Wall clock time and date at job start Mon Mar 30 2020 02:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99627 * 2 1 4 4 H 1.48504 * 109.47089 * 269.99985 * 3 2 1 5 5 H 1.48491 * 109.47597 * 30.00428 * 3 2 1 6 6 H 1.48507 * 109.46678 * 150.00775 * 3 2 1 7 7 C 1.37877 * 119.99991 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00253 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99603 * 179.97438 * 7 2 1 10 10 H 1.08997 * 109.46817 * 59.99964 * 9 7 2 11 11 N 1.46891 * 109.47147 * 299.99703 * 9 7 2 12 12 C 1.50705 * 109.46635 * 179.97438 * 9 7 2 13 13 C 1.38233 * 119.94445 * 100.00455 * 12 9 7 14 14 C 1.38095 * 120.13324 * 179.97438 * 13 12 9 15 15 C 1.39028 * 120.02934 * 0.02562 * 14 13 12 16 16 S 1.76200 * 120.05272 * 179.97438 * 15 14 13 17 17 C 1.38865 * 119.90003 * 359.97438 * 15 14 13 18 18 C 1.38596 * 119.86043 * 0.02562 * 17 15 14 19 19 O 1.35900 * 120.01228 * 179.97438 * 18 17 15 20 20 H 0.96998 * 120.00503 * 359.97438 * 1 2 3 21 21 H 1.00903 * 110.99879 * 176.05484 * 11 9 7 22 22 H 1.00903 * 110.99944 * 299.99660 * 11 9 7 23 23 H 1.08003 * 119.93258 * 359.97438 * 13 12 9 24 24 H 1.07994 * 119.98548 * 179.97438 * 14 13 12 25 25 H 1.34499 * 102.99977 * 270.02063 * 16 15 14 26 26 H 1.07997 * 120.06859 * 179.72366 * 17 15 14 27 27 H 0.96692 * 114.00034 * 90.00263 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 1 3.8752 -0.6803 0.8888 11 7 4.0007 -0.5013 -1.2005 12 6 4.0139 -2.6148 -0.0010 13 6 4.4396 -3.1963 -1.1806 14 6 4.9012 -4.4978 -1.1849 15 6 4.9381 -5.2268 -0.0016 16 16 5.5262 -6.8878 -0.0065 17 6 4.5107 -4.6440 1.1841 18 6 4.0483 -3.3374 1.1834 19 8 3.6289 -2.7642 2.3420 20 1 -0.4851 0.8400 0.0004 21 1 5.0073 -0.4312 -1.1925 22 1 3.6769 -0.9587 -2.0396 23 1 4.4112 -2.6315 -2.1008 24 1 5.2328 -4.9498 -2.1079 25 1 4.4104 -7.6032 -0.2349 26 1 4.5340 -5.2093 2.1040 27 1 4.3275 -2.3080 2.8305 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104508588.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:55 Heat of formation + Delta-G solvation = -10.524185 kcal Electronic energy + Delta-G solvation = -13269.735556 eV Core-core repulsion = 10926.108147 eV Total energy + Delta-G solvation = -2343.627409 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.57404 -36.27334 -34.99792 -31.95406 -29.92036 -29.36833 -26.48140 -23.26772 -22.19763 -20.15652 -18.61488 -17.09225 -16.79281 -15.88481 -15.63806 -14.94133 -14.74683 -14.05347 -13.65588 -13.53716 -12.57048 -12.42353 -12.27577 -11.85019 -11.38330 -10.84455 -10.71869 -10.46540 -10.11128 -9.80188 -9.37809 -8.57947 -8.55619 -8.18285 -8.09977 -7.82469 -6.03013 -4.13211 1.16097 1.54251 1.83597 2.84697 3.53469 3.57598 3.69486 3.88611 4.60908 4.62418 5.08210 5.18894 5.29520 5.50663 5.65361 5.80471 6.01026 6.10111 6.38726 6.55845 6.64043 6.93532 7.00105 7.53631 8.01958 8.11349 8.22619 8.59353 8.96222 9.58191 11.06670 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.048250 B = 0.007636 C = 0.007309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.168294 B = 3666.035024 C = 3830.057156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.082 3.918 3 Si 0.939 3.061 4 H -0.281 1.281 5 H -0.318 1.318 6 H -0.275 1.275 7 C -0.507 4.507 8 H 0.069 0.931 9 C 0.219 3.781 10 H 0.057 0.943 11 N -0.842 5.842 12 C -0.062 4.062 13 C -0.126 4.126 14 C -0.079 4.079 15 C -0.117 4.117 16 S -0.141 6.141 17 C -0.101 4.101 18 C 0.105 3.895 19 O -0.477 6.477 20 H 0.264 0.736 21 H 0.312 0.688 22 H 0.336 0.664 23 H 0.129 0.871 24 H 0.128 0.872 25 H 0.072 0.928 26 H 0.132 0.868 27 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.059 -7.555 -0.042 14.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.122 4.122 3 Si 0.771 3.229 4 H -0.207 1.207 5 H -0.248 1.248 6 H -0.201 1.201 7 C -0.545 4.545 8 H 0.088 0.912 9 C 0.110 3.890 10 H 0.074 0.926 11 N -0.373 5.373 12 C -0.065 4.065 13 C -0.146 4.146 14 C -0.099 4.099 15 C -0.229 4.229 16 S 0.016 5.984 17 C -0.122 4.122 18 C 0.057 3.943 19 O -0.285 6.285 20 H 0.073 0.927 21 H 0.124 0.876 22 H 0.151 0.849 23 H 0.146 0.854 24 H 0.146 0.854 25 H 0.036 0.964 26 H 0.150 0.850 27 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 11.442 -7.855 0.088 13.879 hybrid contribution -0.107 0.484 -0.276 0.567 sum 11.335 -7.372 -0.188 13.523 Atomic orbital electron populations 1.69948 1.06797 1.27376 1.49411 1.25008 0.94620 1.00003 0.92617 0.85837 0.78282 0.80798 0.77953 1.20678 1.24794 1.20101 1.20564 0.86560 0.94591 1.52834 0.91241 1.18664 0.96815 0.83155 0.90405 0.92579 1.59357 1.13044 1.58605 1.06254 1.21915 0.91845 1.00420 0.92293 1.20944 1.00624 0.94890 0.98124 1.21434 0.97476 0.94279 0.96758 1.20772 1.10193 0.95908 0.95985 1.85719 1.16150 1.00421 1.96122 1.21767 0.97161 0.95456 0.97819 1.18238 0.98074 0.91135 0.86804 1.84976 1.37550 1.72932 1.33090 0.92654 0.87612 0.84898 0.85355 0.85416 0.96406 0.85042 0.76455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.65 13.96 55.43 0.77 -26.88 15 2 C 0.08 2.35 5.47 -17.82 -0.10 2.25 15 3 Si 0.94 23.46 26.03 -169.99 -4.42 19.03 15 4 H -0.28 -6.99 7.11 56.52 0.40 -6.59 15 5 H -0.32 -8.09 7.11 56.52 0.40 -7.69 15 6 H -0.28 -6.59 6.54 56.52 0.37 -6.22 15 7 C -0.51 -14.04 9.29 -34.44 -0.32 -14.36 15 8 H 0.07 2.17 7.98 -52.49 -0.42 1.75 15 9 C 0.22 4.84 1.99 -70.02 -0.14 4.70 15 10 H 0.06 1.28 6.91 -51.93 -0.36 0.92 15 11 N -0.84 -16.58 6.24 -6.65 -0.04 -16.62 15 12 C -0.06 -1.19 5.03 -104.42 -0.53 -1.72 15 13 C -0.13 -2.09 9.24 -39.64 -0.37 -2.45 15 14 C -0.08 -1.18 9.79 -39.34 -0.39 -1.57 15 15 C -0.12 -1.78 6.11 -39.06 -0.24 -2.02 15 16 S -0.14 -1.84 25.78 -107.50 -2.77 -4.61 15 17 C -0.10 -1.63 9.73 -39.22 -0.38 -2.01 15 18 C 0.10 1.92 6.66 -39.25 -0.26 1.66 15 19 O -0.48 -8.65 12.73 -19.43 -0.25 -8.90 15 20 H 0.26 7.65 8.31 -40.82 -0.34 7.31 15 21 H 0.31 5.13 9.06 -39.29 -0.36 4.78 15 22 H 0.34 6.31 7.28 -39.29 -0.29 6.02 15 23 H 0.13 1.92 6.24 -52.48 -0.33 1.60 15 24 H 0.13 1.60 8.06 -52.49 -0.42 1.18 15 25 H 0.07 0.91 9.07 97.61 0.89 1.79 15 26 H 0.13 1.88 8.06 -52.49 -0.42 1.46 15 27 H 0.38 4.83 9.06 45.56 0.41 5.24 15 LS Contribution 248.81 15.07 3.75 3.75 Total: -1.00 -32.06 248.81 -6.14 -38.19 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -0.46 Total: 11.56 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: -2.72 Total: -15.52 kcal Atomic # 7 Polarization: -44.23 SS G_CDS: 0.73 Total: -43.50 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: -0.25 Total: -8.90 kcal Atomic # 14 Polarization: 23.46 SS G_CDS: -4.42 Total: 19.03 kcal Atomic # 16 Polarization: -1.84 SS G_CDS: -2.77 Total: -4.61 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -32.06 -6.14 -38.19 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104508588.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.671 kcal (2) G-P(sol) polarization free energy of solvation -32.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds