Wall clock time and date at job start Mon Mar 30 2020 03:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00397 * 2 1 4 4 C 1.38221 * 120.01064 * 180.02562 * 3 2 1 5 5 C 1.38261 * 120.02816 * 359.79483 * 4 3 2 6 6 C 1.38193 * 120.01235 * 0.46185 * 5 4 3 7 7 C 1.50696 * 120.01038 * 179.79419 * 6 5 4 8 8 H 1.08998 * 109.47773 * 144.72270 * 7 6 5 9 9 N 1.46898 * 109.47145 * 24.72117 * 7 6 5 10 10 C 1.50704 * 109.46898 * 264.72252 * 7 6 5 11 11 H 1.08000 * 119.99958 * 5.42238 * 10 7 6 12 12 C 1.37880 * 120.00002 * 185.41972 * 10 7 6 13 13 N 1.31512 * 119.99776 * 9.56442 * 12 10 7 14 14 Si 1.86800 * 120.00037 * 189.56121 * 12 10 7 15 15 H 1.48504 * 109.46893 * 84.99168 * 14 12 10 16 16 H 1.48499 * 109.47034 * 204.98995 * 14 12 10 17 17 H 1.48493 * 109.47132 * 324.99497 * 14 12 10 18 18 C 1.38324 * 120.00730 * 180.02562 * 2 1 3 19 19 Cl 1.73609 * 120.01283 * 359.97438 * 18 2 1 20 20 H 1.09009 * 109.47127 * 269.97287 * 1 2 3 21 21 H 1.08997 * 109.47266 * 29.97201 * 1 2 3 22 22 H 1.09000 * 109.47251 * 149.97729 * 1 2 3 23 23 H 1.07995 * 119.99602 * 0.03088 * 3 2 1 24 24 H 1.08004 * 119.98764 * 180.02562 * 4 3 2 25 25 H 1.08000 * 119.99544 * 180.23154 * 5 4 3 26 26 H 1.00896 * 111.00653 * 173.33138 * 9 7 6 27 27 H 1.00903 * 111.00033 * 297.28699 * 9 7 6 28 28 H 0.97000 * 119.99889 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2725 0.0003 0.0032 6 6 3.5826 -1.1970 -0.0021 7 6 4.3369 -2.5016 -0.0027 8 1 3.7905 -3.2376 0.5870 9 7 5.6691 -2.2972 0.5816 10 6 4.4801 -2.9984 -1.4183 11 1 4.1446 -2.3858 -2.2421 12 6 5.0396 -4.2348 -1.6618 13 7 5.2749 -5.0581 -0.6636 14 14 5.4632 -4.7406 -3.4094 15 1 6.8084 -4.2203 -3.7629 16 1 5.4635 -6.2222 -3.5096 17 1 4.4546 -4.1813 -4.3448 18 6 2.1988 -1.1978 -0.0005 19 17 1.3313 -2.7016 -0.0005 20 1 -0.3634 -0.0005 1.0277 21 1 -0.3634 0.8902 -0.5134 22 1 -0.3634 -0.8898 -0.5142 23 1 1.6583 2.1324 0.0005 24 1 4.1202 2.1328 -0.0001 25 1 5.3525 0.0011 0.0066 26 1 6.1539 -3.1751 0.6927 27 1 6.2119 -1.6520 0.0274 28 1 5.6688 -5.9278 -0.8348 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104507286.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:58 Heat of formation + Delta-G solvation = -13.492373 kcal Electronic energy + Delta-G solvation = -13295.777965 eV Core-core repulsion = 10949.978139 eV Total energy + Delta-G solvation = -2345.799826 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.38107 -37.11587 -36.70631 -33.96037 -32.76165 -31.08435 -27.94276 -27.57336 -24.74977 -22.80604 -20.97523 -18.57303 -17.86321 -16.93516 -16.55009 -15.89529 -15.20004 -15.04950 -14.60605 -14.32315 -13.98091 -13.44837 -13.17521 -12.98814 -12.92623 -12.87619 -12.40124 -12.22582 -12.17158 -11.91595 -11.63359 -11.08221 -10.63659 -9.48518 -9.38796 -9.16920 -8.12831 -6.32011 0.42112 0.57194 1.35563 1.37900 1.46567 1.49954 2.37106 2.90443 3.07502 3.95455 4.01820 4.24464 4.42923 4.61021 4.64261 4.83412 4.86294 4.93458 5.07588 5.26266 5.41438 5.59332 5.62389 5.69045 5.87763 6.06208 6.15634 6.68838 6.81304 7.07107 7.38504 8.85355 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.030850 B = 0.010095 C = 0.008972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.408649 B = 2773.041350 C = 3119.940280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.090 4.090 3 C -0.129 4.129 4 C -0.111 4.111 5 C -0.124 4.124 6 C -0.054 4.054 7 C 0.242 3.758 8 H 0.029 0.971 9 N -0.840 5.840 10 C -0.544 4.544 11 H 0.040 0.960 12 C 0.029 3.971 13 N -0.912 5.912 14 Si 0.949 3.051 15 H -0.270 1.270 16 H -0.284 1.284 17 H -0.277 1.277 18 C -0.063 4.063 19 Cl -0.083 7.083 20 H 0.081 0.919 21 H 0.093 0.907 22 H 0.059 0.941 23 H 0.162 0.838 24 H 0.156 0.844 25 H 0.129 0.871 26 H 0.337 0.663 27 H 0.322 0.678 28 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.819 11.181 0.583 12.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.091 4.091 3 C -0.146 4.146 4 C -0.128 4.128 5 C -0.143 4.143 6 C -0.055 4.055 7 C 0.132 3.868 8 H 0.047 0.953 9 N -0.367 5.367 10 C -0.584 4.584 11 H 0.058 0.942 12 C -0.172 4.172 13 N -0.551 5.551 14 Si 0.775 3.225 15 H -0.196 1.196 16 H -0.209 1.209 17 H -0.202 1.202 18 C -0.090 4.090 19 Cl -0.054 7.054 20 H 0.100 0.900 21 H 0.111 0.889 22 H 0.078 0.922 23 H 0.179 0.821 24 H 0.173 0.827 25 H 0.146 0.854 26 H 0.148 0.852 27 H 0.133 0.867 28 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.236 11.149 1.279 12.839 hybrid contribution 0.698 -1.542 -1.756 2.439 sum -5.538 9.607 -0.476 11.100 Atomic orbital electron populations 1.20853 0.88864 1.03733 1.03324 1.20091 0.97863 0.91033 1.00116 1.21232 0.94190 0.97269 1.01948 1.21531 0.94732 0.98153 0.98433 1.21070 1.00600 0.91345 1.01250 1.20299 0.92241 0.97536 0.95416 1.17796 0.87660 0.88612 0.92713 0.95334 1.59506 1.05959 1.16885 1.54346 1.21740 1.41026 1.02476 0.93122 0.94194 1.25620 0.95410 0.95773 1.00406 1.70011 1.43872 1.08629 1.32553 0.85721 0.78807 0.77117 0.80895 1.19577 1.20943 1.20162 1.20923 0.92068 0.86967 1.09025 1.98304 1.76247 1.33923 1.96941 0.90018 0.88865 0.92174 0.82092 0.82676 0.85360 0.85164 0.86706 0.92562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.76 9.62 71.24 0.68 -2.08 15 2 C -0.09 -2.91 5.88 -19.84 -0.12 -3.02 15 3 C -0.13 -3.49 9.70 22.26 0.22 -3.27 15 4 C -0.11 -3.20 10.05 22.27 0.22 -2.97 15 5 C -0.12 -4.63 9.27 22.26 0.21 -4.42 15 6 C -0.05 -2.38 5.00 -19.84 -0.10 -2.48 15 7 C 0.24 12.35 2.32 43.42 0.10 12.45 15 8 H 0.03 1.67 7.07 -2.39 -0.02 1.65 15 9 N -0.84 -39.74 8.73 -174.96 -1.53 -41.27 15 10 C -0.54 -29.73 8.63 25.60 0.22 -29.51 15 11 H 0.04 2.25 7.76 -2.91 -0.02 2.23 15 12 C 0.03 1.57 5.32 84.66 0.45 2.02 15 13 N -0.91 -51.55 12.32 21.45 0.26 -51.29 15 14 Si 0.95 43.54 29.55 68.60 2.03 45.57 15 15 H -0.27 -11.94 7.11 99.48 0.71 -11.24 15 16 H -0.28 -12.83 7.11 99.48 0.71 -12.12 15 17 H -0.28 -12.70 7.11 99.48 0.71 -12.00 15 18 C -0.06 -2.58 6.31 22.32 0.14 -2.44 15 19 Cl -0.08 -3.49 25.74 -2.72 -0.07 -3.56 15 20 H 0.08 1.81 8.14 -2.38 -0.02 1.79 15 21 H 0.09 1.74 8.09 -2.39 -0.02 1.73 15 22 H 0.06 1.63 6.90 -2.39 -0.02 1.61 15 23 H 0.16 3.00 8.06 -2.91 -0.02 2.97 15 24 H 0.16 3.25 8.06 -2.91 -0.02 3.23 15 25 H 0.13 4.60 6.36 -2.91 -0.02 4.58 15 26 H 0.34 17.02 7.96 -89.70 -0.71 16.31 15 27 H 0.32 14.06 7.34 -89.69 -0.66 13.41 15 28 H 0.27 14.30 8.31 -92.71 -0.77 13.53 15 Total: -1.00 -61.13 253.80 2.54 -58.59 By element: Atomic # 1 Polarization: 27.86 SS G_CDS: -0.18 Total: 27.68 kcal Atomic # 6 Polarization: -37.74 SS G_CDS: 2.03 Total: -35.72 kcal Atomic # 7 Polarization: -91.30 SS G_CDS: -1.26 Total: -92.56 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Atomic # 17 Polarization: -3.49 SS G_CDS: -0.07 Total: -3.56 kcal Total: -61.13 2.54 -58.59 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104507286.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.098 kcal (2) G-P(sol) polarization free energy of solvation -61.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds