67 15 LS Contribution 253.80 15.07 3.82 3.82 Total: -1.00 -27.79 253.80 -7.54 -35.33 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -2.89 Total: 10.94 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: -2.74 Total: -19.86 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: 0.62 Total: -43.55 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -1.34 Total: -2.71 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -27.79 -7.54 -35.33 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104507286.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.874 kcal (2) G-P(sol) polarization free energy of solvation -27.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds